MGE detailed information
MGE type: Prophage MGE length: 58671 bp
Accession: NZ_CP032513 Location: 1225149..1283819 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Accession: NZ_CP032513 Location: 1225149..1283819 Organism: Shigella flexneri strain SFL1520 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T62_RS06505 () | 1221179..1221355 | - | 177 | Protein_1241 | hypothetical protein | - |
| D6T62_RS06515 () | 1222124..1222315 | - | 192 | Protein_1243 | hypothetical protein | - |
| D6T62_RS06520 () | 1222386..1222451 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| D6T62_RS06525 () | 1222590..1223201 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| D6T62_RS06530 () | 1223210..1224220 | + | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| D6T62_RS06535 () | 1224367..1225152 | - | 786 | WP_000571470.1 | zinc ABC transporter permease subunit ZnuB | - |
| D6T62_RS06540 () | 1225149..1225904 | - | 756 | WP_000202992.1 | Zinc import ATP-binding protein ZnuC | VF |
| D6T62_RS06545 () | 1225983..1226915 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| D6T62_RS06550 () | 1226931..1228253 | + | 1323 | WP_001184044.1 | murein DD-endopeptidase MepM | - |
| D6T62_RS06555 () | 1228373..1229344 | + | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase 1 | VF |
| D6T62_RS06560 () | 1229475..1230917 | - | 1443 | WP_000044414.1 | pyruvate kinase | - |
| D6T62_RS06565 () | 1231045..1231914 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| D6T62_RS06570 () | 1232252..1233727 | + | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| D6T62_RS06575 () | 1233962..1235773 | + | 1812 | WP_001069457.1 | phosphogluconate dehydratase | - |
| D6T62_RS06580 () | 1235810..1236451 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| D6T62_RS06585 () | 1236506..1237684 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| D6T62_RS06590 () | 1237818..1238108 | + | 291 | Protein_1258 | DNA damage-inducible protein YebG | - |
| D6T62_RS06595 () | 1238175..1238531 | + | 357 | WP_005068964.1 | protein YebF | - |
| D6T62_RS06600 () | 1238858..1239517 | + | 660 | WP_000024749.1 | tellurite resistance TerB family protein | - |
| D6T62_RS06605 () | 1239726..1241786 | + | 2061 | WP_000936965.1 | oligopeptidase B | - |
| D6T62_RS06610 () | 1241783..1242445 | - | 663 | WP_000944269.1 | exodeoxyribonuclease X | - |
| D6T62_RS06615 () | 1242469..1243125 | - | 657 | WP_000011667.1 | carbon-nitrogen hydrolase family protein YobB | - |
| D6T62_RS06620 () | 1243227..1243457 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| D6T62_RS06625 () | 1243596..1243970 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| D6T62_RS06630 () | 1243974..1244846 | + | 873 | Protein_1266 | copper homeostasis membrane protein CopD | - |
| D6T62_RS06635 () | 1244859..1245200 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1245228..1245462 | - | 235 | - | - | Antitoxin Detail |
| - | 1245358..1245461 | + | 104 | - | - | Toxin Detail |
| D6T62_RS06640 () | 1245593..1246670 | - | 1078 | Protein_1268 | hypothetical protein ; Integrase | Integrase |
| D6T62_RS06645 () | 1246636..1246917 | - | 282 | WP_005127484.1 | excisionase | - |
| D6T62_RS06655 () | 1248291..1248479 | - | 189 | WP_000276807.1 | DUF1187 family protein | - |
| - () | 1248295..1248473 | + | 179 | NuclAT_0 | - | - |
| - () | 1248295..1248473 | + | 179 | NuclAT_0 | - | - |
| - () | 1248295..1248473 | + | 179 | NuclAT_0 | - | - |
| - () | 1248295..1248473 | + | 179 | NuclAT_0 | - | - |
| D6T62_RS06660 () | 1248530..1249627 | - | 1098 | WP_001173297.1 | AAA family ATPase | - |
| D6T62_RS06665 () | 1249633..1249893 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| D6T62_RS06670 () | 1249992..1250719 | + | 728 | Protein_1274 | IS3 family transposase IS600 | Transposase |
| D6T62_RS23860 () | 1250763..1251976 | - | 1214 | Protein_1275 | IS3 family transposase | - |
| D6T62_RS06690 () | 1252031..1252447 | + | 417 | Protein_1276 | IS3 family transposase ISSfl10 | Transposase |
| D6T62_RS06695 () | 1252492..1252617 | - | 126 | Protein_1277 | IS3 family transposase ISSfl10 | Transposase |
| D6T62_RS06700 () | 1252683..1254098 | - | 1416 | Protein_1278 | exodeoxyribonuclease VIII | - |
| D6T62_RS06705 () | 1254198..1254473 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| D6T62_RS06710 () | 1254548..1254718 | - | 171 | WP_094110492.1 | YdaE family protein | - |
| D6T62_RS06715 () | 1254718..1254852 | - | 135 | Protein_1281 | cell division protein FtsZ | - |
| D6T62_RS06730 () | 1255749..1256037 | + | 289 | Protein_1283 | hypothetical protein | - |
| D6T62_RS06735 () | 1256076..1256675 | + | 600 | WP_000940349.1 | DUF1367 family protein | - |
| D6T62_RS06740 () | 1256675..1256965 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| D6T62_RS06745 () | 1256962..1257498 | + | 537 | WP_000640166.1 | DUF1133 family protein | - |
| D6T62_RS06770 () | 1258306..1258521 | + | 216 | WP_000839603.1 | class II holin family protein | - |
| D6T62_RS06775 () | 1258521..1258712 | + | 192 | Protein_1288 | lysozyme | - |
| D6T62_RS23865 () | 1259984..1260364 | + | 381 | Protein_1290 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS23870 () | 1260366..1260533 | + | 168 | Protein_1291 | IS66 family transposase ISSfl3 | Transposase |
| D6T62_RS06795 () | 1260484..1261107 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| D6T62_RS24345 () | 1261113..1261217 | + | 105 | Protein_1293 | tail fiber assembly protein | - |
| D6T62_RS06805 () | 1261287..1262993 | - | 1707 | WP_000936820.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| D6T62_RS06815 () | 1263744..1264229 | + | 486 | Protein_1295 | metallophosphoesterase | - |
| D6T62_RS06820 () | 1264274..1265423 | - | 1150 | Protein_1296 | IS3 family transposase ISSd1 | Transposase |
| D6T62_RS06825 () | 1265445..1265660 | + | 216 | Protein_1297 | serine/threonine-protein phosphatase | - |
| D6T62_RS06830 () | 1265661..1265852 | - | 192 | WP_001296140.1 | YebW family protein | - |
| D6T62_RS06835 () | 1265957..1266193 | - | 237 | WP_005068690.1 | DUF1480 family protein | - |
| D6T62_RS06840 () | 1266311..1267750 | - | 1440 | WP_005068692.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D6T62_RS06845 () | 1267830..1270328 | - | 2499 | WP_005068695.1 | hypothetical protein | VF |
| D6T62_RS06850 () | 1270297..1271581 | - | 1285 | Protein_1302 | membrane integrity lipid transport subunit YebS | - |
| D6T62_RS06855 () | 1271711..1272208 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| D6T62_RS06860 () | 1272305..1273003 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| D6T62_RS06865 () | 1273023..1275071 | + | 2049 | WP_001055798.1 | carboxy terminal-processing peptidase | - |
| D6T62_RS06870 () | 1275263..1276144 | + | 882 | WP_000984517.1 | protease HtpX | - |
| D6T62_RS06875 () | 1276190..1277563 | - | 1374 | WP_001317881.1 | MFS transporter | - |
| D6T62_RS06880 () | 1277740..1278531 | + | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| D6T62_RS06885 () | 1278674..1278913 | - | 240 | WP_001211011.1 | YobH family protein | - |
| D6T62_RS06890 () | 1279072..1279215 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| D6T62_RS06895 () | 1279290..1279577 | + | 288 | WP_001006860.1 | YebO family protein | - |
| D6T62_RS06900 () | 1280247..1280390 | + | 144 | WP_032157072.1 | YobF family protein | - |
| D6T62_RS06905 () | 1280403..1280612 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| D6T62_RS06910 () | 1280778..1281587 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| D6T62_RS06915 () | 1281584..1282150 | - | 567 | WP_005068711.1 | manganese efflux pump MntP | - |
| D6T62_RS06920 () | 1282613..1283314 | - | 702 | Protein_1316 | IS1 family transposase IS1X2 | Transposase |
| D6T62_RS06925 () | 1283343..1283819 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| D6T62_RS06930 () | 1283874..1284725 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| D6T62_RS06935 () | 1284738..1285538 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| D6T62_RS06940 () | 1285601..1286572 | - | 972 | WP_000150515.1 | PTS mannose transporter subunit IIAB | - |
| D6T62_RS06945 () | 1287035..1288585 | + | 1551 | WP_000394968.1 | CNNM family cation transport protein YoaE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|