MGE detailed information
MGE type: Conjugative plasmid MGE length: 68601 bp
Accession: NZ_CP042887 Location: 1..68601 Organism: Escherichia coli O10:H32 strain NMBU-W12E19 Replicon: plasmid pNMBU-W12E19_03
Accession: NZ_CP042887 Location: 1..68601 Organism: Escherichia coli O10:H32 strain NMBU-W12E19 Replicon: plasmid pNMBU-W12E19_03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVP48_RS01500 () | 1559..1699 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| FVP48_RS01505 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| FVP48_RS01510 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| FVP48_RS01515 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| FVP48_RS01520 () | 3383..3798 | + | 416 | Protein_5 | IS1 family transposase IS1R | Transposase |
| FVP48_RS01525 () | 3834..4379 | - | 546 | Protein_6 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FVP48_RS01530 () | 4445..5149 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FVP48_RS01535 () | 5161..5310 | - | 150 | WP_158695371.1 | IS6 family transposase IS15 | Transposase |
| FVP48_RS01540 () | 5493..6050 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| FVP48_RS01545 () | 6352..7116 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| FVP48_RS01550 () | 7609..8193 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| FVP48_RS01555 () | 8193..9431 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| FVP48_RS01560 () | 9428..10342 | - | 915 | WP_023063803.1 | hypothetical protein | ARG |
| FVP48_RS01565 () | 10464..11168 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FVP48_RS01570 () | 11234..11299 | + | 66 | Protein_15 | IS1 family transposase | - |
| FVP48_RS01575 () | 12748..12982 | + | 235 | Protein_16 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FVP48_RS01580 () | 13110..13391 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| FVP48_RS01585 () | 13514..13864 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| FVP48_RS01590 () | 13867..14829 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| FVP48_RS01595 () | 14977..15270 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| FVP48_RS01600 () | 15347..16030 | + | 684 | WP_000085883.1 | DNA methylase | - |
| FVP48_RS01605 () | 16031..16252 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| FVP48_RS01610 () | 16266..16700 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| FVP48_RS01615 () | 16751..17515 | + | 765 | Protein_24 | hypothetical protein | - |
| FVP48_RS01620 () | 17400..17972 | + | 573 | WP_011161242.1 | YubH family protein | - |
| FVP48_RS01625 () | 18068..18370 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| FVP48_RS01630 () | 18417..18839 | + | 423 | WP_136754706.1 | DUF1380 family protein | - |
| FVP48_RS01635 () | 18836..19027 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| FVP48_RS01640 () | 20065..20295 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| FVP48_RS01645 () | 20347..21708 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| FVP48_RS01650 () | 21755..22318 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| FVP48_RS01655 () | 22404..22865 | - | 462 | WP_001479900.1 | hypothetical protein | - |
| FVP48_RS01660 () | 23167..23694 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| FVP48_RS01665 () | 23752..23985 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| FVP48_RS01670 () | 24046..26069 | + | 2024 | Protein_35 | ParB/RepB/Spo0J family partition protein | - |
| FVP48_RS01675 () | 26138..26572 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| FVP48_RS01680 () | 26569..27288 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 27300..27524 | + | 225 | NuclAT_0 | - | - |
| - () | 27300..27524 | + | 225 | NuclAT_0 | - | - |
| - () | 27300..27524 | + | 225 | NuclAT_0 | - | - |
| - () | 27300..27524 | + | 225 | NuclAT_0 | - | - |
| FVP48_RS01685 () | 27309..27488 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - () | 27457..27522 | + | 66 | - | - | Antitoxin Detail |
| FVP48_RS01690 () | 27568..27726 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| FVP48_RS01695 () | 28222..28415 | + | 194 | Protein_40 | hypothetical protein | - |
| FVP48_RS01700 () | 28641..28937 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| FVP48_RS01705 () | 29048..29869 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| FVP48_RS01710 () | 30166..30768 | - | 603 | WP_000243713.1 | hypothetical protein | VF |
| FVP48_RS01715 () | 31091..31474 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| FVP48_RS01720 () | 31668..32339 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| FVP48_RS01725 () | 32476..32703 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| FVP48_RS01730 () | 32736..33095 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| FVP48_RS01735 () | 33110..33421 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| FVP48_RS01740 () | 33443..34009 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| FVP48_RS01745 () | 33996..34724 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| FVP48_RS01750 () | 34724..36175 | + | 1452 | WP_000146675.1 | conjugal transfer protein TraB | - |
| FVP48_RS01755 () | 36144..36731 | + | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| FVP48_RS01760 () | 36670..37038 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| FVP48_RS01765 () | 37035..37550 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FVP48_RS01770 () | 37685..37906 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| FVP48_RS01775 () | 37899..38375 | + | 477 | WP_000549587.1 | hypothetical protein | - |
| FVP48_RS01780 () | 38455..38673 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| FVP48_RS01785 () | 38701..39048 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| FVP48_RS01790 () | 39174..41804 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| FVP48_RS01795 () | 41801..42187 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| FVP48_RS01800 () | 42184..42816 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| FVP48_RS01805 () | 42813..43805 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| FVP48_RS01810 () | 43835..44140 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| FVP48_RS01815 () | 44149..44787 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FVP48_RS01820 () | 44784..46634 | + | 1851 | WP_087760847.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FVP48_RS01825 () | 46661..46918 | + | 258 | WP_173002234.1 | conjugal transfer protein TrbE | - |
| FVP48_RS01830 () | 46911..47654 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FVP48_RS01835 () | 47668..48012 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| FVP48_RS01840 () | 48131..48415 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FVP48_RS01845 () | 48402..48947 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FVP48_RS01850 () | 48877..49224 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| FVP48_RS01855 () | 49172..49597 | + | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| FVP48_RS01860 () | 49584..50957 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| FVP48_RS01865 () | 50954..53776 | + | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| FVP48_RS01870 () | 53792..54277 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| FVP48_RS01875 () | 54326..55057 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| FVP48_RS01880 () | 55260..55997 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| FVP48_RS01885 () | 56048..58255 | + | 2208 | WP_001617742.1 | type IV conjugative transfer system coupling protein TraD | - |
| FVP48_RS01890 () | 58255..63525 | + | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| FVP48_RS01895 () | 63545..64291 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| FVP48_RS01900 () | 64350..65210 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| FVP48_RS01905 () | 65313..65873 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| FVP48_RS01910 () | 66002..66214 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| FVP48_RS01915 () | 66396..66497 | + | 102 | Protein_84 | nuclease | - |
| FVP48_RS01920 () | 66966..67175 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| FVP48_RS01925 () | 67213..67803 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| FVP48_RS01930 () | 68043..68297 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|