MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 158819 bp
Accession: NZ_CP033158 Location: 1524833..1683651 Organism: Escherichia coli strain CM IVRI KOL-1 Replicon: chromosome
Accession: NZ_CP033158 Location: 1524833..1683651 Organism: Escherichia coli strain CM IVRI KOL-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAF06_RS07210 () | 1520128..1521384 | + | 1257 | WP_001049791.1 | nucleoside permease NupG | - |
| EAF06_RS07215 () | 1521434..1523569 | - | 2136 | WP_001326492.1 | ornithine decarboxylase | - |
| EAF06_RS07220 () | 1523967..1524674 | + | 708 | WP_000234503.1 | DUF554 domain-containing protein | - |
| EAF06_RS07230 () | 1525089..1526159 | - | 1071 | WP_000654298.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EAF06_RS07235 () | 1526175..1527767 | - | 1593 | WP_000938200.1 | TraI domain-containing protein | - |
| EAF06_RS07240 () | 1527943..1528269 | - | 327 | WP_012368427.1 | hypothetical protein | - |
| EAF06_RS07245 () | 1528413..1529414 | - | 1002 | WP_004245726.1 | DUF1281 domain-containing protein | - |
| EAF06_RS07250 () | 1529499..1529798 | - | 300 | WP_001038587.1 | TA system toxin CbtA family protein | - |
| EAF06_RS07255 () | 1529808..1530782 | - | 975 | WP_012368428.1 | DUF1738 domain-containing protein | - |
| EAF06_RS07260 () | 1530935..1531582 | - | 648 | WP_004239680.1 | hypothetical protein | - |
| EAF06_RS07265 () | 1531582..1532094 | - | 513 | WP_000542402.1 | hypothetical protein | - |
| EAF06_RS07270 () | 1532205..1532561 | - | 357 | WP_004239684.1 | hypothetical protein | - |
| EAF06_RS07275 () | 1532658..1533080 | - | 423 | WP_000639097.1 | hypothetical protein | - |
| EAF06_RS07280 () | 1533247..1533564 | - | 318 | WP_000171971.1 | hypothetical protein | - |
| EAF06_RS07285 () | 1533646..1533921 | - | 276 | WP_004239688.1 | hypothetical protein | - |
| EAF06_RS07295 () | 1534357..1534968 | - | 612 | WP_000861660.1 | SGNH/GDSL hydrolase family protein | - |
| EAF06_RS07300 () | 1534976..1535884 | - | 909 | WP_004239692.1 | hypothetical protein ; Integrase | Integrase |
| EAF06_RS07305 () | 1536927..1537166 | - | 240 | WP_004245739.1 | hypothetical protein | - |
| EAF06_RS07310 () | 1537248..1537904 | - | 657 | WP_164529480.1 | IS1595 family transposase ISEc75 | Transposase |
| EAF06_RS07320 () | 1538532..1538939 | + | 408 | WP_004239694.1 | DUF3742 family protein | - |
| EAF06_RS07325 () | 1538982..1540496 | - | 1515 | WP_000988923.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| EAF06_RS07330 () | 1540493..1540831 | - | 339 | WP_000160224.1 | hypothetical protein | - |
| EAF06_RS07335 () | 1540832..1542274 | - | 1443 | WP_004239696.1 | integrating conjugative element protein | - |
| EAF06_RS07340 () | 1542289..1543263 | - | 975 | WP_012368435.1 | TIGR03756 family integrating conjugative element protein | - |
| EAF06_RS07345 () | 1543260..1543700 | - | 441 | WP_004239699.1 | TIGR03757 family integrating conjugative element protein | - |
| EAF06_RS07350 () | 1543779..1546004 | - | 2226 | WP_004239700.1 | hypothetical protein | VF |
| EAF06_RS07355 () | 1546099..1548965 | - | 2867 | Protein_1432 | conjugative transfer ATPase | - |
| EAF06_RS07360 () | 1548965..1549402 | - | 438 | WP_004245744.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| EAF06_RS07365 () | 1549399..1549884 | - | 486 | WP_004239705.1 | hypothetical protein | - |
| EAF06_RS07370 () | 1549881..1551377 | - | 1497 | WP_004239706.1 | TIGR03752 family integrating conjugative element protein | - |
| EAF06_RS07375 () | 1551374..1552270 | - | 897 | WP_000023746.1 | TIGR03749 family integrating conjugative element protein | - |
| EAF06_RS07380 () | 1552267..1552911 | - | 645 | WP_000033152.1 | TIGR03746 family integrating conjugative element protein | - |
| EAF06_RS07385 () | 1552904..1553320 | - | 417 | WP_004239708.1 | TIGR03750 family conjugal transfer protein | - |
| EAF06_RS07390 () | 1553333..1553701 | - | 369 | WP_004252323.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| EAF06_RS07395 () | 1553743..1553982 | - | 240 | WP_001070025.1 | TIGR03758 family integrating conjugative element protein | - |
| EAF06_RS07400 () | 1553979..1554305 | - | 327 | WP_004239712.1 | RAQPRD family integrative conjugative element protein | - |
| EAF06_RS07405 () | 1554452..1555060 | + | 609 | WP_004239713.1 | DUF2913 family protein | - |
| EAF06_RS07410 () | 1555148..1555897 | - | 750 | WP_000179437.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| EAF06_RS07415 () | 1555884..1558031 | - | 2148 | WP_164529481.1 | type IV conjugative transfer system coupling protein TraD | - |
| EAF06_RS07425 () | 1558387..1558941 | - | 555 | WP_004245750.1 | integrating conjugative element protein | - |
| EAF06_RS07430 () | 1558931..1559569 | - | 639 | WP_004239718.1 | hypothetical protein | VF |
| EAF06_RS07435 () | 1559582..1560316 | - | 735 | WP_000790124.1 | TIGR03759 family integrating conjugative element protein | - |
| EAF06_RS07440 () | 1560330..1561070 | - | 741 | WP_000149725.1 | hypothetical protein | - |
| EAF06_RS07445 () | 1561067..1561729 | - | 663 | WP_004239720.1 | hypothetical protein | VF |
| EAF06_RS07450 () | 1561901..1562338 | - | 438 | Protein_1450 | IS200/IS605 family transposase | - |
| EAF06_RS07455 () | 1562496..1564483 | - | 1988 | Protein_1451 | TonB-dependent receptor | - |
| EAF06_RS07460 () | 1564740..1565969 | + | 1230 | WP_000974234.1 | hypothetical protein | VF |
| EAF06_RS07465 () | 1566001..1566738 | + | 738 | WP_000371013.1 | class I SAM-dependent methyltransferase | - |
| EAF06_RS07470 () | 1566759..1572863 | + | 6105 | WP_004239721.1 | D-alanine--poly(phosphoribitol) ligase subunit 1 | VF |
| EAF06_RS07475 () | 1572876..1582091 | + | 9216 | WP_004239722.1 | Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE | VF |
| EAF06_RS07480 () | 1582091..1583179 | + | 1089 | WP_000801189.1 | hypothetical protein | VF |
| EAF06_RS07485 () | 1583179..1583952 | + | 774 | WP_004239723.1 | hypothetical protein | VF |
| EAF06_RS07490 () | 1583971..1585737 | + | 1767 | WP_001044024.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EAF06_RS07495 () | 1585730..1587457 | + | 1728 | WP_000588838.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EAF06_RS07500 () | 1587470..1588219 | + | 750 | WP_000071884.1 | hypothetical protein | VF |
| EAF06_RS07505 () | 1588389..1588532 | + | 144 | WP_000482925.1 | hypothetical protein | - |
| EAF06_RS07510 () | 1589441..1589629 | + | 189 | WP_000200567.1 | AlpA family transcriptional regulator | - |
| EAF06_RS24920 () | 1589654..1589767 | + | 114 | Protein_1463 | DUF2857 domain-containing protein | - |
| EAF06_RS07515 () | 1589788..1590740 | + | 953 | Protein_1464 | IS3 family transposase | - |
| EAF06_RS07520 () | 1590951..1592015 | + | 1065 | WP_004239726.1 | IS110 family transposase ISLxx2 | Transposase |
| EAF06_RS07525 () | 1592028..1592243 | + | 216 | Protein_1466 | IS3 family transposase ISLad1 | Transposase |
| EAF06_RS07530 () | 1592256..1592411 | + | 156 | Protein_1467 | ClbS/DfsB family four-helix bundle protein | - |
| EAF06_RS07535 () | 1592764..1593685 | - | 922 | Protein_1468 | DUF1738 domain-containing protein | - |
| EAF06_RS07540 () | 1594133..1596502 | - | 2370 | WP_004239729.1 | TonB-dependent receptor | - |
| EAF06_RS07545 () | 1596513..1598606 | - | 2094 | WP_012368442.1 | TonB-dependent receptor | - |
| EAF06_RS07550 () | 1598973..1599251 | + | 279 | Protein_1471 | IS3 family transposase IS1351 | Transposase |
| EAF06_RS07555 () | 1599513..1599710 | + | 198 | WP_077788456.1 | hypothetical protein | - |
| EAF06_RS07560 () | 1599913..1600149 | - | 237 | WP_001351058.1 | DUF417 family protein | - |
| EAF06_RS07565 () | 1600055..1600273 | - | 219 | WP_071550302.1 | hypothetical protein | VF |
| EAF06_RS07570 () | 1600357..1601028 | - | 672 | Protein_1475 | hypothetical protein | VF |
| EAF06_RS07575 () | 1601155..1601565 | - | 411 | WP_000669584.1 | hypothetical protein | VF |
| EAF06_RS07580 () | 1602411..1602467 | + | 57 | WP_105874332.1 | hypothetical protein | - |
| EAF06_RS07585 () | 1602782..1603093 | + | 312 | WP_004239731.1 | ornithine decarboxylase | - |
| EAF06_RS07590 () | 1603111..1603475 | - | 365 | Protein_1479 | TIGR03759 family integrating conjugative element protein | - |
| EAF06_RS07600 () | 1603883..1604842 | - | 960 | WP_004245766.1 | hypothetical protein | VF |
| EAF06_RS07605 () | 1604863..1605330 | - | 468 | WP_000202155.1 | DUF3577 domain-containing protein | - |
| EAF06_RS07610 () | 1605763..1605963 | + | 201 | WP_000370330.1 | hypothetical protein | - |
| EAF06_RS07615 () | 1606214..1608268 | - | 2055 | WP_004239734.1 | DNA topoisomerase III | - |
| EAF06_RS07620 () | 1608278..1608814 | - | 537 | WP_004239735.1 | hypothetical protein | - |
| EAF06_RS07625 () | 1608862..1609566 | - | 705 | WP_000437242.1 | TIGR03761 family integrating conjugative element protein | - |
| EAF06_RS07630 () | 1609849..1610367 | + | 519 | WP_000115888.1 | hypothetical protein | VF |
| EAF06_RS07635 () | 1610653..1611947 | - | 1295 | Protein_1487 | helix-turn-helix domain-containing protein | - |
| EAF06_RS07640 () | 1612074..1612358 | - | 285 | WP_004239737.1 | hypothetical protein | - |
| EAF06_RS07645 () | 1612348..1612938 | - | 591 | WP_000235333.1 | DUF2857 domain-containing protein | - |
| EAF06_RS07650 () | 1613463..1615112 | - | 1650 | WP_000845359.1 | hypothetical protein | - |
| EAF06_RS07655 () | 1615127..1616479 | - | 1353 | WP_000549132.1 | replicative DNA helicase | - |
| EAF06_RS07660 () | 1616691..1617122 | + | 432 | WP_001095747.1 | hypothetical protein | - |
| EAF06_RS07665 () | 1617200..1618072 | - | 873 | WP_000196965.1 | Iron-sulfur cluster carrier protein | VF |
| EAF06_RS07670 () | 1618397..1619662 | + | 1266 | WP_001218773.1 | hypothetical protein ; Integrase | Integrase |
| EAF06_RS07675 () | 1619984..1621483 | - | 1500 | WP_001672282.1 | phosphoethanolamine transferase | - |
| EAF06_RS07680 () | 1621635..1622375 | - | 741 | WP_001403203.1 | porin family protein | - |
| EAF06_RS07690 () | 1623165..1625321 | + | 2157 | WP_001423135.1 | TerB N-terminal domain-containing protein | - |
| EAF06_RS07695 () | 1625325..1626640 | + | 1316 | Protein_1498 | ATP-binding protein | - |
| EAF06_RS07700 () | 1626637..1628835 | + | 2199 | WP_000093094.1 | DEAD/DEAH box helicase | - |
| EAF06_RS07705 () | 1628883..1629206 | - | 324 | WP_001564033.1 | hypothetical protein | - |
| EAF06_RS07710 () | 1629271..1629915 | - | 645 | WP_001364388.1 | hypothetical protein | - |
| EAF06_RS07715 () | 1629936..1630205 | - | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| EAF06_RS07720 () | 1630284..1630922 | - | 639 | WP_000502858.1 | ParB N-terminal domain-containing protein | - |
| EAF06_RS07725 () | 1630907..1632139 | - | 1233 | WP_022645126.1 | phosphoadenosine phosphosulfate reductase | - |
| EAF06_RS07730 () | 1632280..1632924 | - | 645 | WP_024181942.1 | hypothetical protein | - |
| EAF06_RS07735 () | 1633041..1633907 | - | 867 | WP_039023193.1 | ImpA domain protein | - |
| EAF06_RS07740 () | 1633948..1634388 | - | 441 | WP_001403216.1 | hypothetical protein | VF |
| EAF06_RS07745 () | 1634782..1636527 | - | 1746 | WP_022645125.1 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| EAF06_RS07750 () | 1636670..1636930 | - | 261 | Protein_1509 | transposase | - |
| EAF06_RS07755 () | 1637651..1637842 | + | 192 | WP_001287878.1 | DUF4222 domain-containing protein | - |
| EAF06_RS07760 () | 1637895..1638128 | - | 234 | WP_000124176.1 | hypothetical protein | - |
| EAF06_RS07765 () | 1638224..1638723 | - | 500 | Protein_1512 | DNA-binding protein | - |
| EAF06_RS07770 () | 1639074..1640192 | + | 1119 | WP_000135343.1 | hypothetical protein | VF |
| EAF06_RS07775 () | 1640332..1641018 | + | 687 | WP_022645123.1 | propanediol utilization system phosphotransacylase GrpB | - |
| EAF06_RS07780 () | 1641073..1641830 | + | 758 | Protein_1515 | ethanolamine utilization protein EutJ | - |
| EAF06_RS07785 () | 1641835..1642539 | + | 705 | WP_000370214.1 | propanediol utilization system flavoprotein GrpD | - |
| EAF06_RS07790 () | 1642551..1642820 | + | 270 | WP_000280292.1 | propanediol utilization microcompartment vertex protein GrpE | - |
| EAF06_RS07795 () | 1642848..1643345 | + | 498 | WP_001301167.1 | propanediol utilization system heme-binding protein GrpF | - |
| EAF06_RS07800 () | 1643374..1644570 | + | 1197 | WP_001362987.1 | propanediol utilization system propionate kinase GrpG | - |
| EAF06_RS07805 () | 1644855..1645136 | + | 282 | WP_001301171.1 | propanediol utilization system shell hexameric protein GrpH | - |
| EAF06_RS07810 () | 1645158..1645943 | + | 786 | WP_001205499.1 | propanediol utilization microcompartment protein GrpI | - |
| EAF06_RS07815 () | 1646004..1647521 | + | 1518 | WP_000997839.1 | N-succinylglutamate 5-semialdehyde dehydrogenase | VF |
| EAF06_RS07820 () | 1647545..1647844 | + | 300 | WP_033559819.1 | propanediol utilization system shell hexameric protein GrpK | - |
| EAF06_RS07825 () | 1647855..1648430 | + | 576 | WP_000722279.1 | propanediol utilization system protease GrpL | - |
| EAF06_RS07830 () | 1648479..1651031 | + | 2553 | WP_000890295.1 | glycyl radical diol dehydratase GrpM | - |
| EAF06_RS07835 () | 1651140..1652057 | + | 918 | WP_001044977.1 | glycyl radical diol dehydratase-activating enzyme GrpN | - |
| EAF06_RS07840 () | 1652194..1653099 | + | 906 | WP_001086421.1 | propanediol utilization system permease GrpO | - |
| EAF06_RS07845 () | 1653711..1654080 | + | 370 | Protein_1528 | reverse transcriptase/maturase | - |
| EAF06_RS07850 () | 1654080..1654673 | + | 594 | Protein_1529 | maturase | - |
| EAF06_RS07855 () | 1655256..1656485 | + | 1230 | WP_000792585.1 | propanediol utilization sensor histidine kinase GrpP | - |
| EAF06_RS07860 () | 1656502..1657557 | + | 1056 | WP_000494233.1 | HTH-type transcriptional activator RhaR | VF |
| EAF06_RS07865 () | 1657686..1658837 | + | 1152 | WP_001001003.1 | propanediol utilization system methionine adenosyltransferase GrpR | - |
| EAF06_RS07870 () | 1658882..1659427 | + | 546 | WP_001564047.1 | propanediol utilization system shell hexameric protein GrpS | - |
| EAF06_RS07875 () | 1659784..1660077 | - | 294 | Protein_1534 | helix-turn-helix domain-containing protein | - |
| EAF06_RS07880 () | 1660100..1660750 | - | 651 | WP_001564048.1 | TetR/AcrR family transcriptional regulator | - |
| EAF06_RS07885 () | 1660871..1662028 | - | 1158 | Protein_1536 | Multidrug resistance protein MdtB | VF |
| EAF06_RS07890 () | 1662119..1662385 | + | 267 | Protein_1537 | IS3 family transposase IS2 | Transposase |
| EAF06_RS07895 () | 1662447..1662672 | - | 226 | Protein_1538 | hypothetical protein | - |
| EAF06_RS07900 () | 1662684..1662917 | - | 234 | WP_000958492.1 | AlpA family transcriptional regulator | - |
| EAF06_RS07905 () | 1662986..1663561 | - | 576 | WP_001564054.1 | hypothetical protein | - |
| EAF06_RS07910 () | 1663819..1664385 | - | 567 | WP_001126810.1 | inovirus-type Gp2 protein | - |
| EAF06_RS07915 () | 1665686..1666780 | + | 1095 | WP_000370278.1 | sugar kinase | - |
| EAF06_RS07920 () | 1666799..1668047 | - | 1249 | Protein_1543 | NupC/NupG family nucleoside CNT transporter | - |
| EAF06_RS07930 () | 1668131..1669066 | - | 936 | WP_001290195.1 | pseudouridine-5'-phosphate glycosidase | - |
| EAF06_RS07935 () | 1669059..1669993 | - | 935 | Protein_1545 | pseudouridine kinase | - |
| EAF06_RS07940 () | 1670529..1670981 | - | 453 | WP_000558152.1 | N-acetyltransferase | - |
| EAF06_RS07945 () | 1671502..1672233 | - | 732 | WP_001075495.1 | inovirus Gp2 family protein | - |
| EAF06_RS07950 () | 1672903..1673433 | + | 531 | WP_000778605.1 | hypothetical protein | - |
| EAF06_RS07955 () | 1674596..1675819 | - | 1224 | WP_164529482.1 | hypothetical protein | - |
| EAF06_RS07960 () | 1675920..1676804 | + | 885 | WP_001116795.1 | 50S ribosome-binding GTPase | - |
| EAF06_RS07965 () | 1677007..1677687 | + | 681 | WP_001282921.1 | WYL domain-containing protein | - |
| EAF06_RS07970 () | 1677835..1678512 | + | 678 | WP_001097302.1 | hypothetical protein | - |
| EAF06_RS07975 () | 1678518..1678751 | + | 234 | WP_001278293.1 | DUF905 family protein | - |
| EAF06_RS07980 () | 1678841..1679659 | + | 819 | WP_001175165.1 | DUF945 domain-containing protein | - |
| EAF06_RS07985 () | 1679925..1680404 | + | 480 | WP_057109541.1 | antirestriction protein | - |
| EAF06_RS07990 () | 1680420..1680896 | + | 477 | WP_001186774.1 | RadC family protein | - |
| EAF06_RS07995 () | 1680959..1681180 | + | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| EAF06_RS08000 () | 1681343..1681711 | + | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| EAF06_RS08005 () | 1681801..1682175 | + | 375 | WP_000854765.1 | TA system toxin CbtA family protein | Toxin Detail |
| EAF06_RS08010 () | 1682175..1682378 | + | 204 | WP_001398797.1 | hypothetical protein | - |
| EAF06_RS08015 () | 1682403..1682597 | + | 195 | WP_024181941.1 | DUF957 domain-containing protein | - |
| EAF06_RS08020 () | 1682682..1683524 | + | 843 | WP_022645115.1 | DUF4942 domain-containing protein | - |
| EAF06_RS08025 () | 1683805..1684341 | - | 537 | WP_000942785.1 | GspM family type II secretion system protein YghD | - |
| EAF06_RS08030 () | 1684343..1685521 | - | 1179 | WP_000094991.1 | type II secretion system protein GspL | - |
| EAF06_RS08035 () | 1685518..1686495 | - | 978 | WP_000633209.1 | type II secretion system minor pseudopilin GspK | - |
| EAF06_RS08040 () | 1686498..1687097 | - | 600 | WP_001255034.1 | type II secretion system minor pseudopilin GspJ | - |
| EAF06_RS08045 () | 1687094..1687465 | - | 372 | WP_000820113.1 | type II secretion system minor pseudopilin GspI | - |
| EAF06_RS08050 () | 1687462..1688025 | - | 564 | WP_001115154.1 | type II secretion system minor pseudopilin GspH | - |
| EAF06_RS08055 () | 1688029..1688484 | - | 456 | WP_001087289.1 | type II secretion system major pseudopilin GspG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|