MGE detailed information
MGE type: Prophage MGE length: 58323 bp
Accession: NZ_CP032513 Location: 1700669..1758991 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Accession: NZ_CP032513 Location: 1700669..1758991 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T62_RS09150 () | 1696921..1697316 | - | 396 | Protein_1744 | HlyD family secretion protein | - |
| D6T62_RS09155 () | 1697429..1697617 | + | 189 | WP_000957853.1 | hypothetical protein | - |
| D6T62_RS09160 () | 1697627..1698826 | + | 1200 | WP_000947170.1 | IS91 family transposase | - |
| D6T62_RS09165 () | 1698990..1699637 | - | 648 | WP_000587199.1 | biotin/lipoyl-binding protein | - |
| D6T62_RS09170 () | 1699734..1700420 | + | 687 | Protein_1748 | helix-turn-helix transcriptional regulator | - |
| D6T62_RS09175 () | 1700475..1701172 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS09180 () | 1701182..1701325 | + | 144 | Protein_1750 | helix-turn-helix domain-containing protein | - |
| D6T62_RS24435 () | 1701499..1701715 | - | 217 | Protein_1751 | LysR family transcriptional regulator | - |
| D6T62_RS09185 () | 1701715..1701858 | + | 144 | Protein_1752 | AbgT family transporter | - |
| D6T62_RS09190 () | 1701869..1702384 | + | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| D6T62_RS09195 () | 1702579..1703331 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| D6T62_RS09200 () | 1703483..1704433 | + | 951 | WP_001262136.1 | universal stress protein UspE | - |
| D6T62_RS09205 () | 1704483..1704740 | - | 258 | Protein_1756 | DUF2534 family protein | - |
| D6T62_RS09210 () | 1704940..1705752 | - | 813 | Protein_1757 | IS3 family transposase ISLad1 | Transposase |
| D6T62_RS09215 () | 1705837..1706202 | + | 366 | WP_000124119.1 | hypothetical protein | - |
| D6T62_RS09220 () | 1706202..1707389 | + | 1188 | Protein_1759 | IS91 family transposase ISEc37 | Transposase |
| D6T62_RS09225 () | 1707573..1707937 | - | 365 | Protein_1760 | IS3 family transposase IS911 | Transposase |
| D6T62_RS09230 () | 1708065..1709096 | + | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| D6T62_RS09235 () | 1709147..1710760 | - | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| D6T62_RS09250 () | 1712141..1713055 | + | 915 | WP_000555625.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| D6T62_RS09255 () | 1713055..1713882 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| D6T62_RS09260 () | 1713879..1714736 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| D6T62_RS09265 () | 1714733..1715590 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| D6T62_RS24440 () | 1715791..1715901 | - | 111 | Protein_1768 | DUF4376 domain-containing protein | - |
| D6T62_RS09270 () | 1715938..1717539 | - | 1602 | WP_005067462.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS09275 () | 1717559..1717906 | - | 348 | WP_000631709.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS09280 () | 1717903..1718577 | - | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS09285 () | 1718660..1719798 | + | 1139 | Protein_1772 | IS3 family transposase ISSd1 | Transposase |
| D6T62_RS09295 () | 1719838..1720029 | - | 192 | Protein_1773 | lysozyme | - |
| D6T62_RS09300 () | 1720029..1720233 | - | 205 | Protein_1774 | class II holin family protein | - |
| D6T62_RS09305 () | 1720791..1721959 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| D6T62_RS09310 () | 1722218..1723207 | - | 990 | WP_001057471.1 | hypothetical protein | - |
| D6T62_RS09315 () | 1723291..1723782 | - | 492 | WP_000971492.1 | hypothetical protein | - |
| D6T62_RS09320 () | 1724080..1724760 | - | 681 | WP_000204925.1 | Rha family transcriptional regulator | - |
| D6T62_RS09325 () | 1724836..1726049 | + | 1214 | WP_167701215.1 | IS3 family transposase IS629 | Transposase |
| D6T62_RS24125 () | 1727052..1727660 | - | 609 | WP_000237836.1 | hypothetical protein | - |
| D6T62_RS09340 () | 1727692..1729302 | - | 1611 | WP_000920418.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| D6T62_RS09370 () | 1729956..1730516 | - | 561 | WP_075288213.1 | ORF6N domain-containing protein | - |
| D6T62_RS09375 () | 1730509..1731078 | - | 570 | Protein_1783 | IS3 family transposase ISSd1 | Transposase |
| D6T62_RS09380 () | 1731167..1731532 | + | 366 | WP_000124125.1 | hypothetical protein | - |
| D6T62_RS09385 () | 1731532..1732719 | + | 1188 | Protein_1785 | IS91 family transposase ISEc37 | Transposase |
| D6T62_RS09390 () | 1733130..1733684 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| D6T62_RS09395 () | 1733681..1733971 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| D6T62_RS09400 () | 1733971..1734570 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| D6T62_RS09405 () | 1734704..1735401 | + | 698 | WP_237160603.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS09415 () | 1735907..1736062 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1736074..1736132 | + | 59 | - | - | Antitoxin Detail |
| D6T62_RS09420 () | 1736517..1736882 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| D6T62_RS24445 () | 1736882..1737547 | - | 666 | WP_005115317.1 | hypothetical protein | - |
| D6T62_RS09430 () | 1737547..1737909 | - | 363 | Protein_1793 | HNH endonuclease | - |
| D6T62_RS09435 () | 1737911..1738129 | - | 219 | WP_000256997.1 | DUF4014 family protein | - |
| D6T62_RS09440 () | 1738222..1738578 | - | 357 | WP_000403784.1 | hypothetical protein | - |
| D6T62_RS09445 () | 1738636..1739058 | - | 423 | WP_001118171.1 | DUF977 family protein | - |
| D6T62_RS09450 () | 1739073..1739819 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| D6T62_RS24450 () | 1739965..1740134 | - | 170 | Protein_1798 | hypothetical protein | - |
| D6T62_RS09460 () | 1740658..1741886 | + | 1229 | WP_094106564.1 | IS3 family transposase IS2 | Transposase |
| D6T62_RS09465 () | 1741900..1742310 | - | 411 | Protein_1800 | YdaU family protein | - |
| D6T62_RS09470 () | 1742414..1743570 | + | 1157 | WP_094099483.1 | IS3 family transposase ISSd1 | Transposase |
| D6T62_RS09475 () | 1743615..1744049 | - | 435 | Protein_1802 | HTH-type transcriptional regulator PgrR | VF |
| D6T62_RS09480 () | 1744187..1745107 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| D6T62_RS09485 () | 1745107..1745466 | + | 360 | Protein_1804 | alpha/beta hydrolase | - |
| D6T62_RS09490 () | 1745483..1746679 | - | 1197 | WP_134799998.1 | IS110 family transposase ISSfl4 | Transposase |
| D6T62_RS09495 () | 1746908..1747489 | + | 582 | Protein_1806 | alpha/beta hydrolase | - |
| D6T62_RS09500 () | 1747507..1748145 | + | 639 | Protein_1807 | SDR family oxidoreductase | - |
| D6T62_RS09505 () | 1748436..1749164 | + | 729 | WP_005068481.1 | murein tripeptide amidase MpaA | - |
| D6T62_RS09510 () | 1749139..1750104 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| D6T62_RS09515 () | 1750223..1750729 | + | 507 | WP_000084385.1 | thiol peroxidase | - |
| D6T62_RS09520 () | 1750773..1752314 | - | 1542 | WP_001306544.1 | Transcriptional regulatory protein TyrR | VF |
| D6T62_RS09525 () | 1752462..1753523 | - | 1062 | WP_000138744.1 | YcjF family protein | - |
| D6T62_RS09530 () | 1753520..1754917 | - | 1398 | WP_000825773.1 | YcjX family protein | - |
| D6T62_RS09535 () | 1755073..1756071 | + | 999 | WP_000075372.1 | LacI family DNA-binding transcriptional regulator | - |
| D6T62_RS09540 () | 1756182..1756679 | - | 498 | Protein_1815 | monomeric porin OmpG | - |
| D6T62_RS09545 () | 1756746..1757443 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS09550 () | 1757460..1757864 | - | 405 | Protein_1817 | monomeric porin OmpG | - |
| D6T62_RS09555 () | 1757909..1758991 | - | 1083 | WP_000057968.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| D6T62_RS09560 () | 1759005..1759664 | - | 660 | WP_000775779.1 | beta-phosphoglucomutase | - |
| D6T62_RS09565 () | 1759661..1761928 | - | 2268 | WP_000197979.1 | kojibiose phosphorylase | - |
| D6T62_RS09570 () | 1761925..1762587 | - | 663 | Protein_1821 | Gfo/Idh/MocA family oxidoreductase | - |
| D6T62_RS09575 () | 1762579..1763325 | - | 747 | Protein_1822 | zinc-binding alcohol dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|