MGE detailed information
MGE type: Prophage MGE length: 65499 bp
Accession: NZ_CP032513 Location: 674341..739839 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Accession: NZ_CP032513 Location: 674341..739839 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T62_RS03450 (670144) | 670144..670896 | - | 753 | WP_001295305.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| D6T62_RS03455 (671099) | 671099..672139 | - | 1041 | WP_000931412.1 | galactose-1-epimerase | - |
| D6T62_RS03460 (672133) | 672133..673281 | - | 1149 | WP_000053437.1 | galactokinase | - |
| D6T62_RS03465 (673285) | 673285..674331 | - | 1047 | WP_000191508.1 | galactose-1-phosphate uridylyltransferase | - |
| D6T62_RS03470 (674341) | 674341..675357 | - | 1017 | WP_001265430.1 | UDP-glucose 4-epimerase | VF |
| D6T62_RS03475 (675618) | 675618..677090 | - | 1473 | WP_000096896.1 | putative ABC transporter ATP-binding protein YlmA | VF |
| D6T62_RS03480 (677158) | 677158..677946 | - | 789 | WP_001147439.1 | molybdenum-dependent transcriptional regulator | - |
| D6T62_RS03485 (678075) | 678075..678224 | + | 150 | WP_000891515.1 | multidrug efflux pump accessory protein AcrZ | - |
| D6T62_RS03490 (678391) | 678391..679164 | + | 774 | WP_000101994.1 | molybdate ABC transporter substrate-binding protein | - |
| D6T62_RS03495 (679164) | 679164..679853 | + | 690 | WP_000604036.1 | molybdate ABC transporter permease subunit | - |
| D6T62_RS03500 (679856) | 679856..680914 | + | 1059 | WP_000891694.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| D6T62_RS03505 (680915) | 680915..681734 | - | 820 | Protein_675 | bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase | - |
| D6T62_RS24220 (681970) | 681970..682683 | - | 714 | WP_050900360.1 | hypothetical protein ; Integrase | Integrase |
| D6T62_RS03515 (682603) | 682603..683300 | + | 698 | WP_252997123.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS03520 (683235) | 683235..684143 | - | 909 | WP_001173291.1 | AAA family ATPase | - |
| D6T62_RS03525 (684149) | 684149..684445 | - | 297 | WP_001277359.1 | host-nuclease inhibitor Gam family protein | - |
| D6T62_RS03530 (684423) | 684423..685760 | - | 1338 | Protein_680 | exodeoxyribonuclease VIII | - |
| D6T62_RS03535 (685823) | 685823..686241 | + | 419 | Protein_681 | IS3 family transposase ISSfl10 | Transposase |
| D6T62_RS03540 (686292) | 686292..687505 | + | 1214 | WP_167701210.1 | IS3 family transposase IS629 | Transposase |
| D6T62_RS03545 (687545) | 687545..689893 | + | 2349 | Protein_683 | toprim domain-containing protein | - |
| D6T62_RS03550 (689968) | 689968..690246 | + | 279 | WP_005067014.1 | hypothetical protein | - |
| D6T62_RS03555 (690243) | 690243..690653 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| D6T62_RS03560 (690650) | 690650..690826 | + | 177 | WP_001254220.1 | NinE family protein | - |
| D6T62_RS03565 (690868) | 690868..691176 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| D6T62_RS03570 (691166) | 691166..691396 | - | 231 | WP_236743520.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D6T62_RS03575 (691409) | 691409..692377 | + | 969 | WP_000961310.1 | Rha family phage regulatory protein | - |
| D6T62_RS03580 (692374) | 692374..692607 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| D6T62_RS03585 (692594) | 692594..693501 | + | 908 | Protein_691 | DNA-binding protein | - |
| D6T62_RS03590 (693512) | 693512..694390 | + | 879 | WP_000988187.1 | ATP-binding protein | - |
| D6T62_RS03595 (694387) | 694387..695634 | + | 1248 | Protein_693 | replicative DNA helicase | - |
| D6T62_RS03600 (695665) | 695665..697266 | - | 1602 | WP_004967149.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS03605 (697286) | 697286..697633 | - | 348 | WP_000631709.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS03610 (697630) | 697630..698304 | - | 675 | WP_024260598.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS24225 (698453) | 698453..698554 | + | 102 | Protein_697 | lysis protein | - |
| D6T62_RS03620 (698643) | 698643..699155 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| D6T62_RS03625 (699350) | 699350..700114 | + | 765 | Protein_699 | hypothetical protein | - |
| D6T62_RS03630 (700065) | 700065..700733 | + | 669 | Protein_700 | PBSX family phage terminase large subunit | - |
| D6T62_RS03635 (700824) | 700824..702052 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| D6T62_RS03640 (702089) | 702089..702214 | + | 126 | WP_000586905.1 | DUF2737 family protein | - |
| D6T62_RS03645 (702211) | 702211..702435 | + | 225 | WP_000034209.1 | ead/Ea22-like family protein | - |
| D6T62_RS03655 (703655) | 703655..703933 | + | 279 | Protein_705 | ead/Ea22-like family protein | - |
| D6T62_RS24230 (704039) | 704039..704155 | + | 117 | Protein_706 | hypothetical protein | - |
| D6T62_RS24235 (704360) | 704360..704473 | + | 114 | WP_238341159.1 | hypothetical protein | - |
| D6T62_RS03665 (704421) | 704421..705128 | + | 708 | WP_032156997.1 | ORF6N domain-containing protein | - |
| D6T62_RS03670 (705450) | 705450..706073 | + | 624 | WP_000203843.1 | antA/AntB antirepressor family protein | - |
| D6T62_RS03675 (706158) | 706158..706376 | + | 219 | WP_001303849.1 | excisionase | - |
| D6T62_RS03680 (706354) | 706354..707424 | + | 1071 | WP_000533643.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| D6T62_RS03685 (707559) | 707559..708842 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| D6T62_RS03690 (708983) | 708983..711163 | - | 2181 | WP_000593939.1 | hydratase | - |
| D6T62_RS03695 (711346) | 711346..711513 | - | 168 | Protein_714 | anion permease | - |
| D6T62_RS03705 (712285) | 712285..713588 | - | 1304 | Protein_716 | anion permease | - |
| D6T62_RS03710 (713664) | 713664..714716 | - | 1053 | WP_000723652.1 | 4-oxalomesaconate tautomerase | - |
| D6T62_RS03715 (714807) | 714807..715504 | + | 698 | WP_252997124.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS03720 (715677) | 715677..716630 | + | 954 | Protein_719 | LysR family transcriptional regulator | - |
| D6T62_RS03725 (716671) | 716671..717666 | - | 996 | WP_000815444.1 | 6-phosphogluconolactonase | - |
| D6T62_RS03740 (718786) | 718786..718923 | + | 138 | Protein_722 | tail assembly protein | - |
| D6T62_RS03745 (718984) | 718984..722463 | + | 3480 | WP_000515523.1 | host specificity protein J | - |
| D6T62_RS03750 (722531) | 722531..723130 | + | 600 | WP_001233104.1 | Attachment invasion locus protein | VF |
| D6T62_RS03755 (723194) | 723194..724609 | + | 1416 | WP_134799978.1 | prophage tail fiber N-terminal domain-containing protein | - |
| D6T62_RS03760 (724560) | 724560..725183 | + | 624 | WP_000551131.1 | DUF4376 domain-containing protein | - |
| D6T62_RS24240 (725189) | 725189..725293 | + | 105 | Protein_727 | tail fiber assembly protein | - |
| D6T62_RS03770 (725363) | 725363..727126 | - | 1764 | WP_000805588.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| D6T62_RS03775 (727218) | 727218..727304 | + | 87 | Protein_729 | transposase | - |
| D6T62_RS03780 (727314) | 727314..727394 | - | 81 | Protein_730 | hypothetical protein | - |
| D6T62_RS03785 (727597) | 727597..728534 | + | 938 | Protein_731 | IS3 family transposase | - |
| D6T62_RS03790 (728576) | 728576..728878 | - | 303 | Protein_732 | phage head-binding domain-containing protein | - |
| D6T62_RS03795 (729014) | 729014..730855 | - | 1842 | WP_005067134.1 | hypothetical protein | - |
| D6T62_RS03800 (730855) | 730855..732261 | - | 1407 | WP_000246933.1 | phage DNA ejection protein | - |
| D6T62_RS03805 (732271) | 732271..732852 | - | 582 | Protein_735 | DNA transfer protein | - |
| D6T62_RS03815 (734176) | 734176..734601 | + | 426 | WP_000922287.1 | glycosyl hydrolase family 28-related protein | - |
| D6T62_RS03820 (734612) | 734612..735313 | - | 702 | Protein_738 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS03825 (735233) | 735233..736513 | + | 1281 | WP_005115081.1 | hypothetical protein | - |
| D6T62_RS03830 (736547) | 736547..737548 | - | 1002 | WP_000549610.1 | acyltransferase | - |
| D6T62_RS03835 (737704) | 737704..737787 | - | 84 | Protein_741 | hypothetical protein | - |
| D6T62_RS03840 (738102) | 738102..738572 | - | 471 | WP_000680095.1 | kinase inhibitor | - |
| D6T62_RS03845 (738550) | 738550..739839 | - | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| D6T62_RS03850 (739926) | 739926..740966 | + | 1041 | WP_000951214.1 | biotin synthase BioB | - |
| D6T62_RS03855 (740963) | 740963..742117 | + | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| D6T62_RS03860 (742104) | 742104..742859 | + | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| D6T62_RS03865 (742852) | 742852..743529 | + | 678 | WP_000044870.1 | dethiobiotin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|