MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 47644 bp
Accession: NZ_CP034290 Location: 1584188..1631831 Organism: Vibrio parahaemolyticus strain 20140722001-1 Replicon: chromosome
Accession: NZ_CP034290 Location: 1584188..1631831 Organism: Vibrio parahaemolyticus strain 20140722001-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC64_RS24535 () | 1579378..1579764 | + | 387 | WP_108653711.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EHC64_RS24540 () | 1579773..1582361 | + | 2589 | WP_108653742.1 | type IV secretion system protein TraC | - |
| EHC64_RS24545 () | 1582358..1582705 | + | 348 | WP_029863998.1 | type-F conjugative transfer system protein TrbI | - |
| EHC64_RS24550 () | 1582717..1583382 | + | 666 | WP_164503348.1 | type-F conjugative transfer system protein TraW | - |
| EHC64_RS24555 () | 1583379..1584386 | + | 1008 | WP_108653710.1 | conjugal transfer pilus assembly protein TraU | - |
| EHC64_RS24560 () | 1584398..1584973 | + | 576 | WP_108653709.1 | hypothetical protein | - |
| EHC64_RS24565 () | 1584977..1585585 | + | 609 | WP_108653708.1 | hypothetical protein | - |
| EHC64_RS24570 () | 1585702..1586409 | + | 708 | WP_108653707.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EHC64_RS24575 () | 1586406..1588142 | + | 1737 | WP_108653706.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EHC64_RS24580 () | 1588132..1588956 | + | 825 | WP_108653705.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EHC64_RS24585 () | 1588978..1589391 | + | 414 | WP_108653704.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EHC64_RS24590 () | 1589602..1591011 | + | 1410 | WP_108653703.1 | conjugal transfer protein TraH | - |
| EHC64_RS24595 () | 1591015..1593822 | + | 2808 | WP_108653702.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| EHC64_RS24600 () | 1593902..1594459 | + | 558 | WP_108653701.1 | hypothetical protein | - |
| EHC64_RS24605 () | 1594612..1596705 | + | 2094 | WP_108653700.1 | type IV conjugative transfer system coupling protein TraD | - |
| EHC64_RS24610 () | 1596930..1597673 | + | 744 | WP_108653699.1 | endonuclease | - |
| EHC64_RS24615 () | 1597874..1598023 | + | 150 | WP_108653698.1 | Hok/Gef family protein | - |
| EHC64_RS24620 () | 1598127..1603922 | + | 5796 | WP_108653697.1 | conjugative transfer relaxase/helicase TraI | - |
| EHC64_RS24625 () | 1603943..1604302 | - | 360 | WP_108653741.1 | hypothetical protein | - |
| EHC64_RS24630 () | 1604862..1605305 | - | 444 | WP_031428056.1 | hypothetical protein | VF |
| EHC64_RS24635 () | 1605359..1605701 | - | 343 | Protein_1425 | type I restriction endonuclease subunit M | - |
| EHC64_RS24640 () | 1605775..1606161 | - | 387 | WP_031428057.1 | hypothetical protein | - |
| EHC64_RS24645 () | 1606165..1606545 | - | 381 | WP_031428060.1 | hypothetical protein | - |
| EHC64_RS24650 () | 1607553..1607774 | - | 222 | WP_031428062.1 | hypothetical protein | - |
| EHC64_RS24655 () | 1609197..1609412 | - | 216 | WP_031428064.1 | hypothetical protein | - |
| EHC64_RS24660 () | 1609961..1610455 | - | 495 | WP_031428066.1 | hypothetical protein | - |
| EHC64_RS24665 () | 1610855..1611127 | - | 273 | WP_159404360.1 | hypothetical protein | - |
| EHC64_RS24670 () | 1611683..1612285 | + | 603 | WP_031428068.1 | DUF2913 family protein | - |
| EHC64_RS24675 () | 1612321..1612809 | - | 489 | WP_031428070.1 | DNA repair protein RadC | - |
| EHC64_RS24680 () | 1613659..1614939 | + | 1281 | WP_108653694.1 | SgrR family transcriptional regulator | - |
| EHC64_RS24685 () | 1615006..1615371 | + | 366 | WP_031428075.1 | hypothetical protein | - |
| EHC64_RS24690 () | 1615715..1616653 | - | 939 | WP_031428077.1 | DMT family transporter | - |
| EHC64_RS24695 () | 1616757..1617638 | + | 882 | WP_108653693.1 | HTH-type transcriptional regulator CatM | VF |
| EHC64_RS24700 () | 1617842..1618330 | - | 489 | WP_108653692.1 | DUF523 domain-containing protein | - |
| EHC64_RS24705 () | 1618448..1618984 | - | 537 | WP_108653691.1 | ClbS/DfsB family four-helix bundle protein | - |
| EHC64_RS24710 () | 1619052..1619120 | - | 69 | WP_080254664.1 | DUF3265 domain-containing protein | - |
| EHC64_RS24715 () | 1619195..1619443 | + | 249 | WP_025611568.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| EHC64_RS24720 () | 1619433..1619723 | + | 291 | WP_108653690.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EHC64_RS24725 () | 1619876..1620145 | - | 270 | WP_029865924.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| EHC64_RS24730 () | 1620138..1620392 | - | 255 | WP_029865959.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| EHC64_RS24735 () | 1620494..1620586 | - | 93 | WP_140321407.1 | DUF3265 domain-containing protein | - |
| EHC64_RS24740 () | 1620701..1621669 | + | 969 | WP_159404068.1 | IS30 family transposase ISVa6 | Transposase |
| EHC64_RS24745 () | 1622135..1622284 | - | 150 | WP_108654761.1 | DUF3265 domain-containing protein | - |
| EHC64_RS24750 () | 1622259..1622726 | - | 468 | WP_108654760.1 | NUDIX domain-containing protein | - |
| EHC64_RS24755 () | 1622832..1623824 | - | 993 | WP_108654759.1 | hypothetical protein | - |
| EHC64_RS24760 () | 1624538..1625608 | + | 1071 | WP_108653902.1 | hypothetical protein | - |
| EHC64_RS24765 () | 1625741..1626571 | + | 831 | WP_108653901.1 | hypothetical protein | - |
| EHC64_RS24770 () | 1626576..1626905 | + | 330 | WP_031428126.1 | hypothetical protein | - |
| EHC64_RS24775 () | 1627112..1628188 | - | 1077 | WP_159408174.1 | glycerol dehydrogenase | - |
| EHC64_RS24780 () | 1628247..1629647 | - | 1401 | WP_102780305.1 | aldehyde dehydrogenase family protein | - |
| EHC64_RS24785 () | 1629665..1630438 | - | 774 | WP_159408175.1 | FIST C-terminal domain-containing protein | - |
| EHC64_RS24790 () | 1630478..1630855 | - | 378 | WP_159408176.1 | hypothetical protein | - |
| EHC64_RS24795 () | 1631180..1631869 | - | 690 | WP_159404364.1 | EAL domain-containing protein | - |
| EHC64_RS24800 () | 1631880..1632926 | - | 1047 | WP_131162729.1 | hypothetical protein | - |
| EHC64_RS24805 () | 1632923..1633591 | - | 669 | WP_031428140.1 | molecular chaperone | - |
| EHC64_RS24810 () | 1633570..1636047 | - | 2478 | WP_159404366.1 | hypothetical protein | - |
| EHC64_RS24815 () | 1636136..1636681 | - | 546 | WP_031428144.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|