MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 167256 bp
Accession: NZ_CP042296 Location: 1..167256 Organism: Escherichia coli strain RM9088 Replicon: plasmid p1RM9088
Accession: NZ_CP042296 Location: 1..167256 Organism: Escherichia coli strain RM9088 Replicon: plasmid p1RM9088
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRV13_RS28125 () | 2..96 | - | 95 | Protein_0 | transcriptional regulator | - |
| FRV13_RS00005 () | 163..1601 | - | 1439 | Protein_1 | Hemolysin secretion protein D, plasmid | VF |
| FRV13_RS00010 () | 1605..3725 | - | 2121 | WP_077783243.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| FRV13_RS00015 () | 3775..6768 | - | 2994 | WP_047085495.1 | Hemolysin, chromosomal | VF |
| FRV13_RS00020 () | 6770..7285 | - | 516 | WP_001355427.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| FRV13_RS00025 () | 7644..7817 | - | 174 | Protein_5 | IS3 family transposase | - |
| FRV13_RS00030 () | 7882..8160 | + | 279 | WP_000982737.1 | plasmid pRiA4b ORF-3 family protein | - |
| FRV13_RS00040 () | 8230..8427 | + | 198 | WP_001355426.1 | hypothetical protein | - |
| FRV13_RS00050 () | 8462..8827 | + | 366 | WP_042965833.1 | hypothetical protein | - |
| FRV13_RS00055 () | 8885..9100 | + | 216 | Protein_9 | IS91 family transposase | - |
| FRV13_RS00070 () | 9506..9724 | + | 219 | WP_001355425.1 | Heat-stable enterotoxin ST-IA/ST-P | VF |
| FRV13_RS28130 () | 10572..10781 | + | 210 | WP_157839880.1 | hypothetical protein | - |
| FRV13_RS00085 () | 11055..12268 | + | 1214 | WP_169302185.1 | IS3 family transposase IS629 | Transposase |
| FRV13_RS00090 () | 12312..12552 | + | 241 | Protein_13 | hypothetical protein | - |
| FRV13_RS28135 () | 14769..15107 | - | 339 | WP_170979933.1 | hypothetical protein | - |
| FRV13_RS28140 () | 15262..15399 | - | 138 | Protein_15 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FRV13_RS00110 () | 15438..16646 | - | 1209 | Protein_16 | IS256 family transposase IS1414 | Transposase |
| FRV13_RS00115 () | 16747..17940 | - | 1194 | WP_000170150.1 | 3-hydroxybenzoate 6-monooxygenase | - |
| FRV13_RS00120 () | 17955..18599 | - | 645 | WP_000781198.1 | maleylacetoacetate isomerase | - |
| FRV13_RS00125 () | 18608..19309 | - | 702 | WP_000196048.1 | fumarylacetoacetate hydrolase family protein | - |
| FRV13_RS00130 () | 19325..20353 | - | 1029 | WP_000132382.1 | gentisate 1,2-dioxygenase | - |
| FRV13_RS00135 () | 20365..21723 | - | 1359 | WP_000194204.1 | aromatic acid/H+ symport family MFS transporter | - |
| FRV13_RS00140 () | 21846..22772 | + | 927 | WP_001151754.1 | LysR family transcriptional regulator | - |
| FRV13_RS00145 () | 22843..23540 | + | 698 | Protein_23 | IS1 family transposase IS1G | Transposase |
| FRV13_RS00150 () | 23779..24263 | - | 485 | Protein_24 | IS3 family transposase ISKpn38 | Transposase |
| FRV13_RS00155 () | 24277..25277 | + | 1001 | Protein_25 | IS21 family transposase IS100kyp | Transposase |
| FRV13_RS00160 () | 25274..26045 | + | 772 | Protein_26 | IS21 family transposase IS100kyp | Transposase |
| FRV13_RS00165 () | 26249..26602 | - | 354 | WP_000205483.1 | hypothetical protein | - |
| FRV13_RS00170 () | 26888..29938 | + | 3051 | WP_000395613.1 | formate dehydrogenase-N subunit alpha | - |
| FRV13_RS00175 () | 29951..30838 | + | 888 | WP_001251453.1 | formate dehydrogenase subunit beta | - |
| FRV13_RS00180 () | 30831..31484 | + | 654 | WP_000045939.1 | formate dehydrogenase-N subunit gamma | - |
| FRV13_RS00185 () | 31588..31992 | - | 405 | Protein_31 | IS66 family transposase ISEc47 | Transposase |
| FRV13_RS00190 () | 32035..32187 | - | 153 | Protein_32 | IS66 family transposase IS679 | Transposase |
| FRV13_RS00195 () | 32389..33561 | - | 1173 | WP_001028043.1 | UDP-glucose 6-dehydrogenase | VF |
| FRV13_RS00200 () | 33593..34738 | - | 1146 | WP_052318704.1 | alginate export family protein | - |
| FRV13_RS00205 () | 34915..35928 | - | 1014 | WP_001355418.1 | phosphotransferase | - |
| FRV13_RS00210 () | 35903..37189 | - | 1287 | WP_000930903.1 | aminoglycoside phosphotransferase family protein | - |
| FRV13_RS00215 () | 37179..38993 | - | 1815 | WP_000834219.1 | ABC transporter ATP-binding protein/permease | - |
| FRV13_RS00220 () | 38983..40152 | - | 1170 | WP_001261744.1 | glycosyltransferase family 4 protein | - |
| FRV13_RS00225 () | 40149..41384 | - | 1236 | WP_042966208.1 | glycosyltransferase family 4 protein | - |
| FRV13_RS00230 () | 41407..42567 | - | 1161 | WP_050541220.1 | glycosyl transferase family 28 | - |
| FRV13_RS00235 () | 42939..43376 | - | 438 | Protein_41 | DDE-type integrase/transposase/recombinase | - |
| FRV13_RS00240 () | 43647..47486 | - | 3840 | WP_047084852.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| FRV13_RS00245 () | 47523..48395 | - | 873 | WP_047084853.1 | hypothetical protein | - |
| FRV13_RS00255 () | 48733..49279 | - | 547 | Protein_44 | EAL domain-containing protein | - |
| FRV13_RS00260 () | 49269..49904 | - | 636 | WP_097467459.1 | hypothetical protein | - |
| FRV13_RS00265 () | 49971..50744 | - | 774 | WP_042966204.1 | hypothetical protein | VF |
| FRV13_RS00270 () | 50761..51525 | - | 765 | WP_042966203.1 | hypothetical protein | VF |
| FRV13_RS00275 () | 51556..52353 | - | 798 | WP_042966202.1 | hypothetical protein | VF |
| FRV13_RS00280 () | 52551..53330 | - | 780 | WP_148050542.1 | hypothetical protein | - |
| FRV13_RS00285 () | 53562..54053 | - | 492 | WP_042966200.1 | hypothetical protein | VF |
| FRV13_RS00290 () | 54088..54864 | - | 777 | WP_042966198.1 | Chaperone protein FaeE | VF |
| FRV13_RS00295 () | 54857..57259 | - | 2403 | WP_096987985.1 | Outer membrane usher protein YraJ | VF |
| FRV13_RS00300 () | 57316..57852 | - | 537 | WP_047084850.1 | hypothetical protein | VF |
| FRV13_RS00305 () | 58041..58865 | + | 825 | WP_042966194.1 | Right origin-binding protein | VF |
| FRV13_RS00310 () | 59396..60244 | + | 849 | WP_042966193.1 | Right origin-binding protein | VF |
| FRV13_RS00315 () | 60510..60875 | + | 366 | WP_064753737.1 | hypothetical protein | - |
| FRV13_RS00320 () | 60897..61175 | + | 279 | Protein_57 | IS91 family transposase | - |
| FRV13_RS00325 () | 61247..61504 | + | 258 | Protein_58 | IS3 family transposase IS911 | Transposase |
| FRV13_RS00335 () | 61572..62723 | + | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| FRV13_RS28145 () | 62798..63100 | + | 303 | WP_052319573.1 | IS3 family transposase IS911 | Transposase |
| FRV13_RS00340 () | 63063..63167 | + | 105 | Protein_61 | transposase | - |
| FRV13_RS00350 () | 63410..64243 | + | 834 | Protein_62 | IS110 family transposase ISEc21 | Transposase |
| FRV13_RS00355 () | 64332..64661 | + | 330 | WP_001137792.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS00360 () | 64648..65028 | + | 381 | WP_000957246.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS00365 () | 65071..66654 | + | 1584 | WP_040091524.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS28150 () | 66668..66811 | - | 144 | WP_000877738.1 | hypothetical protein | - |
| FRV13_RS00370 () | 67015..67266 | + | 252 | Protein_67 | IS110 family transposase ISEc21 | Transposase |
| FRV13_RS00375 () | 67283..67591 | + | 309 | Protein_68 | DDE-type integrase/transposase/recombinase | - |
| FRV13_RS00380 () | 67744..68106 | - | 363 | WP_042966386.1 | hypothetical protein | - |
| FRV13_RS00385 () | 68106..68732 | - | 627 | WP_047084734.1 | ParA family protein | - |
| FRV13_RS00390 () | 69253..69634 | - | 382 | Protein_71 | IS3 family transposase | - |
| FRV13_RS00400 () | 70273..71250 | + | 978 | WP_042966383.1 | RepB family plasmid replication initiator protein | - |
| FRV13_RS00405 () | 71535..72275 | - | 741 | WP_042966382.1 | tyrosine-type recombinase/integrase | - |
| FRV13_RS00415 () | 72919..72984 | - | 66 | Protein_74 | type II toxin-antitoxin system ParD family antitoxin | - |
| FRV13_RS00420 () | 73310..73534 | + | 225 | Protein_75 | IS21 family transposase ISEc12 | Transposase |
| FRV13_RS00425 () | 73536..73834 | + | 299 | Protein_76 | IS66 family transposase ISEc23 | Transposase |
| FRV13_RS00430 () | 73851..75017 | - | 1167 | WP_000586177.1 | hypothetical protein | - |
| FRV13_RS00435 () | 75159..75474 | - | 316 | Protein_78 | IS1 family transposase | - |
| FRV13_RS00440 () | 75647..76121 | - | 475 | Protein_79 | IS3 family transposase IS2 | Transposase |
| FRV13_RS00445 () | 76154..76272 | - | 119 | Protein_80 | IS630 family transposase | - |
| FRV13_RS00450 () | 76426..77034 | - | 609 | WP_000870678.1 | hypothetical protein | - |
| FRV13_RS00455 () | 77106..77702 | - | 597 | WP_042966321.1 | hypothetical protein | - |
| FRV13_RS00460 () | 78006..79091 | - | 1086 | WP_000359996.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| FRV13_RS00465 () | 79390..79655 | - | 266 | Protein_84 | IS3 family transposase ISEc17 | Transposase |
| FRV13_RS00470 () | 79693..80565 | - | 873 | Protein_85 | integrase core domain-containing protein | - |
| FRV13_RS00475 () | 80575..80909 | - | 335 | Protein_86 | IS21 family transposase | - |
| FRV13_RS00480 () | 81165..83696 | - | 2532 | WP_042966322.1 | Protein ClpV1 | VF |
| FRV13_RS00485 () | 83700..87104 | - | 3405 | WP_047084735.1 | type VI secretion protein | - |
| FRV13_RS00490 () | 87111..87725 | - | 615 | WP_077783240.1 | hypothetical protein | VF |
| FRV13_RS00495 () | 88229..89244 | - | 1016 | Protein_90 | IS110 family transposase ISEc11 | Transposase |
| FRV13_RS00500 () | 89762..91114 | - | 1353 | WP_042965808.1 | type VI secretion system baseplate subunit TssK | - |
| FRV13_RS00505 () | 91133..91684 | - | 552 | WP_000202243.1 | type VI secretion lipoprotein TssJ | - |
| FRV13_RS00510 () | 91692..92768 | - | 1077 | WP_042965811.1 | hypothetical protein | VF |
| FRV13_RS00515 () | 92772..93071 | - | 300 | WP_032194046.1 | PAAR domain-containing protein | - |
| FRV13_RS00520 () | 93087..93548 | - | 462 | WP_042965813.1 | hypothetical protein | - |
| FRV13_RS00525 () | 93559..95541 | - | 1983 | WP_042965814.1 | type VI secretion system tip protein VgrG | - |
| FRV13_RS00530 () | 95554..96486 | - | 933 | WP_042965817.1 | type VI secretion system baseplate subunit TssG | - |
| FRV13_RS00535 () | 96477..98279 | - | 1803 | WP_042965819.1 | type VI secretion system baseplate subunit TssF | - |
| FRV13_RS00540 () | 98272..98694 | - | 423 | WP_042965821.1 | lysozyme family protein | - |
| FRV13_RS00545 () | 98705..99214 | - | 510 | WP_123000873.1 | type VI secretion protein | - |
| FRV13_RS00550 () | 99221..100699 | - | 1479 | WP_042965824.1 | hypothetical protein | VF |
| FRV13_RS00555 () | 100702..101178 | - | 477 | WP_042965825.1 | hypothetical protein | VF |
| FRV13_RS00560 () | 101716..101937 | - | 222 | WP_047085420.1 | hypothetical protein | - |
| FRV13_RS00565 () | 103232..103387 | - | 156 | Protein_104 | ISKra4 family transposase | - |
| FRV13_RS00570 () | 103447..103943 | + | 497 | Protein_105 | IS3 family transposase IS3H | Transposase |
| FRV13_RS00575 () | 104031..104761 | + | 731 | Protein_106 | IS21 family transposase IS100kyp | Transposase |
| FRV13_RS00580 () | 104826..105581 | - | 756 | WP_096913045.1 | IS21 family transposase ISEc10 | Transposase |
| FRV13_RS00585 () | 105578..107077 | - | 1500 | WP_148050543.1 | IS21 family transposase ISEc10 | Transposase |
| FRV13_RS00590 () | 107172..107468 | + | 297 | Protein_109 | IS21 family transposase IS100kyp | Transposase |
| FRV13_RS00595 () | 107465..108247 | + | 783 | WP_137486424.1 | IS21 family transposase IS100kyp | Transposase |
| FRV13_RS00605 () | 108315..108978 | + | 664 | Protein_111 | IS3 family transposase IS3F | Transposase |
| FRV13_RS00610 () | 109036..110228 | - | 1193 | Protein_112 | IS256 family transposase IS1414 | Transposase |
| FRV13_RS00615 () | 110295..111508 | + | 1214 | WP_169302185.1 | IS3 family transposase IS629 | Transposase |
| FRV13_RS00620 () | 112039..112320 | - | 282 | WP_000220564.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FRV13_RS00625 () | 112310..112561 | - | 252 | WP_000121742.1 | hypothetical protein | Antitoxin Detail |
| FRV13_RS00630 () | 112837..113856 | - | 1020 | WP_096913040.1 | IS110 family transposase ISEc11 | Transposase |
| FRV13_RS00640 () | 114376..115485 | - | 1110 | Protein_117 | IS3 family transposase | - |
| FRV13_RS00645 () | 115565..115960 | - | 396 | Protein_118 | IS256 family transposase IS1414 | Transposase |
| FRV13_RS00650 () | 115991..117562 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00655 () | 117582..117929 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00660 () | 117929..118606 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00670 () | 118659..119075 | - | 417 | Protein_122 | IS256 family transposase IS1414 | Transposase |
| FRV13_RS00675 () | 119246..119866 | - | 621 | WP_000269722.1 | hypothetical protein | - |
| FRV13_RS00680 () | 120150..120362 | - | 213 | WP_001364071.1 | hypothetical protein | - |
| FRV13_RS00685 () | 120523..121032 | - | 510 | WP_042967066.1 | hypothetical protein | - |
| FRV13_RS00690 () | 121341..121545 | - | 205 | Protein_126 | hypothetical protein | - |
| FRV13_RS00695 () | 121664..122065 | - | 402 | WP_148050544.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| FRV13_RS00700 () | 121998..122255 | - | 258 | WP_000557618.1 | type II toxin-antitoxin system antitoxin PemI | - |
| FRV13_RS00705 () | 122348..122548 | - | 201 | Protein_129 | CPBP family intramembrane metalloprotease | - |
| FRV13_RS00710 () | 122629..122865 | + | 237 | WP_000460640.1 | hypothetical protein | - |
| FRV13_RS00720 () | 122915..123775 | + | 861 | WP_042967064.1 | putative protein YcjY | VF |
| FRV13_RS00725 () | 123854..125067 | + | 1214 | WP_169302185.1 | IS3 family transposase IS629 | Transposase |
| FRV13_RS00730 () | 125109..126251 | + | 1143 | Protein_133 | Catalase-peroxidase | VF |
| FRV13_RS00735 () | 126331..126684 | + | 354 | WP_170981746.1 | cytochrome b562 family protein | - |
| FRV13_RS00740 () | 126972..127079 | + | 108 | Protein_135 | IS66 family insertion sequence element accessory protein TnpB | - |
| FRV13_RS00745 () | 127076..127426 | + | 351 | WP_040091173.1 | IS66 family transposase IS682 | Transposase |
| FRV13_RS00750 () | 127967..128368 | - | 402 | WP_137486526.1 | hypothetical protein | - |
| FRV13_RS00755 () | 128450..129040 | - | 591 | WP_042967019.1 | hypothetical protein | VF |
| FRV13_RS00760 () | 129669..130133 | - | 465 | WP_040090730.1 | hypothetical protein | - |
| FRV13_RS00765 () | 130412..131452 | - | 1041 | WP_139320987.1 | hypothetical protein | - |
| FRV13_RS28155 () | 131562..131750 | - | 189 | WP_169301556.1 | hypothetical protein | - |
| FRV13_RS00770 () | 132454..133311 | - | 858 | WP_000829162.1 | incFII family plasmid replication initiator RepA | - |
| FRV13_RS00775 () | 133304..133378 | - | 75 | WP_001364037.1 | RepA leader peptide Tap | - |
| FRV13_RS00785 () | 133622..133870 | - | 249 | WP_000083838.1 | replication regulatory protein RepA | - |
| FRV13_RS00790 () | 134154..134303 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 134351..134407 | + | 57 | NuclAT_0 | - | Antitoxin Detail |
| - () | 134351..134407 | + | 57 | NuclAT_0 | - | Antitoxin Detail |
| - () | 134351..134407 | + | 57 | NuclAT_0 | - | Antitoxin Detail |
| - () | 134351..134407 | + | 57 | NuclAT_0 | - | Antitoxin Detail |
| FRV13_RS00800 () | 134559..135023 | - | 465 | WP_042966773.1 | hypothetical protein | - |
| FRV13_RS00805 () | 135178..135768 | - | 591 | WP_000766788.1 | DUF2726 domain-containing protein | - |
| FRV13_RS00810 () | 135806..136015 | - | 210 | WP_001355319.1 | hemolysin expression modulator Hha | - |
| FRV13_RS00820 () | 136343..136555 | - | 213 | WP_001364091.1 | hypothetical protein | - |
| FRV13_RS00825 () | 136726..137403 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00830 () | 137403..137750 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00835 () | 137770..139341 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS00840 () | 139397..139957 | - | 561 | WP_000139355.1 | fertility inhibition protein FinO | - |
| FRV13_RS00845 () | 140012..140749 | - | 738 | WP_047088734.1 | conjugal transfer pilus acetylase TraX | - |
| FRV13_RS00850 () | 140771..141202 | - | 432 | WP_000447371.1 | hypothetical protein | - |
| FRV13_RS00855 () | 141251..146521 | - | 5271 | WP_148050546.1 | Multifunctional conjugation protein TraI | Relaxase |
| FRV13_RS00860 () | 146521..148461 | - | 1941 | Protein_157 | type IV conjugative transfer system coupling protein TraD | - |
| FRV13_RS00865 () | 148657..150198 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| FRV13_RS00870 () | 150213..150959 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| FRV13_RS00875 () | 151045..151494 | - | 450 | Protein_160 | DNA methylase | - |
| FRV13_RS00880 () | 151573..151874 | - | 302 | Protein_161 | hypothetical protein | - |
| FRV13_RS00885 () | 152012..152974 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| FRV13_RS00890 () | 152977..153327 | + | 351 | WP_024166183.1 | plasmid partitioning/stability family protein | - |
| FRV13_RS00895 () | 153434..153907 | + | 474 | Protein_164 | hypothetical protein | - |
| FRV13_RS00900 () | 154133..154414 | - | 282 | WP_001105063.1 | hypothetical protein | - |
| FRV13_RS00905 () | 154520..154795 | - | 276 | WP_000421249.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FRV13_RS00910 () | 154795..155079 | - | 285 | WP_001355337.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| FRV13_RS28160 () | 155418..155627 | + | 210 | WP_157839880.1 | hypothetical protein | - |
| FRV13_RS00920 () | 155800..156085 | + | 286 | Protein_169 | hypothetical protein | - |
| FRV13_RS00930 () | 157912..158784 | + | 873 | Protein_170 | IS3 family transposase ISKpn38 | Transposase |
| FRV13_RS00935 () | 159040..159417 | - | 378 | Protein_171 | IS256 family transposase IS1414 | Transposase |
| FRV13_RS00940 () | 159538..160104 | - | 567 | WP_042966620.1 | hypothetical protein | - |
| FRV13_RS00945 () | 160373..160498 | - | 126 | Protein_173 | transposase zinc-binding domain-containing protein | - |
| FRV13_RS00950 () | 160532..161478 | + | 947 | Protein_174 | translesion error-prone DNA polymerase V subunit UmuC | - |
| FRV13_RS00955 () | 161480..161896 | - | 417 | WP_001278817.1 | plasmid partitioning/stability family protein | - |
| FRV13_RS00960 () | 161889..162869 | - | 981 | WP_000688515.1 | plasmid segregation protein ParM | - |
| FRV13_RS00965 () | 163282..163590 | - | 309 | WP_000030204.1 | molecular chaperone GroEL | - |
| FRV13_RS00970 () | 163677..164321 | - | 645 | WP_042965839.1 | ParA family protein | - |
| FRV13_RS00975 () | 164501..165308 | - | 808 | Protein_179 | site-specific integrase | - |
| FRV13_RS00980 () | 165309..165398 | - | 90 | Protein_180 | plasmid maintenance protein CcdB | - |
| FRV13_RS00985 () | 165472..165998 | + | 527 | Protein_181 | IS21 family transposase IS640 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|