MGE detailed information
MGE type: Prophage MGE length: 46956 bp
Accession: NZ_CP028652 Location: 3050611..3097566 Organism: Escherichia coli strain 123 Replicon: chromosome
Accession: NZ_CP028652 Location: 3050611..3097566 Organism: Escherichia coli strain 123 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E52_RS15995 () | 3045690..3046037 | + | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C9E52_RS16000 () | 3046087..3047625 | + | 1539 | WP_000998048.1 | IS66-like element ISEc8 family transposase | - |
| C9E52_RS16005 () | 3047910..3048544 | + | 635 | Protein_3046 | transposase | - |
| C9E52_RS16010 () | 3048591..3049160 | - | 570 | WP_000938103.1 | T3SS effector caspase inhibitor NleF | - |
| C9E52_RS16015 () | 3049226..3050137 | - | 912 | WP_000950979.1 | type III secretion system effector kinase NleH1-2 | - |
| C9E52_RS16020 () | 3050244..3050366 | - | 123 | WP_106409364.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E52_RS16025 () | 3050389..3051303 | + | 915 | Protein_3050 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E52_RS16035 () | 3051964..3053289 | + | 1326 | WP_001025672.1 | hypothetical protein | VF |
| C9E52_RS16040 () | 3053629..3054203 | - | 575 | Protein_3052 | hypothetical protein | VF |
| C9E52_RS16045 () | 3054316..3054585 | - | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E52_RS16050 () | 3054587..3055900 | - | 1314 | WP_000216532.1 | ISNCY family transposase KIS | Transposase |
| C9E52_RS16055 () | 3056052..3056651 | - | 600 | WP_001228304.1 | hypothetical protein | VF |
| C9E52_RS16060 () | 3056719..3060195 | - | 3477 | WP_000514792.1 | host specificity protein J | - |
| C9E52_RS16065 () | 3060383..3060820 | - | 438 | WP_001152128.1 | phage minor tail protein L | - |
| C9E52_RS16070 () | 3060820..3061161 | - | 342 | WP_000807954.1 | phage tail protein | - |
| C9E52_RS16075 () | 3061154..3064234 | - | 3081 | WP_062946116.1 | phage tail tape measure protein | - |
| C9E52_RS16080 () | 3064287..3064496 | - | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E52_RS16085 () | 3064592..3064966 | - | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E52_RS16090 () | 3064972..3065688 | - | 717 | WP_001275500.1 | tail protein | - |
| C9E52_RS16095 () | 3065747..3066091 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E52_RS16100 () | 3066088..3066534 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| C9E52_RS16105 () | 3066531..3066881 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E52_RS16110 () | 3066891..3067217 | - | 327 | WP_000126003.1 | head-tail connector protein | - |
| C9E52_RS16115 () | 3067220..3069799 | - | 2580 | WP_137065160.1 | phage portal protein | - |
| C9E52_RS16120 () | 3069745..3069966 | - | 222 | WP_001063094.1 | hypothetical protein | - |
| C9E52_RS16125 () | 3070011..3071948 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| C9E52_RS16130 () | 3072012..3073673 | - | 1662 | WP_001301491.1 | terminase large subunit | - |
| C9E52_RS16135 () | 3073670..3074233 | - | 564 | WP_000958416.1 | terminase small subunit | - |
| C9E52_RS16145 () | 3074523..3074888 | - | 366 | WP_000279786.1 | HNH endonuclease | - |
| C9E52_RS16150 () | 3074930..3075157 | + | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E52_RS16155 () | 3075582..3075767 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E52_RS16165 () | 3075995..3076141 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E52_RS16170 () | 3076141..3076710 | - | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E52_RS16175 () | 3076981..3077514 | - | 534 | WP_000992137.1 | lysozyme | - |
| C9E52_RS16180 () | 3077565..3077909 | - | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E52_RS16185 () | 3077914..3078129 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E52_RS16190 () | 3078569..3080419 | - | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| C9E52_RS16195 () | 3080646..3080901 | - | 256 | Protein_3081 | DUF3927 family protein | - |
| C9E52_RS16200 () | 3080898..3081326 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E52_RS16225 () | 3081965..3082654 | - | 690 | WP_001059381.1 | antiterminator | - |
| C9E52_RS16230 () | 3082651..3083010 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E52_RS16235 () | 3083023..3084072 | - | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E52_RS16240 () | 3084074..3084352 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E52_RS16245 () | 3084520..3084675 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E52_RS16250 () | 3084921..3085025 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E52_RS16255 () | 3085141..3085725 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E52_RS16260 () | 3085782..3086177 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E52_RS16265 () | 3086193..3086962 | - | 770 | Protein_3091 | DUF1627 domain-containing protein | - |
| C9E52_RS16270 () | 3086988..3087728 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| C9E52_RS16275 () | 3087735..3088697 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| C9E52_RS16280 () | 3088720..3089145 | - | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E52_RS16285 () | 3089142..3089444 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E52_RS16290 () | 3089542..3089913 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E52_RS16295 () | 3089934..3090125 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E52_RS16300 () | 3090127..3090405 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E52_RS16305 () | 3090758..3091057 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E52_RS16310 () | 3091129..3091347 | + | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E52_RS16320 () | 3091916..3092104 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E52_RS16325 () | 3092101..3092292 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E52_RS16330 () | 3092385..3094856 | + | 2472 | WP_000048458.1 | exonuclease | - |
| C9E52_RS16335 () | 3094929..3095180 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E52_RS16340 () | 3095215..3095402 | + | 188 | Protein_3105 | DUF3596 domain-containing protein | - |
| C9E52_RS16350 () | 3096169..3096495 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E52_RS16355 () | 3096630..3096971 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E52_RS16360 () | 3097006..3097566 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E52_RS16365 () | 3097569..3098279 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E52_RS16370 () | 3098387..3098692 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E52_RS16375 () | 3098891..3101317 | + | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | Prophage | TA20321 | NC_002655 | 2282958..2329636 | 0.007 |