MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 184638 bp
Accession: NZ_CP044312        Location: 4040670..4225307         Organism: Escherichia coli strain RM13745       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
F7D05_RS19850 () 4036618..4038135 - 1518 WP_061317333.1 UvrD-helicase domain-containing protein -
F7D05_RS19855 () 4038742..4039386 - 645 WP_040089481.1 hypothetical protein -
F7D05_RS19860 () 4039407..4039721 - 315 WP_151039364.1 PerC family transcriptional regulator -
F7D05_RS19865 () 4039756..4040394 - 639 WP_040089482.1 ParB N-terminal domain-containing protein -
F7D05_RS19870 () 4040379..4041611 - 1233 WP_040089483.1 phosphoadenosine phosphosulfate reductase -
F7D05_RS19875 () 4041752..4042396 - 645 WP_170989474.1 hypothetical protein -
F7D05_RS19880 () 4042513..4043663 - 1151 Protein_3889 hypothetical protein VF
F7D05_RS19885 () 4044089..4045834 - 1746 WP_122992006.1 NERD domain-containing protein -
F7D05_RS19890 () 4046012..4046560 - 549 WP_072278218.1 Outer membrane protein X VF
F7D05_RS19895 () 4047528..4048466 - 939 Protein_3892 VENN motif pre-toxin domain-containing protein -
F7D05_RS19900 () 4048601..4048858 - 258 WP_040089554.1 hypothetical protein -
F7D05_RS19905 () 4048855..4057833 - 8979 WP_151039366.1 16S rRNA endonuclease CdiA VF
F7D05_RS19910 () 4057849..4058376 - 528 WP_001243916.1 Leukotoxin-activating lysine-acyltransferase LtxC VF
F7D05_RS19915 () 4058386..4060038 - 1653 WP_061341861.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
F7D05_RS19920 () 4060715..4060939 + 225 WP_032152656.1 DUF4222 domain-containing protein -
F7D05_RS19925 () 4060948..4061181 - 234 WP_021580257.1 hypothetical protein -
F7D05_RS19930 () 4061268..4061891 - 624 WP_050940555.1 hypothetical protein -
F7D05_RS19935 () 4062503..4062646 + 144 WP_157839846.1 hypothetical protein -
F7D05_RS19940 () 4062766..4063278 + 513 WP_040089161.1 ProQ/FinO family protein -
F7D05_RS19945 () 4063454..4063633 - 180 Protein_3902 transposase domain-containing protein -
F7D05_RS19950 () 4064111..4064703 - 593 Protein_3903 porin -
F7D05_RS19955 () 4065277..4065889 + 613 Protein_3904 YfdX family protein -
F7D05_RS19960 () 4066095..4067705 - 1611 WP_151039456.1 ISL3 family transposase ISEc38 Transposase
F7D05_RS19965 () 4067786..4068808 + 1023 WP_000255944.1 IS21 family transposase IS100kyp Transposase
F7D05_RS19970 () 4068808..4069587 + 780 WP_001323403.1 IS21 family transposase IS100kyp Transposase
F7D05_RS19975 () 4070049..4070841 + 793 Protein_3908 hypothetical protein -
F7D05_RS19980 () 4071194..4071427 + 234 WP_077820601.1 AlpA family transcriptional regulator -
F7D05_RS19985 () 4071513..4072085 + 573 WP_050940575.1 hypothetical protein -
F7D05_RS19990 () 4072260..4072405 + 146 Protein_3911 IS1 family transposase -
F7D05_RS19995 () 4073575..4074594 + 1020 WP_050940578.1 transcriptional regulator -
F7D05_RS20000 () 4074704..4075576 + 873 WP_050940580.1 GTPase family protein -
F7D05_RS20005 () 4075949..4078798 + 2850 WP_151039368.1 calcium-binding autotransporter Cah -
F7D05_RS20010 () 4078919..4081435 + 2517 WP_050940602.1 hypothetical protein -
F7D05_RS20015 () 4081511..4081966 + 456 WP_000581504.1 hypothetical protein -
F7D05_RS20020 () 4082045..4082278 + 234 WP_001119729.1 DUF905 family protein -
F7D05_RS20025 () 4082378..4083196 + 819 WP_001234620.1 DUF945 domain-containing protein -
F7D05_RS20030 () 4083251..4083736 + 486 WP_050938918.1 antirestriction protein -
F7D05_RS20035 () 4083752..4084228 + 477 WP_001186727.1 RadC family protein -
F7D05_RS20040 () 4084291..4084512 + 222 WP_050938919.1 DUF987 domain-containing protein -
F7D05_RS20045 () 4084675..4085043 + 369 WP_001339471.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin Detail
F7D05_RS20050 () 4085133..4085510 + 378 WP_050938921.1 TA system toxin CbtA family protein Toxin Detail
F7D05_RS20055 () 4085507..4085995 + 489 WP_000761721.1 hypothetical protein -
F7D05_RS20060 () 4086007..4086204 + 198 WP_000839281.1 DUF957 domain-containing protein -
F7D05_RS20065 () 4086301..4086873 + 573 WP_001290246.1 DUF4942 domain-containing protein -
F7D05_RS20070 () 4087154..4087690 - 537 WP_000942795.1 Type II secretion system protein M VF
F7D05_RS20075 () 4087692..4088870 - 1179 WP_000094974.1 Type II secretion system protein L VF
F7D05_RS20080 () 4088867..4089844 - 978 WP_000633238.1 Putative type II secretion system protein K VF
F7D05_RS20085 () 4089847..4090446 - 600 WP_064760790.1 Type II secretion system protein J VF
F7D05_RS20090 () 4090443..4090814 - 372 WP_000820125.1 Type II secretion system protein I VF
F7D05_RS20095 () 4090811..4091374 - 564 WP_001115139.1 Type II secretion system protein H VF
F7D05_RS20100 () 4091378..4091833 - 456 WP_001087296.1 Type II secretion system protein G VF
F7D05_RS20105 () 4091850..4093073 - 1224 WP_001173448.1 Type II secretion system protein F VF
F7D05_RS20110 () 4093073..4093390 - 318 Protein_3935 Type II secretion system protein E VF
F7D05_RS20115 () 4093583..4094086 - 504 WP_040100330.1 hypothetical protein -
F7D05_RS20120 () 4094205..4094909 - 705 WP_040100331.1 hypothetical protein -
F7D05_RS20125 () 4094860..4095045 - 186 WP_001372435.1 Com family DNA-binding transcriptional regulator -
F7D05_RS20130 () 4095165..4095731 - 567 WP_040100333.1 DUF4376 domain-containing protein -
F7D05_RS20135 () 4097788..4098336 - 549 Protein_3940 prophage tail fiber N-terminal domain-containing protein -
F7D05_RS20140 () 4098323..4098853 - 531 WP_052924219.1 tail fiber assembly protein -
F7D05_RS20145 () 4098868..4099386 - 519 WP_077793277.1 hypothetical protein -
F7D05_RS20150 () 4099489..4099863 - 375 Protein_3943 phage tail protein -
F7D05_RS20155 () 4099867..4100451 - 585 WP_040100337.1 DUF2313 domain-containing protein -
F7D05_RS20160 () 4100436..4101512 - 1077 WP_040100339.1 baseplate J/gp47 family protein -
F7D05_RS20165 () 4101502..4101954 - 453 WP_040100341.1 phage GP46 family protein -
F7D05_RS20170 () 4101951..4102487 - 537 WP_000523890.1 phage baseplate assembly protein V -
F7D05_RS20175 () 4102478..4103548 - 1071 WP_052924218.1 phage tail protein -
F7D05_RS20180 () 4103548..4104822 - 1275 WP_052924217.1 DNA circularization N-terminal domain-containing protein -
F7D05_RS20185 () 4104822..4106615 - 1794 WP_052924216.1 phage tail protein -
F7D05_RS20190 () 4106602..4106739 - 138 WP_001127483.1 hypothetical protein -
F7D05_RS20195 () 4106702..4107097 - 396 WP_052924215.1 phage tail assembly protein -
F7D05_RS20200 () 4107099..4107455 - 357 WP_001062748.1 phage tail tube protein -
F7D05_RS20205 () 4107465..4108940 - 1476 WP_040100351.1 phage tail sheath subtilisin-like domain-containing protein -
F7D05_RS20210 () 4108940..4109125 - 186 WP_052924214.1 DUF2635 domain-containing protein -
F7D05_RS20215 () 4109106..4109717 - 612 WP_052924213.1 hypothetical protein -
F7D05_RS20220 () 4109714..4110256 - 543 WP_000513058.1 phage virion morphogenesis protein -
F7D05_RS20225 () 4110256..4110693 - 438 WP_000540583.1 DUF1320 domain-containing protein -
F7D05_RS20230 () 4110693..4111004 - 312 WP_001290368.1 hypothetical protein -
F7D05_RS20235 () 4111083..4111985 - 903 WP_052924212.1 Mu-like prophage major head subunit gpT family protein -
F7D05_RS20240 () 4111985..4112947 - 963 WP_052924211.1 peptidase -
F7D05_RS20245 () 4113161..4113925 - 765 WP_052924210.1 hypothetical protein -
F7D05_RS20250 () 4113918..4115489 - 1572 WP_052924209.1 DUF935 domain-containing protein -
F7D05_RS20255 () 4115486..4117012 - 1527 WP_112793722.1 terminase family protein -
F7D05_RS20260 () 4117018..4117599 - 582 WP_052924208.1 DUF3486 family protein -
F7D05_RS20265 () 4117589..4117747 - 159 WP_001080359.1 hypothetical protein -
F7D05_RS20270 () 4117737..4118036 - 300 WP_040100367.1 hypothetical protein -
F7D05_RS20275 () 4118039..4118326 - 288 WP_024168521.1 hypothetical protein -
F7D05_RS20280 () 4118332..4118637 - 306 WP_001557437.1 DUF2730 family protein -
F7D05_RS20285 () 4118622..4118849 - 228 WP_052924207.1 TraR/DksA C4-type zinc finger protein -
F7D05_RS20290 () 4118846..4119454 - 609 WP_000371427.1 hypothetical protein -
F7D05_RS20295 () 4119442..4119852 - 411 WP_052924206.1 hypothetical protein -
F7D05_RS20300 () 4119836..4120063 - 228 WP_052924205.1 hypothetical protein -
F7D05_RS20305 () 4120065..4120661 - 597 WP_040100373.1 N-acetylmuramidase -
F7D05_RS20310 () 4120747..4121196 - 450 WP_040100375.1 Middle operon regulator -
F7D05_RS20315 () 4121193..4121744 - 552 WP_040100376.1 regulatory protein GemA -
F7D05_RS20320 () 4121722..4122111 - 390 WP_040100378.1 hypothetical protein -
F7D05_RS20325 () 4122104..4122286 - 183 WP_040100379.1 hypothetical protein -
F7D05_RS20330 () 4122279..4122821 - 543 WP_151039372.1 hypothetical protein -
F7D05_RS20335 () 4122921..4123445 - 525 WP_001107927.1 host-nuclease inhibitor Gam family protein -
F7D05_RS20340 () 4123466..4123753 - 288 WP_040100384.1 hypothetical protein -
F7D05_RS20345 () 4123773..4124042 - 270 WP_001151278.1 hypothetical protein -
F7D05_RS20350 () 4124075..4124302 - 228 WP_000987801.1 hypothetical protein -
F7D05_RS20355 () 4124316..4125254 - 939 WP_001026713.1 AAA family ATPase -
F7D05_RS20360 () 4125293..4127281 - 1989 WP_040100386.1 Mu transposase C-terminal domain-containing protein -
F7D05_RS20365 () 4127289..4127510 - 222 WP_001473846.1 helix-turn-helix domain-containing protein -
F7D05_RS20370 () 4127698..4128222 + 525 WP_040100388.1 hypothetical protein -
F7D05_RS20375 () 4128552..4129724 - 1173 Protein_3988 Type II secretion system protein E VF
F7D05_RS20380 () 4129724..4131784 - 2061 WP_000498836.1 Type II secretion system protein D VF
F7D05_RS20385 () 4131814..4132773 - 960 WP_050938923.1 Type II secretion system protein C VF
F7D05_RS20390 () 4132791..4133201 - 411 WP_001324279.1 type II secretion system pilot lipoprotein GspS-beta -
F7D05_RS20395 () 4133267..4134076 - 810 WP_001297673.1 Leader peptidase PppA VF
F7D05_RS20400 () 4134224..4138786 - 4563 WP_001034492.1 hypothetical protein VF
F7D05_RS20405 () 4139271..4140953 - 1683 WP_000259303.1 glycolate permease GlcA -
F7D05_RS20410 () 4141309..4143480 - 2172 WP_000084065.1 malate synthase G -
F7D05_RS20415 () 4143502..4143906 - 405 WP_000853256.1 protein GlcG -
F7D05_RS20420 () 4143911..4145134 - 1224 WP_050938924.1 glycolate oxidase subunit GlcF -
F7D05_RS20425 () 4145145..4146197 - 1053 WP_000943057.1 glycolate oxidase subunit GlcE -
F7D05_RS20430 () 4146197..4147696 - 1500 WP_000026117.1 glycolate oxidase subunit GlcD -
F7D05_RS20435 () 4147947..4148711 + 765 WP_001297764.1 transcriptional regulator GlcC -
F7D05_RS20440 () 4148718..4149860 - 1143 WP_000388786.1 DNA-binding protein -
F7D05_RS20445 () 4150222..4151952 + 1731 WP_000262905.1 Putative ligase VF
F7D05_RS20450 () 4151949..4152863 + 915 WP_001077137.1 NAD-dependent epimerase/dehydratase family protein -
F7D05_RS20455 () 4152895..4153143 + 249 WP_000248097.1 acyl carrier protein -
F7D05_RS20460 () 4153143..4154315 + 1173 WP_032264095.1 8-amino-7-oxononanoate synthase VF
F7D05_RS20465 () 4154350..4155429 - 1080 WP_088539159.1 LPS export ABC transporter permease LptG -
F7D05_RS20470 () 4155426..4156496 - 1071 WP_000779644.1 LPS export ABC transporter permease LptF -
F7D05_RS20475 () 4156527..4157087 - 561 WP_001298770.1 YtfJ family protein -
F7D05_RS20480 () 4157099..4157923 - 825 WP_000984977.1 hypothetical protein -
F7D05_RS20485 () 4157923..4159272 - 1350 WP_000896880.1 lipopolysaccharide biosynthesis protein -
F7D05_RS20490 () 4159318..4160076 - 759 WP_000339531.1 ATP-binding protein -
F7D05_RS20495 () 4160108..4160821 - 714 WP_001076228.1 thymidylate kinase -
F7D05_RS20500 () 4160995..4161687 + 693 WP_001190781.1 thymidylate kinase -
F7D05_RS20505 () 4161736..4163235 - 1500 WP_000933261.1 inorganic phosphate transporter PitB -
F7D05_RS20510 () 4163527..4165386 - 1860 WP_021534536.1 bifunctional glutathionylspermidine amidase/synthase -
F7D05_RS20515 () 4165591..4166457 + 867 WP_001298746.1 glutathione-dependent disulfide-bond oxidoreductase -
F7D05_RS20520 () 4166804..4167784 + 981 WP_000399648.1 IS110 family transposase IS621 Transposase
F7D05_RS20525 () 4167906..4168154 - 249 WP_000334896.1 hydrogenase maturation factor HybG -
F7D05_RS20530 () 4168167..4168508 - 342 WP_000544952.1 hydrogenase maturation nickel metallochaperone HypA -
F7D05_RS20535 () 4168501..4168989 - 489 WP_000134014.1 hydrogenase-2 assembly chaperone -
F7D05_RS20540 () 4168982..4169476 - 495 WP_001221953.1 HyaD/HybD family hydrogenase maturation endopeptidase -
F7D05_RS20545 () 4169476..4171179 - 1704 WP_000083065.1 hydrogenase 2 large subunit -
F7D05_RS20550 () 4171176..4172354 - 1179 WP_000017680.1 Ni/Fe-hydrogenase cytochrome b subunit -
F7D05_RS20555 () 4172344..4173330 - 987 WP_001081870.1 hydrogenase 2 operon protein HybA -
F7D05_RS20560 () 4173333..4174451 - 1119 WP_000145410.1 hydrogenase 2 small subunit -
F7D05_RS20565 () 4174640..4174927 - 288 WP_001059136.1 DUF2623 domain-containing protein -
F7D05_RS20570 () 4175046..4175933 - 888 WP_001137768.1 dienelactone hydrolase family protein -
F7D05_RS20575 () 4176090..4177130 + 1041 WP_000262150.1 L-glyceraldehyde 3-phosphate reductase -
F7D05_RS20580 () 4177170..4177664 - 495 WP_000439331.1 TIGR00645 family protein -
F7D05_RS20585 () 4177855..4178739 + 885 WP_000018758.1 putative oxidoreductase YghA VF
F7D05_RS20590 () 4179011..4179436 - 426 WP_001240712.1 TonB system transport protein ExbD -
F7D05_RS20595 () 4179443..4180177 - 735 WP_050938916.1 tol-pal system-associated acyl-CoA thioesterase -
F7D05_RS20600 () 4180429..4181616 + 1188 WP_001320425.1 cystathionine beta-lyase -
F7D05_RS20605 () 4181756..4182415 + 660 WP_000268419.1 DedA family protein -
F7D05_RS20610 () 4182455..4183411 - 957 WP_001389279.1 DNA-binding transcriptional regulator YqhC -
F7D05_RS20615 () 4183548..4184711 + 1164 WP_001058802.1 alcohol dehydrogenase -
F7D05_RS20620 () 4184816..4185643 + 828 WP_000013149.1 2,5-didehydrogluconate reductase DkgA -
F7D05_RS20625 () 4185843..4186769 + 927 WP_021534538.1 YbjP/YqhG family protein -
F7D05_RS20630 () 4186818..4187075 + 258 WP_000848536.1 lipoprotein YqhH -
F7D05_RS20635 () 4187118..4189337 - 2220 WP_000095187.1 YgiQ family radical SAM protein -
F7D05_RS20640 () 4189448..4190860 - 1413 WP_000059395.1 cell division protein FtsP -
F7D05_RS20645 () 4190935..4191672 - 738 WP_000965712.1 1-acylglycerol-3-phosphate O-acyltransferase -
F7D05_RS20650 () 4191905..4194163 - 2259 WP_001281881.1 DNA topoisomerase IV subunit A -
F7D05_RS20655 () 4194709..4195191 - 483 WP_000183481.1 GyrI-like domain-containing protein -
F7D05_RS20660 () 4195244..4195636 - 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
F7D05_RS20665 () 4195788..4196447 + 660 WP_001221502.1 Transcriptional regulatory protein QseB VF
F7D05_RS20670 () 4196444..4197794 + 1351 Protein_4047 two-component system sensor histidine kinase QseC -
F7D05_RS20675 () 4197840..4198172 - 333 WP_000912120.1 DUF2645 family protein -
F7D05_RS20680 () 4198491..4199072 + 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
F7D05_RS20685 () 4199103..4199417 + 315 WP_000958598.1 antibiotic biosynthesis monooxygenase -
F7D05_RS20690 () 4199465..4201357 - 1893 WP_038976822.1 DNA topoisomerase IV subunit B -
F7D05_RS20695 () 4201386..4201967 - 582 WP_000105733.1 esterase YqiA -
F7D05_RS20700 () 4201967..4202794 - 828 WP_000444747.1 3',5'-cyclic-AMP phosphodiesterase -
F7D05_RS20705 () 4202819..4203241 - 423 WP_000833393.1 DUF1249 family protein -
F7D05_RS20710 () 4203242..4203871 - 630 WP_151039376.1 ADP-ribose diphosphatase -
F7D05_RS20715 () 4204076..4205557 + 1482 WP_050938914.1 outer membrane channel protein TolC -
F7D05_RS20720 () 4205705..4206376 + 672 WP_000831543.1 DUF1190 family protein -
F7D05_RS20725 () 4206382..4207542 + 1161 WP_000442860.1 glutathionylspermidine synthase family protein -
F7D05_RS20730 () 4207580..4208368 - 789 WP_001356237.1 4,5-DOPA dioxygenase extradiol -
F7D05_RS20735 () 4208511..4209284 + 774 WP_001295627.1 zinc transporter ZupT -
F7D05_RS20740 () 4209342..4209512 - 171 WP_000469266.1 hypothetical protein -
F7D05_RS20745 () 4209773..4210426 - 654 WP_001076986.1 3,4-dihydroxy-2-butanone-4-phosphate synthase -
F7D05_RS20750 () 4210800..4211090 + 291 WP_001297598.1 IS1182 family transposase ISBusp4 Transposase
F7D05_RS20755 () 4211373..4211924 + 552 WP_001272149.1 putative fimbrial-like protein YbgD VF
F7D05_RS20760 () 4211984..4214488 + 2505 WP_000277119.1 Outer membrane usher protein PapC VF
F7D05_RS20765 () 4214504..4215253 + 750 WP_001269825.1 Chaperone protein PapD VF
F7D05_RS20770 () 4215255..4216319 + 1065 WP_001269793.1 fimbrial protein -
F7D05_RS20775 () 4216362..4216562 - 201 WP_000350095.1 cell surface composition regulator GlgS -
F7D05_RS20780 () 4216831..4217460 + 630 WP_000599947.1 DUF1449 family protein -
F7D05_RS20785 () 4217487..4219148 + 1662 WP_000341046.1 flotillin family protein -
- () 4219345..4219486 - 142 NuclAT_2 - -
- () 4219345..4219486 - 142 NuclAT_2 - -
- () 4219345..4219486 - 142 NuclAT_2 - -
- () 4219345..4219486 - 142 NuclAT_2 - -
- () 4219345..4219486 - 142 NuclAT_8 - -
- () 4219345..4219486 - 142 NuclAT_8 - -
- () 4219345..4219486 - 142 NuclAT_8 - -
- () 4219345..4219486 - 142 NuclAT_8 - -
F7D05_RS20790 () 4219387..4219446 + 60 WP_100249846.1 type I toxin-antitoxin system Ibs family toxin -
- () 4219721..4219862 - 142 NuclAT_7 - -
- () 4219721..4219862 - 142 NuclAT_7 - -
- () 4219721..4219862 - 142 NuclAT_7 - -
- () 4219721..4219862 - 142 NuclAT_7 - -
F7D05_RS20795 () 4219763..4219822 + 60 WP_001387082.1 type I toxin-antitoxin system Ibs family toxin -
F7D05_RS20800 () 4219942..4221375 - 1434 WP_000869178.1 Bifunctional protein HldE VF
F7D05_RS20805 () 4221423..4224263 - 2841 WP_001324258.1 bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase -
F7D05_RS20810 () 4224286..4225587 - 1302 WP_000046281.1 inorganic triphosphatase -
F7D05_RS20815 () 4225829..4226449 + 621 WP_001125331.1 SH3 domain-containing protein -
F7D05_RS20820 () 4226513..4227751 + 1239 WP_050938913.1 fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca -
F7D05_RS20825 () 4227932..4228753 - 822 WP_001281927.1 undecaprenyl-diphosphate phosphatase -
F7D05_RS20830 () 4228844..4229212 - 369 WP_001295541.1 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase -
F7D05_RS20835 () 4229317..4229934 + 618 WP_001272796.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance