MGE detailed information
MGE type: Conjugative plasmid MGE length: 129920 bp
Accession: NZ_CP038792 Location: 1..129920 Organism: Escherichia coli strain PF9285 Replicon: plasmid pDW54_1
Accession: NZ_CP038792 Location: 1..129920 Organism: Escherichia coli strain PF9285 Replicon: plasmid pDW54_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5M00_RS25995 () | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| E5M00_RS26000 () | 1257..1997 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| E5M00_RS26005 () | 2118..2306 | - | 189 | WP_032141192.1 | hypothetical protein | - |
| E5M00_RS26010 () | 2673..3842 | + | 1170 | WP_001072359.1 | hypothetical protein | - |
| E5M00_RS26015 () | 4068..4243 | - | 176 | Protein_4 | IS3 family transposase | - |
| E5M00_RS26020 () | 4689..4961 | - | 273 | WP_071526560.1 | Major pilu subunit operon regulatory protein PapB | VF |
| E5M00_RS26025 () | 5091..6703 | - | 1613 | Protein_6 | IS66 family transposase ISEc43 | Transposase |
| E5M00_RS26030 () | 6734..7084 | - | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| E5M00_RS26035 () | 7081..7197 | - | 117 | Protein_8 | IS66 family insertion sequence element accessory protein TnpB | - |
| E5M00_RS26045 () | 8528..8851 | - | 324 | Protein_10 | IS66 family transposase ISEc43 | Transposase |
| E5M00_RS26050 () | 9182..11152 | + | 1971 | WP_001298664.1 | Hemin receptor | VF |
| E5M00_RS26055 () | 11159..11950 | + | 792 | WP_000977395.1 | DUF4198 domain-containing protein | - |
| E5M00_RS26060 () | 12058..12837 | - | 780 | WP_001297096.1 | IS21 family transposase IS100kyp | Transposase |
| E5M00_RS26065 () | 12837..13865 | - | 1029 | WP_063123570.1 | IS21 family transposase IS100kyp | Transposase |
| E5M00_RS26070 () | 13978..14577 | - | 600 | Protein_15 | IS66 family transposase ISEc22 | Transposase |
| E5M00_RS26075 () | 14577..14777 | + | 201 | Protein_16 | IS3 family transposase IS629 | Transposase |
| E5M00_RS26085 () | 15450..16958 | + | 1509 | WP_029787345.1 | group II intron reverse transcriptase/maturase | - |
| E5M00_RS26090 () | 17048..17521 | + | 474 | Protein_18 | IS3 family transposase IS629 | Transposase |
| E5M00_RS27630 () | 17562..18283 | - | 722 | Protein_19 | Serine protease SepA autotransporter | VF |
| E5M00_RS27485 () | 18278..18599 | - | 322 | Protein_20 | IS3 family transposase IS3H | Transposase |
| E5M00_RS26105 () | 18764..21172 | - | 2409 | WP_024187164.1 | F1 capsule-anchoring protein | VF |
| E5M00_RS26110 () | 21190..21909 | - | 720 | WP_086356572.1 | Chaperone protein caf1M | VF |
| E5M00_RS26115 () | 21976..22482 | - | 507 | WP_001366203.1 | CS3 fimbrial subunit A | VF |
| E5M00_RS26120 () | 22509..22832 | - | 324 | WP_086356573.1 | hypothetical protein | - |
| E5M00_RS26125 () | 23240..23665 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| E5M00_RS26130 () | 23662..24012 | + | 351 | WP_021572985.1 | IS66 family transposase ISEc23 | Transposase |
| E5M00_RS26135 () | 24043..25293 | + | 1251 | Protein_27 | IS66 family transposase ISEc23 | Transposase |
| E5M00_RS26140 () | 25325..26896 | - | 1572 | WP_087086824.1 | IS66 family transposase IS679 | Transposase |
| E5M00_RS26145 () | 26916..27263 | - | 348 | WP_000624626.1 | IS66 family transposase ISCro1 | Transposase |
| E5M00_RS26150 () | 27263..27913 | - | 651 | WP_000993931.1 | IS66 family transposase IS679 | Transposase |
| E5M00_RS26155 () | 28000..28277 | + | 278 | Protein_31 | transposase | - |
| E5M00_RS26160 () | 28306..28926 | + | 621 | Protein_32 | IS5 family transposase IS903 | Transposase |
| E5M00_RS26165 () | 29391..29600 | - | 210 | WP_021512963.1 | P fimbrial regulatory protein KS71A | VF |
| E5M00_RS26175 () | 29830..30530 | + | 701 | Protein_34 | IS1 family transposase | - |
| E5M00_RS26180 () | 30582..30842 | + | 261 | Protein_35 | IS3 family transposase ISSfl10 | Transposase |
| E5M00_RS26190 () | 30906..32057 | + | 1152 | WP_097341503.1 | IS30 family transposase IS30D | Transposase |
| E5M00_RS26195 () | 32070..32327 | - | 258 | Protein_37 | IS3 family transposase ISEc52 | Transposase |
| E5M00_RS26200 () | 32401..32859 | - | 459 | Protein_38 | IS110 family transposase ISEc21 | Transposase |
| E5M00_RS26205 () | 32904..33011 | + | 108 | WP_016232734.1 | transposase | - |
| E5M00_RS26210 () | 33238..33348 | + | 111 | WP_072286114.1 | arylsulfatase | - |
| E5M00_RS26215 () | 33720..34550 | + | 831 | WP_021512957.1 | helix-turn-helix transcriptional regulator | - |
| E5M00_RS26220 () | 34613..35310 | - | 698 | Protein_42 | IS1 family transposase | - |
| E5M00_RS26225 () | 35841..39740 | + | 3900 | WP_001034103.1 | Serine protease EspP | VF |
| E5M00_RS26230 () | 39856..40065 | - | 210 | Protein_44 | IS66 family transposase ISEc23 | Transposase |
| E5M00_RS26235 () | 40062..40487 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| E5M00_RS26240 () | 40574..40930 | - | 357 | Protein_46 | IS5 family transposase ISPan1 | Transposase |
| E5M00_RS26250 () | 41011..41145 | - | 135 | Protein_47 | hypothetical protein | VF |
| E5M00_RS26255 () | 41340..42881 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| E5M00_RS26260 () | 42896..43642 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| E5M00_RS26265 () | 43729..44370 | - | 642 | Protein_50 | hypothetical protein | VF |
| E5M00_RS26270 () | 44387..45151 | - | 765 | WP_021512951.1 | hypothetical protein | VF |
| E5M00_RS26275 () | 45183..45980 | - | 798 | WP_024187169.1 | hypothetical protein | VF |
| E5M00_RS26280 () | 46137..46973 | - | 837 | WP_021512949.1 | K88 fimbrial protein AB | VF |
| E5M00_RS26285 () | 47211..47702 | - | 492 | WP_135798823.1 | hypothetical protein | VF |
| E5M00_RS26290 () | 47737..48528 | - | 792 | WP_021512947.1 | Chaperone protein FaeE | VF |
| E5M00_RS26295 () | 48521..50965 | - | 2445 | WP_021512946.1 | Outer membrane usher protein YraJ | VF |
| E5M00_RS26300 () | 50980..51522 | - | 543 | WP_000793777.1 | hypothetical protein | VF |
| E5M00_RS26305 () | 51530..51829 | - | 300 | WP_000099228.1 | Major pilu subunit operon regulatory protein PapB | VF |
| E5M00_RS26310 () | 52297..52704 | - | 408 | Protein_59 | IS3 family transposase ISSfl10 | Transposase |
| E5M00_RS26315 () | 52762..53459 | + | 698 | Protein_60 | IS1-like element IS1A family transposase | - |
| E5M00_RS26320 () | 53476..53970 | - | 495 | Protein_61 | IS3 family transposase IS600 | Transposase |
| E5M00_RS26325 () | 54032..54787 | + | 756 | Protein_62 | IS30 family transposase IS30D | Transposase |
| E5M00_RS26330 () | 54821..57828 | - | 3008 | Protein_63 | Tn3 family transposase ISEc63 | Transposase |
| E5M00_RS26335 () | 57992..58558 | + | 567 | WP_001235698.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| E5M00_RS26340 () | 58586..59296 | + | 711 | WP_021530386.1 | hypothetical protein | - |
| E5M00_RS26345 () | 59334..59948 | - | 615 | WP_021530387.1 | TIR domain-containing protein | - |
| E5M00_RS26350 () | 60117..60884 | + | 768 | WP_001159649.1 | hypothetical protein | VF |
| E5M00_RS26355 () | 61252..61527 | - | 276 | WP_000421257.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| E5M00_RS26360 () | 61527..61811 | - | 285 | WP_024187170.1 | ribbon-helix-helix protein, CopG family | Antitoxin Detail |
| E5M00_RS26375 () | 62898..63755 | - | 858 | WP_000131011.1 | incFII family plasmid replication initiator RepA | - |
| E5M00_RS26380 () | 63748..63822 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| E5M00_RS26390 () | 64069..64317 | - | 249 | WP_021512942.1 | replication regulatory protein RepA | - |
| E5M00_RS26395 () | 64601..64807 | - | 207 | WP_047649939.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 64794..64855 | + | 62 | NuclAT_0 | - | - |
| - () | 64794..64855 | + | 62 | NuclAT_0 | - | - |
| - () | 64794..64855 | + | 62 | NuclAT_0 | - | - |
| - () | 64794..64855 | + | 62 | NuclAT_0 | - | - |
| E5M00_RS26405 () | 65030..65412 | - | 383 | Protein_74 | hypothetical protein | - |
| E5M00_RS26410 () | 65515..65976 | - | 462 | WP_000760078.1 | thermonuclease family protein | - |
| E5M00_RS26415 () | 66719..66922 | - | 204 | WP_001327131.1 | hypothetical protein | - |
| E5M00_RS26420 () | 67077..67634 | - | 558 | WP_000139312.1 | fertility inhibition protein FinO | - |
| E5M00_RS26425 () | 67737..68597 | - | 861 | WP_000704512.1 | putative protein YcjY | VF |
| E5M00_RS26430 () | 68656..69402 | - | 747 | WP_000205745.1 | conjugal transfer pilus acetylase TraX | - |
| E5M00_RS26435 () | 69422..70549 | - | 1128 | Protein_80 | Multifunctional conjugation protein TraI | Relaxase |
| E5M00_RS26440 () | 72479..72706 | - | 228 | WP_135798825.1 | hypothetical protein | - |
| E5M00_RS26445 () | 73022..74755 | - | 1734 | Protein_82 | AAA family ATPase | - |
| E5M00_RS27635 () | 74735..75268 | - | 534 | Protein_83 | conjugal transfer protein TraD | - |
| E5M00_RS26455 () | 75520..76251 | - | 732 | WP_000850423.1 | complement resistance protein TraT | - |
| E5M00_RS26460 () | 76265..76774 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| E5M00_RS26465 () | 76771..79596 | - | 2826 | WP_053879281.1 | conjugal transfer mating pair stabilization protein TraG | - |
| E5M00_RS26470 () | 79593..80966 | - | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| E5M00_RS26475 () | 80953..81378 | - | 426 | WP_071846683.1 | F-type conjugal transfer protein TrbF | - |
| E5M00_RS26480 () | 81332..81673 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| E5M00_RS26485 () | 81603..82148 | - | 546 | WP_053879282.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E5M00_RS26490 () | 82135..82419 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| E5M00_RS26495 () | 82500..82775 | + | 276 | WP_072164155.1 | toxin ArtA | - |
| E5M00_RS26500 () | 82777..83124 | - | 348 | WP_001287908.1 | conjugal transfer protein TrbA | - |
| E5M00_RS26505 () | 83140..83520 | - | 381 | Protein_94 | conjugal transfer protein TraF | - |
| E5M00_RS26510 () | 83523..83894 | - | 372 | Protein_95 | conjugal transfer protein TraB | - |
| E5M00_RS26515 () | 83894..84598 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| E5M00_RS26520 () | 84609..85175 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| E5M00_RS26525 () | 85197..85508 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| E5M00_RS26530 () | 85523..85888 | - | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| E5M00_RS26535 () | 85922..86149 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| E5M00_RS26540 () | 86243..86929 | - | 687 | WP_000332492.1 | PAS domain-containing protein | - |
| E5M00_RS26545 () | 87119..87502 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| E5M00_RS26555 () | 87837..88427 | + | 591 | WP_169284830.1 | hypothetical protein | VF |
| E5M00_RS26560 () | 88723..89544 | - | 822 | WP_001234490.1 | DUF945 domain-containing protein | - |
| E5M00_RS26565 () | 89663..89950 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| E5M00_RS26570 () | 89975..90181 | - | 207 | WP_000547940.1 | hypothetical protein | - |
| E5M00_RS26575 () | 90251..90778 | + | 528 | WP_033806434.1 | hypothetical protein | - |
| E5M00_RS26580 () | 90748..90939 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| E5M00_RS26585 () | 90936..91358 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| E5M00_RS26590 () | 91405..91707 | - | 303 | WP_072148062.1 | antirestriction protein | - |
| E5M00_RS27640 () | 92243..93019 | - | 777 | WP_001005035.1 | hypothetical protein | - |
| E5M00_RS26605 () | 93065..93619 | - | 555 | WP_077248347.1 | DUF1380 family protein | - |
| E5M00_RS26610 () | 93513..93734 | - | 222 | WP_001104870.1 | hypothetical protein | - |
| E5M00_RS26615 () | 93735..94418 | - | 684 | WP_000085939.1 | DNA methylase | - |
| E5M00_RS26620 () | 94495..94800 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| E5M00_RS26625 () | 94804..95705 | - | 902 | Protein_116 | DUF1281 domain-containing protein | - |
| E5M00_RS26635 () | 96529..97500 | - | 972 | WP_000817035.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| E5M00_RS26640 () | 97500..98666 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| E5M00_RS26645 () | 99254..100009 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| E5M00_RS26650 () | 100783..101589 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| E5M00_RS26655 () | 101590..101895 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E5M00_RS26660 () | 101897..102115 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E5M00_RS26665 () | 102703..102933 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| E5M00_RS26670 () | 102930..103346 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| E5M00_RS26675 () | 103391..107185 | - | 3795 | WP_001144732.1 | hypothetical protein | - |
| E5M00_RS26680 () | 107566..107796 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| E5M00_RS26685 () | 107793..108209 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| E5M00_RS26690 () | 108284..109849 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| E5M00_RS26695 () | 109834..110856 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| E5M00_RS26700 () | 111110..111807 | - | 698 | Protein_130 | IS1 family transposase | - |
| E5M00_RS26705 () | 112187..114388 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| E5M00_RS26710 () | 114470..115747 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| E5M00_RS26715 () | 115744..117486 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| E5M00_RS26720 () | 117486..118433 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| E5M00_RS26725 () | 118434..120158 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| E5M00_RS26730 () | 120294..121487 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| E5M00_RS26735 () | 121867..122247 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| E5M00_RS26745 () | 122588..123001 | - | 414 | Protein_138 | phosphopyruvate hydratase | - |
| E5M00_RS26750 () | 122999..123256 | + | 258 | Protein_139 | Tn3 family transposase | - |
| E5M00_RS26755 () | 123490..124347 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| E5M00_RS26760 () | 124344..125201 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| E5M00_RS26765 () | 125198..126025 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| E5M00_RS26770 () | 126025..126939 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| E5M00_RS26780 () | 127295..127992 | + | 698 | Protein_144 | IS1 family transposase | - |
| E5M00_RS26785 () | 128172..128685 | - | 514 | Protein_145 | DUF4113 domain-containing protein | - |
| E5M00_RS26790 () | 128746..128850 | - | 105 | Protein_146 | AAA family ATPase | - |
| E5M00_RS26795 () | 128852..129175 | - | 324 | Protein_147 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|