MGE detailed information
MGE type: Conjugative plasmid MGE length: 106630 bp
Accession: NZ_CP041439 Location: 1..106630 Organism: Escherichia coli strain YPE12 Replicon: plasmid pYPE12-106k
Accession: NZ_CP041439 Location: 1..106630 Organism: Escherichia coli strain YPE12 Replicon: plasmid pYPE12-106k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNP80_RS00015 () | 316..997 | + | 682 | Protein_1 | DNA methylase | - |
| FNP80_RS00020 () | 998..1219 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| FNP80_RS00025 () | 1233..1667 | + | 435 | WP_100285475.1 | DUF1380 family protein | - |
| FNP80_RS25325 () | 1713..2489 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| FNP80_RS00040 () | 3029..3331 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| FNP80_RS00045 () | 3378..3800 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| FNP80_RS00050 () | 3797..3988 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| FNP80_RS00055 () | 4302..5969 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| FNP80_RS00065 () | 7369..7599 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| FNP80_RS00070 () | 7651..9012 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| FNP80_RS00075 () | 9059..9622 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| FNP80_RS00100 () | 10465..10992 | + | 528 | WP_151140338.1 | single-stranded DNA-binding protein | - |
| FNP80_RS00105 () | 11050..11282 | + | 233 | Protein_13 | DUF905 family protein | - |
| FNP80_RS00110 () | 11343..13364 | + | 2022 | Protein_14 | ParB/RepB/Spo0J family partition protein | - |
| FNP80_RS00115 () | 13433..13867 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| FNP80_RS00120 () | 13864..14583 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 14595..14819 | + | 225 | NuclAT_0 | - | - |
| - () | 14595..14819 | + | 225 | NuclAT_0 | - | - |
| - () | 14595..14819 | + | 225 | NuclAT_0 | - | - |
| - () | 14595..14819 | + | 225 | NuclAT_0 | - | - |
| FNP80_RS25330 () | 14604..14783 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| FNP80_RS00125 () | 14863..15021 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| FNP80_RS25335 () | 15259..15636 | - | 378 | Protein_19 | hypothetical protein | - |
| FNP80_RS00145 () | 15936..16232 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| FNP80_RS00150 () | 16343..17164 | + | 822 | WP_151140339.1 | DUF945 domain-containing protein | - |
| FNP80_RS00155 () | 17461..18108 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| FNP80_RS00160 () | 18385..18768 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| FNP80_RS00165 () | 18959..19645 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| FNP80_RS00170 () | 19739..19966 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| FNP80_RS00175 () | 20000..20365 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| FNP80_RS00180 () | 20380..20691 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| FNP80_RS00185 () | 20713..21279 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| FNP80_RS00190 () | 21290..21994 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| FNP80_RS00195 () | 21994..23421 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| FNP80_RS00200 () | 23411..24001 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| FNP80_RS00205 () | 23955..24185 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| FNP80_RS00210 () | 24197..24448 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| FNP80_RS00215 () | 24445..24960 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FNP80_RS00220 () | 25095..25316 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| FNP80_RS00225 () | 25476..28103 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| FNP80_RS00230 () | 28100..28486 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| FNP80_RS00235 () | 28483..29115 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| FNP80_RS00240 () | 29112..30104 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| FNP80_RS00245 () | 30131..30439 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| FNP80_RS00250 () | 30502..31023 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| FNP80_RS00255 () | 31050..31688 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FNP80_RS00260 () | 31685..32056 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| FNP80_RS00265 () | 32082..32504 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| FNP80_RS00270 () | 32501..34351 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FNP80_RS00275 () | 34378..34635 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| FNP80_RS00280 () | 34628..35371 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FNP80_RS00285 () | 35487..35768 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FNP80_RS00290 () | 35755..36300 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FNP80_RS00295 () | 36230..36604 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| FNP80_RS00300 () | 36558..36950 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| FNP80_RS00305 () | 36937..38310 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| FNP80_RS00310 () | 38307..41123 | + | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| FNP80_RS00315 () | 41156..41677 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| FNP80_RS00320 () | 41702..42433 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| FNP80_RS00325 () | 42636..43373 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| FNP80_RS00330 () | 43424..45667 | + | 2244 | WP_072646483.1 | type IV conjugative transfer system coupling protein TraD | - |
| FNP80_RS00335 () | 45667..50937 | + | 5271 | WP_015059021.1 | Multifunctional conjugation protein TraI | Relaxase |
| FNP80_RS00340 () | 50957..51703 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| FNP80_RS00345 () | 51758..52318 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| FNP80_RS00350 () | 52450..52650 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| FNP80_RS00355 () | 53036..53635 | + | 600 | WP_032083981.1 | hypothetical protein | - |
| FNP80_RS00360 () | 53799..54029 | + | 231 | WP_001736714.1 | hypothetical protein | - |
| - () | 54230..54289 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54230..54289 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54230..54289 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54230..54289 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| FNP80_RS00370 () | 54334..54483 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| FNP80_RS00375 () | 54767..55015 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| FNP80_RS00385 () | 55260..55334 | + | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| FNP80_RS00390 () | 55327..56184 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| FNP80_RS00400 () | 57123..57776 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| FNP80_RS00405 () | 57869..58126 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| FNP80_RS00410 () | 58059..58460 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| FNP80_RS00415 () | 58709..59124 | + | 416 | Protein_71 | IS1 family transposase | - |
| FNP80_RS00420 () | 59160..59705 | - | 546 | Protein_72 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FNP80_RS00425 () | 59771..60475 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FNP80_RS00430 () | 60512..61468 | - | 957 | WP_063609966.1 | IS21 family transposase ISEc57 | Transposase |
| FNP80_RS00435 () | 61557..61718 | - | 162 | Protein_75 | IS91 family transposase | - |
| FNP80_RS00440 () | 61830..62135 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| FNP80_RS00445 () | 62163..63377 | - | 1215 | WP_151140340.1 | Bicyclomycin resistance protein | ARG |
| FNP80_RS00450 () | 63561..64478 | - | 918 | WP_129501584.1 | DUF3363 domain-containing protein | - |
| FNP80_RS00455 () | 64509..66002 | - | 1494 | WP_015344975.1 | IS91 family transposase ISVsa3 | Transposase |
| FNP80_RS00460 () | 66213..66437 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| FNP80_RS00465 () | 66510..66719 | + | 210 | Protein_81 | IS6 family transposase IS15DII | Transposase |
| FNP80_RS00470 () | 66750..67046 | + | 297 | Protein_82 | IS6 family transposase IS15DII | Transposase |
| FNP80_RS00475 () | 67277..67618 | - | 342 | WP_004202492.1 | Multiple antibiotic resistance protein MarA | VF |
| FNP80_RS00480 () | 67737..67985 | - | 249 | Protein_84 | IS1380 family transposase ISEcp1 | Transposase |
| FNP80_RS00500 () | 69138..69734 | - | 597 | WP_000583524.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| FNP80_RS00510 () | 69791..69967 | - | 177 | Protein_86 | IS6 family transposase IS26 | Transposase |
| FNP80_RS00515 () | 69956..70759 | + | 804 | Protein_87 | Mobilization protein A | Relaxase |
| FNP80_RS00520 () | 70772..71356 | + | 585 | WP_023281055.1 | mobilization protein MobX | - |
| FNP80_RS00525 () | 71399..74035 | - | 2637 | WP_023281054.1 | DEAD/DEAH box helicase family protein | - |
| FNP80_RS00530 () | 74040..76088 | - | 2049 | WP_023281053.1 | site-specific DNA-methyltransferase | - |
| FNP80_RS00535 () | 76337..76540 | - | 204 | WP_001567330.1 | hypothetical protein | - |
| FNP80_RS00540 () | 76583..76990 | - | 408 | WP_001567331.1 | hypothetical protein | - |
| FNP80_RS00545 () | 77062..77604 | - | 543 | WP_039021303.1 | hypothetical protein | - |
| FNP80_RS00550 () | 77588..78037 | - | 450 | WP_039021304.1 | hypothetical protein | - |
| FNP80_RS00555 () | 78048..78587 | - | 540 | WP_039021305.1 | hypothetical protein | - |
| FNP80_RS25340 () | 79107..79256 | - | 150 | WP_152930637.1 | hypothetical protein | - |
| FNP80_RS25345 () | 79235..79477 | - | 243 | WP_191962793.1 | hypothetical protein | - |
| FNP80_RS00570 () | 79544..80249 | - | 706 | Protein_98 | IS6 family transposase IS15DI | Transposase |
| FNP80_RS00575 () | 80497..80970 | - | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| FNP80_RS00580 () | 81045..81836 | - | 792 | WP_151140344.1 | Streptomycin 3''-adenylyltransferase | ARG |
| FNP80_RS00585 () | 81853..82653 | - | 801 | WP_000846390.1 | Beta-lactamase OXA-10 | ARG |
| FNP80_RS00595 () | 82918..84177 | - | 1260 | WP_012300772.1 | Bicyclomycin resistance protein | ARG |
| FNP80_RS00600 () | 84498..84950 | - | 453 | WP_000237816.1 | hypothetical protein | ARG |
| FNP80_RS00605 () | 85126..85617 | + | 492 | Protein_104 | IS91 family transposase ISAzo26 | Transposase |
| FNP80_RS00610 () | 85661..86366 | - | 706 | Protein_105 | IS6 family transposase IS26 | Transposase |
| FNP80_RS00615 () | 86432..87946 | + | 1515 | Protein_106 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| FNP80_RS00620 () | 88087..88878 | - | 792 | WP_050394548.1 | hypothetical protein | - |
| - () | 89534..89566 | - | 33 | NuclAT_2 | - | - |
| - () | 89534..89566 | - | 33 | NuclAT_2 | - | - |
| - () | 89534..89566 | - | 33 | NuclAT_2 | - | - |
| - () | 89534..89566 | - | 33 | NuclAT_2 | - | - |
| FNP80_RS00630 () | 89849..89932 | + | 84 | WP_000565612.1 | hypothetical protein | - |
| FNP80_RS00635 () | 90087..90731 | - | 645 | WP_001376796.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| FNP80_RS00640 () | 91026..91646 | + | 621 | WP_000864788.1 | ParA family protein | - |
| FNP80_RS00645 () | 91698..91928 | + | 231 | WP_000051066.1 | partitioning protein | - |
| FNP80_RS00655 () | 92352..93416 | + | 1065 | WP_012291478.1 | AAA family ATPase | - |
| FNP80_RS00665 () | 93954..94376 | - | 423 | WP_179292036.1 | DNA distortion polypeptide 3 | - |
| FNP80_RS00670 () | 94444..94890 | - | 447 | WP_001074384.1 | hypothetical protein | - |
| FNP80_RS00675 () | 94894..95736 | - | 843 | WP_063116919.1 | replication initiation protein | - |
| FNP80_RS00680 () | 95757..96596 | - | 840 | WP_024129959.1 | replication initiation protein | - |
| FNP80_RS00690 () | 97831..98082 | + | 252 | WP_000121743.1 | plasmid stabilization protein | - |
| FNP80_RS00695 () | 98072..98353 | + | 282 | WP_000220561.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FNP80_RS00700 () | 98592..98684 | - | 93 | Protein_119 | IS6 family transposase | - |
| FNP80_RS00705 () | 98850..100049 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| FNP80_RS00710 () | 100059..100247 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| FNP80_RS00715 () | 100339..100875 | + | 537 | WP_064441864.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| FNP80_RS00720 () | 101058..101918 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| FNP80_RS00725 () | 102088..102843 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| FNP80_RS00730 () | 102924..103205 | - | 282 | WP_015059004.1 | sodium/hydrogen exchanger | - |
| FNP80_RS00735 () | 103293..103997 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| FNP80_RS00745 () | 104351..104585 | + | 235 | Protein_127 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FNP80_RS00750 () | 104713..104994 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| FNP80_RS00755 () | 105117..105467 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| FNP80_RS00760 () | 105470..106432 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|