MGE detailed information
MGE type: Genomic_island MGE length: 82191 bp
Accession: NZ_CP032513 Location: 2062146..2144336 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Accession: NZ_CP032513 Location: 2062146..2144336 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T62_RS11150 (2058498) | 2058498..2059655 | + | 1158 | WP_001070350.1 | glucans biosynthesis protein MdoC | - |
| D6T62_RS11155 (2059663) | 2059663..2061144 | - | 1482 | Protein_2133 | cardiolipin synthase ClsC | - |
| D6T62_RS11160 (2061086) | 2061086..2061619 | - | 534 | WP_000857405.1 | O-acetyl-ADP-ribose deacetylase | - |
| D6T62_RS11165 (2061714) | 2061714..2062025 | - | 312 | Protein_2135 | type 1 fimbrial protein | - |
| D6T62_RS11170 (2062146) | 2062146..2062478 | - | 333 | WP_000992821.1 | Curli assembly protein CsgC | VF |
| D6T62_RS11175 (2062537) | 2062537..2062803 | - | 267 | Protein_2137 | Major curlin subunit | VF |
| D6T62_RS11180 (2062897) | 2062897..2064125 | + | 1229 | WP_167701219.1 | IS3 family transposase IS2 | Transposase |
| D6T62_RS11185 (2064137) | 2064137..2064220 | - | 84 | Protein_2139 | curlin | - |
| D6T62_RS11195 (2065487) | 2065487..2065594 | - | 108 | Protein_2141 | Major curlin subunit | VF |
| D6T62_RS11200 (2065635) | 2065635..2066090 | - | 456 | WP_000791650.1 | Minor curlin subunit | VF |
| D6T62_RS11205 (2066844) | 2066844..2067494 | + | 651 | WP_000481500.1 | CsgBAC operon transcriptional regulatory protein | VF |
| D6T62_RS11210 (2067499) | 2067499..2067888 | + | 390 | WP_000833288.1 | Curli production assembly/transport component CsgE | VF |
| D6T62_RS11215 (2067913) | 2067913..2068329 | + | 417 | WP_001264090.1 | Curli production assembly/transport component CsgF | VF |
| D6T62_RS11220 (2068356) | 2068356..2069131 | + | 776 | Protein_2146 | Curli production assembly/transport component CsgG | VF |
| D6T62_RS11225 (2069195) | 2069195..2069686 | - | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| D6T62_RS11230 (2069788) | 2069788..2070342 | - | 555 | WP_001001917.1 | molecular chaperone YcdY | - |
| D6T62_RS11235 (2070366) | 2070366..2071103 | - | 738 | WP_000283664.1 | zinc-binding phosphatase | - |
| D6T62_RS11240 (2071158) | 2071158..2072096 | - | 939 | Protein_2150 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| D6T62_RS11250 (2072567) | 2072567..2072848 | - | 282 | Protein_2151 | DUF4942 domain-containing protein | - |
| D6T62_RS11255 (2073130) | 2073130..2074134 | - | 1005 | WP_134800001.1 | IS110 family transposase ISSfl8 | Transposase |
| D6T62_RS11260 (2074206) | 2074206..2074766 | - | 561 | Protein_2153 | DUF4942 domain-containing protein | - |
| D6T62_RS11265 (2074851) | 2074851..2075048 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| D6T62_RS11270 (2075060) | 2075060..2075551 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| D6T62_RS11275 (2075548) | 2075548..2075922 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| D6T62_RS11280 (2075969) | 2075969..2076343 | - | 375 | WP_001280959.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| D6T62_RS11285 (2076506) | 2076506..2076727 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| D6T62_RS11290 (2076790) | 2076790..2077266 | - | 477 | WP_005011624.1 | RadC family protein | - |
| D6T62_RS11295 (2077282) | 2077282..2077755 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| D6T62_RS11305 (2078097) | 2078097..2078918 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| D6T62_RS11310 (2079018) | 2079018..2079191 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| D6T62_RS24485 (2079311) | 2079311..2079574 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| D6T62_RS11325 (2080669) | 2080669..2081739 | - | 1071 | WP_000021107.1 | hypothetical protein | VF |
| D6T62_RS11330 (2081736) | 2081736..2082641 | - | 906 | WP_000203522.1 | diguanylate cyclase regulator RdcB family protein | - |
| D6T62_RS11335 (2082638) | 2082638..2085022 | - | 2385 | WP_000544701.1 | dynamin family protein | - |
| D6T62_RS11340 (2085240) | 2085240..2086112 | - | 873 | WP_001069775.1 | GTPase family protein | - |
| D6T62_RS11345 (2086443) | 2086443..2086625 | + | 183 | WP_000282124.1 | hypothetical protein | - |
| D6T62_RS11350 (2086854) | 2086854..2086928 | - | 75 | Protein_2170 | IS66 family insertion sequence element accessory protein TnpB | - |
| D6T62_RS11355 (2086925) | 2086925..2087350 | - | 426 | WP_000422755.1 | IS66 family transposase ISEc23 | Transposase |
| D6T62_RS11360 (2088468) | 2088468..2088980 | - | 513 | WP_000290499.1 | hypothetical protein | VF |
| D6T62_RS11365 (2089015) | 2089015..2089299 | - | 285 | Protein_2173 | hypothetical protein | VF |
| D6T62_RS11375 (2090610) | 2090610..2091019 | - | 410 | Protein_2175 | transposase | - |
| D6T62_RS11380 (2091104) | 2091104..2091585 | - | 482 | Protein_2176 | type I restriction endonuclease | - |
| D6T62_RS11385 (2091751) | 2091751..2092863 | + | 1113 | WP_000705119.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| D6T62_RS11390 (2092935) | 2092935..2094302 | + | 1368 | WP_001139133.1 | MFS transporter | - |
| D6T62_RS11395 (2094352) | 2094352..2095095 | + | 744 | WP_005067636.1 | Crp/Fnr family transcriptional regulator | - |
| D6T62_RS11400 (2095347) | 2095347..2095637 | - | 291 | WP_000624715.1 | IS66 family transposase ISEc23 | Transposase |
| D6T62_RS11405 (2095634) | 2095634..2096059 | - | 426 | WP_000422761.1 | IS66 family transposase ISEc23 | Transposase |
| D6T62_RS11410 (2096146) | 2096146..2096361 | + | 216 | Protein_2182 | IS3 family transposase IS629 | Transposase |
| D6T62_RS11415 (2096404) | 2096404..2096743 | - | 340 | Protein_2183 | IS481 family transposase ISEc18 | Transposase |
| D6T62_RS11420 (2097059) | 2097059..2097703 | - | 645 | WP_005115541.1 | hypothetical protein | - |
| D6T62_RS11425 (2097724) | 2097724..2097993 | - | 270 | WP_000226519.1 | PerC family transcriptional regulator | - |
| D6T62_RS11430 (2098072) | 2098072..2098710 | - | 639 | WP_000502842.1 | ParB N-terminal domain-containing protein | - |
| D6T62_RS11435 (2098695) | 2098695..2099927 | - | 1233 | WP_001285504.1 | phosphoadenosine phosphosulfate reductase | - |
| D6T62_RS11440 (2100428) | 2100428..2103109 | - | 2682 | WP_000256234.1 | AAA domain-containing protein | - |
| D6T62_RS11445 (2103350) | 2103350..2104396 | - | 1047 | WP_001335711.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| D6T62_RS23965 (2104500) | 2104500..2104649 | - | 150 | WP_000590537.1 | hypothetical protein | - |
| D6T62_RS11450 (2105071) | 2105071..2105262 | + | 192 | WP_001287882.1 | DUF4222 domain-containing protein | - |
| D6T62_RS11455 (2105315) | 2105315..2105548 | - | 234 | WP_000124179.1 | hypothetical protein | - |
| D6T62_RS11460 (2105644) | 2105644..2106267 | - | 624 | WP_001260386.1 | hypothetical protein | - |
| D6T62_RS11465 (2106356) | 2106356..2106865 | - | 510 | WP_001167434.1 | hypothetical protein | - |
| D6T62_RS11475 (2107323) | 2107323..2107781 | + | 459 | WP_001301456.1 | hypothetical protein | - |
| D6T62_RS11480 (2108019) | 2108019..2108716 | + | 698 | WP_225568365.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS11485 (2108710) | 2108710..2108907 | - | 198 | WP_000275179.1 | hypothetical protein | - |
| D6T62_RS11490 (2108995) | 2108995..2109588 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| D6T62_RS11495 (2109701) | 2109701..2110906 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| D6T62_RS11500 (2110988) | 2110988..2111611 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| D6T62_RS11505 (2111589) | 2111589..2112275 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| D6T62_RS11510 (2112283) | 2112283..2112669 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| D6T62_RS11515 (2112662) | 2112662..2112925 | - | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| D6T62_RS11530 (2113898) | 2113898..2114557 | + | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| D6T62_RS11535 (2114758) | 2114758..2115135 | - | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| D6T62_RS11540 (2115202) | 2115202..2118168 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| D6T62_RS11545 (2118171) | 2118171..2118731 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| D6T62_RS11550 (2118857) | 2118857..2119207 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| D6T62_RS11560 (2119410) | 2119410..2120423 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| D6T62_RS11565 (2120583) | 2120583..2121056 | + | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| D6T62_RS11570 (2121149) | 2121149..2121987 | + | 839 | Protein_2212 | Streptomycin 3''-adenylyltransferase | ARG |
| D6T62_RS11575 (2122076) | 2122076..2122773 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| D6T62_RS11580 (2122790) | 2122790..2123278 | + | 489 | Protein_2214 | putative hexosyltransferase CapU | - |
| D6T62_RS11585 (2123283) | 2123283..2124233 | + | 951 | WP_001300030.1 | virulence factor VirK | - |
| D6T62_RS11590 (2124298) | 2124298..2125242 | + | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| D6T62_RS11595 (2125423) | 2125423..2126579 | + | 1157 | WP_094099483.1 | IS3 family transposase ISSd1 | Transposase |
| D6T62_RS11600 (2126733) | 2126733..2128730 | + | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| D6T62_RS11610 (2128793) | 2128793..2130070 | + | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| D6T62_RS11620 (2131579) | 2131579..2131797 | + | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| D6T62_RS11625 (2131848) | 2131848..2132213 | - | 366 | Protein_2222 | IS21 family transposase IS100kyp | Transposase |
| D6T62_RS11630 (2132316) | 2132316..2133055 | + | 740 | Protein_2223 | IS3 family transposase IS629 | Transposase |
| D6T62_RS11640 (2133728) | 2133728..2135236 | + | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| D6T62_RS11645 (2135320) | 2135320..2135799 | + | 480 | Protein_2225 | IS3 family transposase IS629 | Transposase |
| D6T62_RS11650 (2135839) | 2135839..2136180 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| D6T62_RS11655 (2136208) | 2136208..2136770 | - | 563 | Protein_2227 | inovirus Gp2 family protein | - |
| D6T62_RS24490 (2136834) | 2136834..2137180 | - | 347 | Protein_2228 | DEAD/DEAH box helicase | - |
| D6T62_RS11665 (2137287) | 2137287..2137850 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| D6T62_RS11670 (2139225) | 2139225..2141060 | - | 1836 | WP_001258873.1 | hypothetical protein | - |
| D6T62_RS11675 (2141161) | 2141161..2141448 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| D6T62_RS11680 (2141420) | 2141420..2142949 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| D6T62_RS11685 (2143119) | 2143119..2144336 | - | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| D6T62_RS11690 (2144703) | 2144703..2145689 | - | 987 | WP_000611845.1 | protein YcdU | - |
| D6T62_RS11695 (2145686) | 2145686..2145868 | - | 183 | WP_000174725.1 | hypothetical protein | - |
| D6T62_RS11700 (2145887) | 2145887..2146252 | + | 366 | WP_000124119.1 | hypothetical protein | - |
| D6T62_RS11705 (2146252) | 2146252..2147439 | + | 1188 | WP_000937563.1 | IS91-like element ISEc37 family transposase | - |
| D6T62_RS11710 (2147733) | 2147733..2148371 | - | 639 | WP_000191701.1 | HTH-type transcriptional regulator RutR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|