MGE detailed information
MGE type: Prophage MGE length: 62168 bp
Accession: NZ_CP044155 Location: 4242610..4304777 Organism: Shigella flexneri strain AR-0424 Replicon: chromosome
Accession: NZ_CP044155 Location: 4242610..4304777 Organism: Shigella flexneri strain AR-0424 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V36_RS21400 () | 4238514..4239152 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| F4V36_RS21405 () | 4239170..4239751 | - | 582 | Protein_4098 | alpha/beta hydrolase | - |
| F4V36_RS21410 () | 4239980..4241176 | + | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| F4V36_RS25665 () | 4241193..4241552 | - | 360 | Protein_4100 | alpha/beta hydrolase | - |
| F4V36_RS21420 () | 4241552..4242472 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| F4V36_RS21425 () | 4242610..4243044 | + | 435 | Protein_4102 | HTH-type transcriptional regulator PgrR | VF |
| F4V36_RS21435 () | 4244349..4244759 | + | 411 | Protein_4104 | YdaU family protein | - |
| F4V36_RS26275 () | 4246525..4246694 | + | 170 | Protein_4106 | hypothetical protein | - |
| F4V36_RS21450 () | 4246840..4247586 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| F4V36_RS21455 () | 4247601..4248023 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| F4V36_RS21460 () | 4248081..4248437 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| F4V36_RS21465 () | 4248530..4248748 | + | 219 | WP_151106435.1 | DUF4014 family protein | - |
| F4V36_RS21470 () | 4248750..4249115 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| F4V36_RS21475 () | 4249112..4249777 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| F4V36_RS21480 () | 4249777..4250142 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 4250527..4250585 | - | 59 | - | - | Antitoxin Detail |
| F4V36_RS21485 () | 4250597..4250752 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| F4V36_RS21500 () | 4252089..4252688 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| F4V36_RS21505 () | 4252688..4252978 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| F4V36_RS21510 () | 4252975..4253529 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| F4V36_RS21515 () | 4253682..4253855 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| F4V36_RS21520 () | 4253917..4255056 | + | 1140 | WP_151106437.1 | IS3 family transposase ISSd1 | Transposase |
| F4V36_RS21525 () | 4255127..4255609 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| F4V36_RS21555 () | 4256243..4257847 | + | 1605 | WP_000615491.1 | hypothetical protein ; Integrase | Integrase |
| F4V36_RS21560 () | 4258471..4259168 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| F4V36_RS21565 () | 4259184..4260089 | + | 906 | Protein_4124 | IS3 family transposase ISSd1 | Transposase |
| F4V36_RS21570 () | 4260117..4260485 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| F4V36_RS21580 () | 4260509..4261053 | + | 545 | Protein_4126 | tail fiber assembly protein | - |
| F4V36_RS21590 () | 4261077..4262344 | + | 1268 | Protein_4127 | prophage tail fiber N-terminal domain-containing protein | - |
| F4V36_RS21595 () | 4262295..4262918 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| F4V36_RS21600 () | 4263119..4263976 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| F4V36_RS21605 () | 4263973..4264830 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| F4V36_RS21610 () | 4264827..4265654 | - | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| F4V36_RS21615 () | 4265654..4266568 | - | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| F4V36_RS21620 () | 4267000..4267641 | - | 642 | Protein_4133 | Putative defective protein IntQ ; Integrase | Integrase |
| F4V36_RS21625 () | 4267695..4268392 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| F4V36_RS21630 () | 4268409..4268579 | - | 171 | Protein_4135 | DUF3596 domain-containing protein | - |
| F4V36_RS21635 () | 4268581..4268748 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| F4V36_RS21640 () | 4268796..4269275 | - | 480 | Protein_4137 | IS3 family transposase IS629 | Transposase |
| F4V36_RS21645 () | 4269359..4270867 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| F4V36_RS21655 () | 4271539..4272274 | - | 736 | Protein_4139 | IS3 family transposase | - |
| F4V36_RS21660 () | 4272349..4273446 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| F4V36_RS21665 () | 4273452..4273712 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| F4V36_RS21670 () | 4273811..4274967 | + | 1157 | Protein_4142 | IS3 family transposase IS600 | Transposase |
| F4V36_RS21675 () | 4275024..4276439 | - | 1416 | Protein_4143 | exodeoxyribonuclease VIII | - |
| F4V36_RS21680 () | 4276539..4276814 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| F4V36_RS21685 () | 4276889..4277059 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| F4V36_RS21690 () | 4277059..4277280 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| F4V36_RS21700 () | 4278627..4279515 | - | 889 | Protein_4148 | Rha family transcriptional regulator | - |
| F4V36_RS25675 () | 4280739..4281119 | + | 381 | Protein_4149 | IS66 family transposase ISSfl3 | Transposase |
| F4V36_RS25680 () | 4281121..4281288 | + | 168 | Protein_4150 | IS66 family transposase ISSfl3 | Transposase |
| F4V36_RS21710 () | 4281239..4281862 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| F4V36_RS26280 () | 4281868..4281972 | + | 105 | Protein_4152 | tail fiber assembly protein | - |
| F4V36_RS21720 () | 4282042..4283757 | - | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| F4V36_RS21730 () | 4284299..4284996 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| F4V36_RS21735 () | 4285276..4285722 | + | 447 | Protein_4155 | metallophosphoesterase | - |
| F4V36_RS21740 () | 4285787..4286943 | + | 1157 | WP_094085510.1 | IS3 family transposase IS600 | Transposase |
| F4V36_RS21745 () | 4286987..4287175 | + | 189 | Protein_4157 | serine/threonine-protein phosphatase | - |
| F4V36_RS21750 () | 4287200..4287391 | - | 192 | WP_005049838.1 | YebW family protein | - |
| F4V36_RS21755 () | 4287496..4287732 | - | 237 | WP_001295499.1 | YebV family protein | - |
| F4V36_RS21760 () | 4287850..4289289 | - | 1440 | Protein_4160 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F4V36_RS21765 () | 4289369..4291989 | - | 2621 | Protein_4161 | hypothetical protein | VF |
| F4V36_RS21770 () | 4291958..4293241 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| F4V36_RS21775 () | 4293371..4293868 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| F4V36_RS21780 () | 4293965..4294663 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| F4V36_RS21785 () | 4294683..4296731 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| F4V36_RS21790 () | 4296923..4297804 | + | 882 | WP_000984517.1 | protease HtpX | - |
| F4V36_RS21795 () | 4297850..4299223 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| F4V36_RS21800 () | 4299400..4300191 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| F4V36_RS21805 () | 4300334..4300573 | - | 240 | WP_001211010.1 | YobH family protein | - |
| F4V36_RS21810 () | 4300732..4300875 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| F4V36_RS21815 () | 4300950..4301237 | + | 288 | WP_001006860.1 | YebO family protein | - |
| F4V36_RS21820 () | 4301908..4302051 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| F4V36_RS21825 () | 4302064..4302273 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| F4V36_RS21830 () | 4302439..4303248 | + | 810 | WP_151106439.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| F4V36_RS21835 () | 4303245..4303811 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| F4V36_RS21845 () | 4305000..4305476 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| F4V36_RS21850 () | 4305531..4306382 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| F4V36_RS21855 () | 4306395..4307195 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| F4V36_RS21860 () | 4307258..4308229 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|