MGE detailed information
MGE type: Prophage MGE length: 72122 bp
Accession: NZ_CP028589 Location: 2407513..2479634 Organism: Escherichia coli strain WCHEC4533 Replicon: chromosome
Accession: NZ_CP028589 Location: 2407513..2479634 Organism: Escherichia coli strain WCHEC4533 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBR03_RS13685 () | 2403412..2404632 | + | 1221 | WP_021523109.1 | DNA-binding transcriptional repressor Mlc | - |
| DBR03_RS13690 () | 2404757..2405452 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| DBR03_RS13695 () | 2405405..2406697 | - | 1293 | WP_071593650.1 | voltage-gated ClC-type chloride channel ClcB | - |
| DBR03_RS13700 () | 2406856..2407470 | - | 615 | WP_001520571.1 | Tat proofreading chaperone DmsD | - |
| DBR03_RS13705 () | 2407513..2408367 | - | 855 | WP_020233477.1 | dimethyl sulfoxide reductase anchor subunit | - |
| DBR03_RS13710 () | 2408369..2408986 | - | 618 | WP_001520568.1 | dimethylsulfoxide reductase subunit B | - |
| DBR03_RS13715 () | 2408997..2411420 | - | 2424 | WP_072170800.1 | dimethyl sulfoxide reductase subunit A | - |
| DBR03_RS13720 () | 2411481..2413907 | - | 2427 | WP_001551145.1 | dimethyl sulfoxide reductase subunit A | - |
| DBR03_RS13725 () | 2414106..2414411 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| DBR03_RS13730 () | 2414519..2415229 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| DBR03_RS13735 () | 2415232..2415792 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| DBR03_RS13740 () | 2415827..2416168 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| DBR03_RS13745 () | 2416303..2416629 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| DBR03_RS13750 () | 2416835..2418049 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| DBR03_RS13755 () | 2418061..2419080 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| DBR03_RS13760 () | 2419138..2419266 | + | 129 | WP_001389342.1 | hypothetical protein | - |
| DBR03_RS13765 () | 2419268..2420548 | - | 1281 | WP_021523105.1 | Putative defective protein IntQ ; Integrase | Integrase |
| DBR03_RS13770 () | 2420604..2422175 | - | 1572 | WP_087565618.1 | IS66 family transposase ISCro1 | Transposase |
| DBR03_RS13775 () | 2422195..2422542 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| DBR03_RS13780 () | 2422542..2423219 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| DBR03_RS13790 () | 2423290..2423541 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| DBR03_RS13795 () | 2423614..2426085 | - | 2472 | WP_000048363.1 | exonuclease | - |
| DBR03_RS13800 () | 2426179..2426370 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| DBR03_RS13805 () | 2426367..2426555 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| DBR03_RS13810 () | 2427042..2427617 | - | 576 | WP_148240173.1 | hypothetical protein | - |
| DBR03_RS13815 () | 2427619..2427774 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| DBR03_RS13820 () | 2427943..2428350 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| DBR03_RS13825 () | 2428431..2428658 | + | 228 | WP_000921596.1 | transcriptional regulator | - |
| DBR03_RS13830 () | 2428642..2429163 | + | 522 | WP_000705355.1 | hypothetical protein | - |
| DBR03_RS13835 () | 2429144..2430109 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| DBR03_RS13840 () | 2430150..2430548 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| DBR03_RS13845 () | 2430751..2431416 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| DBR03_RS13850 () | 2431625..2432239 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| DBR03_RS13855 () | 2432242..2433264 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| DBR03_RS13860 () | 2433748..2435061 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| DBR03_RS13865 () | 2435498..2435830 | - | 333 | WP_001301033.1 | protein FlxA | - |
| DBR03_RS13870 () | 2436033..2436338 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| DBR03_RS13875 () | 2436363..2436602 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| DBR03_RS13880 () | 2436602..2436889 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| DBR03_RS13885 () | 2436961..2437116 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| DBR03_RS13890 () | 2437333..2437584 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| DBR03_RS13895 () | 2437651..2437929 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| DBR03_RS13900 () | 2437931..2438980 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| DBR03_RS13905 () | 2438994..2439746 | + | 753 | WP_001047135.1 | antitermination protein | - |
| DBR03_RS13910 () | 2440024..2440113 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| DBR03_RS13915 () | 2440168..2440380 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| DBR03_RS13920 () | 2440681..2440896 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| DBR03_RS13925 () | 2441347..2441805 | + | 459 | WP_000526135.1 | IS200-IS605 family transposase IS200C | Transposase |
| DBR03_RS13935 () | 2442362..2442577 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| DBR03_RS13940 () | 2442582..2442893 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| DBR03_RS13945 () | 2442890..2443423 | + | 534 | WP_001092971.1 | lysozyme | - |
| DBR03_RS13950 () | 2443420..2443917 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| DBR03_RS13955 () | 2444280..2444492 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| DBR03_RS13960 () | 2444503..2444691 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| DBR03_RS13965 () | 2444694..2444759 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| DBR03_RS13970 () | 2444839..2444994 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| DBR03_RS13975 () | 2445166..2445339 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| DBR03_RS13980 () | 2445491..2445901 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| DBR03_RS13985 () | 2445959..2446192 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| DBR03_RS13990 () | 2446581..2447126 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| DBR03_RS13995 () | 2447101..2449026 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| DBR03_RS14000 () | 2449023..2449229 | + | 207 | WP_000198149.1 | gpW family protein | - |
| DBR03_RS14005 () | 2449226..2450827 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| DBR03_RS14010 () | 2450808..2452127 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| DBR03_RS14015 () | 2452137..2452469 | + | 333 | WP_001708751.1 | head decoration protein | - |
| DBR03_RS14020 () | 2452524..2453549 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| DBR03_RS14025 () | 2453591..2453989 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| DBR03_RS14030 () | 2454001..2454354 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| DBR03_RS14035 () | 2454366..2454944 | + | 579 | WP_000975070.1 | phage tail protein | - |
| DBR03_RS14040 () | 2454941..2455336 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| DBR03_RS14045 () | 2455344..2456084 | + | 741 | WP_001349920.1 | phage tail protein | - |
| DBR03_RS14050 () | 2456100..2456522 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| DBR03_RS14055 () | 2456504..2456938 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| DBR03_RS14060 () | 2456931..2459492 | + | 2562 | WP_048219008.1 | phage tail tape measure protein | - |
| DBR03_RS14065 () | 2459489..2459818 | + | 330 | WP_000847345.1 | phage tail protein | - |
| DBR03_RS14070 () | 2459818..2460516 | + | 699 | WP_029702161.1 | phage minor tail protein L | - |
| DBR03_RS14075 () | 2460522..2461265 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| DBR03_RS14080 () | 2461202..2461804 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| DBR03_RS14085 () | 2461865..2465344 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| DBR03_RS14090 () | 2465412..2466011 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| DBR03_RS14095 () | 2466076..2468475 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DBR03_RS14100 () | 2468472..2468753 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| DBR03_RS27025 () | 2469237..2469467 | + | 231 | WP_089634424.1 | phage tail protein | - |
| DBR03_RS14110 () | 2469478..2469771 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| DBR03_RS14115 () | 2469791..2469901 | + | 111 | Protein_2346 | tail fiber assembly protein | - |
| DBR03_RS14120 () | 2469999..2470589 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DBR03_RS14125 () | 2470906..2471139 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| DBR03_RS14130 () | 2471208..2471321 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DBR03_RS14135 () | 2471925..2473208 | + | 1284 | Protein_2350 | MHS family MFS transporter YdfJ | - |
| DBR03_RS14140 () | 2473297..2474757 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| DBR03_RS14145 () | 2474793..2474996 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| DBR03_RS14150 () | 2475174..2475860 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| DBR03_RS14155 () | 2475949..2476695 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| DBR03_RS14160 () | 2476832..2478877 | + | 2046 | WP_001523328.1 | peptidyl-dipeptidase Dcp | - |
| DBR03_RS14165 () | 2479242..2479634 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| DBR03_RS14170 () | 2479889..2480779 | + | 891 | WP_001523326.1 | diguanylate cyclase DgcZ | - |
| DBR03_RS14175 () | 2480998..2481093 | - | 96 | WP_000901367.1 | protein MgtS | - |
| DBR03_RS14180 () | 2481220..2482407 | - | 1188 | WP_001523325.1 | efflux MFS transporter YdeE | - |
| DBR03_RS14185 () | 2482602..2483501 | + | 900 | WP_000087220.1 | O-acetylserine/cysteine exporter | - |
| DBR03_RS14190 () | 2483546..2484244 | - | 699 | WP_020233615.1 | GntR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|