MGE detailed information
MGE type: Prophage MGE length: 105066 bp
Accession: NZ_CP028687 Location: 2624511..2729576 Organism: Escherichia coli strain 110 Replicon: chromosome
Accession: NZ_CP028687 Location: 2624511..2729576 Organism: Escherichia coli strain 110 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E39_RS28580 () | 2620500..2620547 | + | 48 | WP_211180494.1 | protein YnaN | - |
| C9E39_RS13345 () | 2620561..2621544 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| C9E39_RS28385 () | 2621819..2621989 | + | 171 | WP_001625136.1 | hypothetical protein | - |
| C9E39_RS13355 () | 2622022..2623395 | + | 1374 | WP_000123746.1 | ATP-dependent RNA helicase DbpA | - |
| C9E39_RS13360 () | 2623524..2624459 | - | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| C9E39_RS13365 () | 2624511..2625746 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| C9E39_RS13370 () | 2625748..2625963 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| C9E39_RS13375 () | 2626063..2626251 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 2626067..2626245 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2626067..2626245 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2626067..2626245 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2626067..2626245 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| C9E39_RS13380 () | 2626289..2626438 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C9E39_RS13385 () | 2626494..2627303 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| C9E39_RS13390 () | 2627296..2629896 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| C9E39_RS13395 () | 2629998..2630273 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| C9E39_RS13400 () | 2630348..2630518 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| C9E39_RS13405 () | 2630518..2630739 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| C9E39_RS13410 () | 2631181..2631669 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| C9E39_RS13415 () | 2631666..2631821 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| C9E39_RS13420 () | 2631832..2632011 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| C9E39_RS13430 () | 2632254..2632673 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| C9E39_RS13435 () | 2632753..2633007 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| C9E39_RS13440 () | 2633004..2633426 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| C9E39_RS13445 () | 2633504..2634292 | + | 789 | WP_001304174.1 | hypothetical protein | - |
| C9E39_RS13450 () | 2634299..2635045 | + | 747 | WP_000788980.1 | ATP-binding protein | - |
| C9E39_RS13455 () | 2635068..2635829 | + | 762 | WP_000450712.1 | DUF1627 domain-containing protein | - |
| C9E39_RS13460 () | 2635845..2636267 | + | 423 | WP_001141110.1 | DUF977 family protein | - |
| C9E39_RS13465 () | 2636373..2636585 | + | 213 | WP_000935420.1 | hypothetical protein | - |
| C9E39_RS13470 () | 2636618..2636835 | + | 218 | Protein_2585 | DUF4014 family protein | - |
| C9E39_RS13475 () | 2636837..2637100 | + | 264 | WP_000224233.1 | hypothetical protein | - |
| C9E39_RS13480 () | 2637111..2637272 | + | 162 | WP_000208018.1 | hypothetical protein | - |
| C9E39_RS13485 () | 2637351..2637596 | + | 246 | WP_000365100.1 | hypothetical protein | - |
| C9E39_RS13490 () | 2638028..2639179 | + | 1152 | WP_001100703.1 | DNA cytosine methyltransferase | - |
| C9E39_RS13495 () | 2639147..2640136 | - | 990 | WP_000016656.1 | hypothetical protein | - |
| C9E39_RS13500 () | 2640136..2641527 | - | 1392 | WP_000138556.1 | ATP-binding protein | - |
| C9E39_RS13505 () | 2642027..2642626 | + | 600 | WP_000940319.1 | DUF1367 family protein | - |
| C9E39_RS13510 () | 2642626..2642916 | + | 291 | WP_000247761.1 | DUF1364 domain-containing protein | - |
| C9E39_RS13515 () | 2642913..2643467 | + | 555 | WP_000640158.1 | DUF1133 family protein | - |
| C9E39_RS13530 () | 2644029..2644460 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E39_RS13535 () | 2644457..2644712 | + | 256 | Protein_2596 | DUF3927 family protein | - |
| C9E39_RS13540 () | 2644938..2646788 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E39_RS13545 () | 2647227..2647442 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E39_RS13550 () | 2647447..2647791 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E39_RS13555 () | 2647842..2648375 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E39_RS13560 () | 2648646..2649215 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E39_RS13565 () | 2649215..2649361 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E39_RS13570 () | 2649584..2649769 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E39_RS13575 () | 2650295..2650609 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E39_RS13580 () | 2650691..2650915 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E39_RS13590 () | 2651302..2651847 | + | 546 | WP_000867493.1 | terminase small subunit | - |
| C9E39_RS13595 () | 2651822..2653747 | + | 1926 | WP_001027223.1 | phage terminase large subunit family protein | - |
| C9E39_RS13600 () | 2653744..2653950 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E39_RS13605 () | 2653947..2655548 | + | 1602 | WP_137143812.1 | phage portal protein | - |
| C9E39_RS13610 () | 2655529..2656848 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E39_RS13615 () | 2656858..2657190 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E39_RS13620 () | 2657246..2658271 | + | 1026 | WP_000063265.1 | major capsid protein | - |
| C9E39_RS13625 () | 2658313..2658711 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E39_RS13630 () | 2658723..2659076 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E39_RS13635 () | 2659091..2659624 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E39_RS13640 () | 2659621..2660016 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E39_RS13645 () | 2660024..2660776 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E39_RS13650 () | 2660790..2661212 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E39_RS13655 () | 2661239..2661652 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E39_RS13660 () | 2661633..2664245 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E39_RS13665 () | 2664242..2664571 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E39_RS13670 () | 2664571..2665269 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E39_RS13675 () | 2665280..2666023 | + | 744 | WP_000194798.1 | C40 family peptidase | - |
| C9E39_RS13680 () | 2665969..2666598 | + | 630 | WP_072147834.1 | tail assembly protein | - |
| C9E39_RS13685 () | 2666839..2670318 | + | 3480 | WP_000514945.1 | host specificity protein J | - |
| C9E39_RS13690 () | 2670386..2670985 | + | 600 | WP_001230509.1 | Outer membrane protein X | VF |
| C9E39_RS13695 () | 2671050..2672273 | + | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C9E39_RS13700 () | 2672275..2672544 | + | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E39_RS13705 () | 2672658..2673233 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E39_RS13710 () | 2673306..2673935 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E39_RS13715 () | 2674017..2674658 | + | 642 | WP_001143808.1 | hypothetical protein | VF |
| C9E39_RS13725 () | 2674820..2675062 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E39_RS13730 () | 2675194..2676477 | + | 1284 | Protein_2633 | MHS family MFS transporter YdfJ | - |
| C9E39_RS13735 () | 2676566..2678026 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E39_RS13740 () | 2678062..2678265 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E39_RS13745 () | 2678442..2679128 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E39_RS13750 () | 2679217..2679963 | - | 747 | WP_000636568.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| C9E39_RS13755 () | 2680100..2682145 | + | 2046 | WP_001302117.1 | peptidyl-dipeptidase Dcp | - |
| C9E39_RS13760 () | 2682190..2682708 | - | 519 | WP_001024796.1 | 2-oxo-tetronate isomerase | - |
| C9E39_RS13765 () | 2682984..2683376 | + | 393 | WP_000671724.1 | YdeI family stress tolerance OB fold protein | - |
| C9E39_RS13770 () | 2683631..2684521 | + | 891 | WP_000592852.1 | diguanylate cyclase DgcZ | - |
| C9E39_RS28585 () | 2684636..2684740 | - | 105 | WP_211180496.1 | protein MgtT | - |
| C9E39_RS13775 () | 2684740..2684835 | - | 96 | WP_000901365.1 | protein MgtS | - |
| C9E39_RS13780 () | 2684943..2685914 | - | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| C9E39_RS13785 () | 2686009..2686404 | + | 396 | WP_001271101.1 | rhodanese | - |
| C9E39_RS13790 () | 2686445..2686969 | - | 525 | Protein_2646 | efflux MFS transporter YdeE | - |
| C9E39_RS13795 () | 2687349..2687960 | - | 612 | WP_000356295.1 | helix-turn-helix domain-containing protein | - |
| C9E39_RS13800 () | 2688117..2688383 | + | 267 | WP_001266279.1 | helix-turn-helix domain-containing protein | - |
| C9E39_RS13805 () | 2688394..2690484 | + | 2091 | WP_000270206.1 | IS3 family transposase ISCc3 | Transposase |
| C9E39_RS13810 () | 2690556..2691488 | + | 933 | WP_000129790.1 | AAA family ATPase | - |
| C9E39_RS13815 () | 2691491..2691712 | + | 222 | WP_000257929.1 | hypothetical protein | - |
| C9E39_RS13820 () | 2691725..2691979 | + | 255 | WP_001057199.1 | hypothetical protein | - |
| C9E39_RS13825 () | 2691981..2692262 | + | 282 | WP_000739863.1 | hypothetical protein | - |
| C9E39_RS13830 () | 2692259..2692531 | + | 273 | WP_000049432.1 | hypothetical protein | - |
| C9E39_RS13835 () | 2692536..2692829 | + | 294 | WP_000049304.1 | hypothetical protein | - |
| C9E39_RS13840 () | 2692841..2693371 | + | 531 | WP_001129553.1 | host-nuclease inhibitor Gam family protein | - |
| C9E39_RS13845 () | 2693469..2694011 | + | 543 | WP_000323221.1 | hypothetical protein | - |
| C9E39_RS13850 () | 2694015..2694548 | + | 534 | WP_000564281.1 | hypothetical protein | - |
| C9E39_RS13855 () | 2694548..2695063 | + | 516 | WP_000465562.1 | hypothetical protein | - |
| C9E39_RS13860 () | 2695067..2695618 | + | 552 | WP_000973021.1 | DNA-binding protein | - |
| C9E39_RS13865 () | 2695615..2695800 | + | 186 | WP_137143805.1 | hypothetical protein | - |
| C9E39_RS13870 () | 2695839..2696171 | + | 333 | WP_000021231.1 | hypothetical protein | - |
| C9E39_RS13875 () | 2696164..2696361 | + | 198 | WP_001086882.1 | hypothetical protein | - |
| C9E39_RS13880 () | 2696351..2696647 | + | 297 | WP_000370523.1 | hypothetical protein | - |
| C9E39_RS13885 () | 2696644..2697153 | + | 510 | WP_001214362.1 | gp16 family protein | - |
| C9E39_RS13890 () | 2697223..2697648 | + | 426 | WP_000852377.1 | transcriptional regulator | - |
| C9E39_RS13895 () | 2697720..2698220 | + | 501 | WP_001125304.1 | lysozyme | - |
| C9E39_RS13900 () | 2698255..2698683 | + | 429 | WP_115801859.1 | endopeptidase | - |
| C9E39_RS13905 () | 2698667..2698885 | + | 219 | WP_001122255.1 | hypothetical protein | - |
| C9E39_RS13910 () | 2698896..2699123 | + | 228 | WP_000342749.1 | TraR/DksA family transcriptional regulator | - |
| C9E39_RS13915 () | 2699104..2699412 | + | 309 | WP_000270159.1 | DUF2730 family protein | - |
| C9E39_RS13920 () | 2699409..2699699 | + | 291 | WP_001279079.1 | hypothetical protein | - |
| C9E39_RS13925 () | 2699702..2700283 | + | 582 | WP_000360581.1 | DUF3486 family protein | - |
| C9E39_RS13930 () | 2700283..2701947 | + | 1665 | WP_001057670.1 | hypothetical protein | - |
| C9E39_RS13935 () | 2701947..2703536 | + | 1590 | WP_000532586.1 | DUF935 domain-containing protein | - |
| C9E39_RS13940 () | 2703520..2704851 | + | 1332 | WP_000046899.1 | phage head morphogenesis protein | - |
| C9E39_RS13945 () | 2704973..2705446 | + | 474 | WP_000094812.1 | phage virion morphogenesis protein | - |
| C9E39_RS13950 () | 2705623..2706747 | + | 1125 | WP_000850813.1 | protease | - |
| C9E39_RS13955 () | 2706747..2707694 | + | 948 | WP_001142979.1 | Mu-like prophage major head subunit gpT family protein | - |
| C9E39_RS13960 () | 2707738..2708091 | + | 354 | WP_001002040.1 | hypothetical protein | - |
| C9E39_RS13965 () | 2708088..2708507 | + | 420 | WP_001104956.1 | gp436 family protein | - |
| C9E39_RS13970 () | 2708504..2709064 | + | 561 | WP_000627431.1 | DUF1834 family protein | - |
| C9E39_RS13975 () | 2709065..2709310 | + | 246 | WP_000848437.1 | DUF2635 domain-containing protein | - |
| C9E39_RS13980 () | 2709307..2710809 | + | 1503 | WP_000606747.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C9E39_RS13985 () | 2710818..2711183 | + | 366 | WP_000015474.1 | phage tail tube protein | - |
| C9E39_RS13990 () | 2711198..2711674 | + | 477 | WP_000213225.1 | phage tail assembly protein | - |
| C9E39_RS14000 () | 2711801..2713876 | + | 2076 | WP_000113523.1 | tape measure protein | - |
| C9E39_RS14005 () | 2713863..2715212 | + | 1350 | WP_000146118.1 | DNA circularization protein | - |
| C9E39_RS14010 () | 2715196..2716320 | + | 1125 | WP_000098808.1 | hypothetical protein | - |
| C9E39_RS14015 () | 2716310..2716924 | + | 615 | WP_000980532.1 | phage baseplate assembly protein V | - |
| C9E39_RS14020 () | 2716917..2717354 | + | 438 | WP_000763330.1 | phage GP46 family protein | - |
| C9E39_RS14025 () | 2717354..2718436 | + | 1083 | WP_001146835.1 | baseplate J/gp47 family protein | - |
| C9E39_RS14030 () | 2718427..2718987 | + | 561 | WP_000301578.1 | YmfQ family protein | - |
| C9E39_RS14035 () | 2718987..2719898 | + | 912 | WP_000469163.1 | hypothetical protein | - |
| C9E39_RS14040 () | 2719933..2720454 | - | 522 | WP_000420351.1 | tail fiber assembly protein | - |
| C9E39_RS14045 () | 2720534..2720737 | - | 204 | WP_010917875.1 | tail fiber protein | - |
| C9E39_RS14055 () | 2720960..2721520 | + | 561 | WP_000904930.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| C9E39_RS14060 () | 2721650..2723668 | + | 2019 | WP_044078958.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| C9E39_RS14065 () | 2723726..2723905 | + | 180 | WP_000221106.1 | DUF1378 family protein | - |
| C9E39_RS14070 () | 2723941..2724186 | + | 246 | WP_001114107.1 | DUF826 domain-containing protein | - |
| C9E39_RS14075 () | 2724225..2724687 | - | 463 | Protein_2701 | hypothetical protein | - |
| C9E39_RS14080 () | 2724802..2725002 | + | 201 | WP_001443803.1 | Com family DNA-binding transcriptional regulator | - |
| C9E39_RS14085 () | 2724956..2725693 | + | 738 | WP_000528256.1 | hypothetical protein | - |
| C9E39_RS14090 () | 2725822..2726487 | - | 666 | Protein_2704 | MFS transporter | - |
| C9E39_RS14095 () | 2726682..2727581 | + | 900 | WP_000087233.1 | O-acetylserine/cysteine exporter | - |
| C9E39_RS14100 () | 2727612..2727830 | - | 219 | WP_000803524.1 | multiple antibiotic resistance protein MarB | - |
| C9E39_RS14105 () | 2727862..2728245 | - | 384 | WP_000091199.1 | Multiple antibiotic resistance protein MarA | VF |
| C9E39_RS14110 () | 2728265..2728699 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
| C9E39_RS14115 () | 2728911..2729576 | + | 666 | WP_000885016.1 | NAAT family transporter MarC | - |
| C9E39_RS14120 () | 2729601..2730791 | - | 1191 | WP_000210801.1 | L-arabinose MFS transporter | - |
| C9E39_RS14125 () | 2730942..2732057 | - | 1116 | Protein_2711 | putative protein YneK | - |
| C9E39_RS14130 () | 2732135..2733016 | - | 882 | WP_000366470.1 | LysR family transcriptional regulator | - |
| C9E39_RS14135 () | 2733117..2734505 | + | 1389 | WP_000156618.1 | succinate-semialdehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|