MGE detailed information
MGE type: Conjugative plasmid MGE length: 107796 bp
Accession: NZ_CP027458 Location: 1..107796 Organism: Escherichia coli strain 88-3493 Replicon: plasmid unnamed
Accession: NZ_CP027458 Location: 1..107796 Organism: Escherichia coli strain 88-3493 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6W79_RS26460 () | 1074..1421 | - | 348 | WP_000836684.1 | hypothetical protein | - |
| C6W79_RS25505 () | 1747..2220 | - | 474 | Protein_2 | hypothetical protein | - |
| C6W79_RS25510 () | 2231..2626 | - | 396 | WP_000549593.1 | hypothetical protein | - |
| C6W79_RS25515 () | 2619..2840 | - | 222 | WP_001278977.1 | conjugal transfer protein TraR | - |
| C6W79_RS25520 () | 2975..3490 | - | 516 | WP_024213657.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C6W79_RS25525 () | 3487..3738 | - | 252 | WP_001038336.1 | conjugal transfer protein TrbG | - |
| C6W79_RS25530 () | 3731..4051 | - | 321 | WP_024214338.1 | conjugal transfer protein TrbD | - |
| C6W79_RS25535 () | 4038..4625 | - | 588 | WP_000002895.1 | conjugal transfer protein TraP | - |
| C6W79_RS25540 () | 4615..6045 | - | 1431 | WP_000146622.1 | conjugal transfer protein TraB | - |
| C6W79_RS25545 () | 6045..6773 | - | 729 | WP_001365587.1 | type-F conjugative transfer system secretin TraK | - |
| C6W79_RS25550 () | 6760..7326 | - | 567 | WP_000399759.1 | type IV conjugative transfer system protein TraE | - |
| C6W79_RS25555 () | 7348..7659 | - | 312 | WP_000012108.1 | type IV conjugative transfer system protein TraL | - |
| C6W79_RS25560 () | 7674..8027 | - | 354 | WP_001098216.1 | type IV conjugative transfer system pilin TraA | - |
| C6W79_RS25565 () | 8062..8289 | - | 228 | WP_000589554.1 | conjugal transfer relaxosome protein TraY | - |
| C6W79_RS25570 () | 8408..9055 | - | 648 | WP_052892413.1 | transcriptional regulator TraJ family protein | - |
| C6W79_RS25575 () | 9249..9632 | - | 384 | WP_001585112.1 | relaxosome protein TraM | - |
| C6W79_RS25580 () | 9953..10555 | + | 603 | WP_106888575.1 | hypothetical protein | VF |
| C6W79_RS25585 () | 10851..11672 | - | 822 | WP_024213651.1 | DUF945 domain-containing protein | - |
| C6W79_RS25590 () | 11791..12078 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| C6W79_RS25600 () | 12234..12536 | - | 303 | WP_024213649.1 | hypothetical protein | - |
| C6W79_RS26620 () | 12839..13136 | + | 298 | Protein_21 | hypothetical protein | - |
| C6W79_RS25620 () | 13437..13598 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 13663..13857 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13663..13857 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13663..13857 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13663..13857 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| C6W79_RS25625 () | 13806..14120 | - | 315 | Protein_23 | theronine dehydrogenase | - |
| C6W79_RS25630 () | 14117..14836 | - | 720 | WP_001276237.1 | plasmid SOS inhibition protein A | - |
| C6W79_RS25635 () | 14833..15267 | - | 435 | WP_024213646.1 | conjugation system SOS inhibitor PsiB | - |
| C6W79_RS25640 () | 15322..17280 | - | 1959 | WP_052892458.1 | ParB/RepB/Spo0J family partition protein | - |
| C6W79_RS25645 () | 17346..17579 | - | 234 | WP_021564200.1 | DUF905 family protein | - |
| C6W79_RS25650 () | 17637..18170 | - | 534 | WP_024213643.1 | single-stranded DNA-binding protein | - |
| C6W79_RS25670 () | 18653..19003 | + | 351 | WP_077789012.1 | pilus protein | - |
| C6W79_RS25675 () | 18984..19547 | - | 564 | WP_001385677.1 | class I SAM-dependent methyltransferase | - |
| C6W79_RS25680 () | 19593..20954 | - | 1362 | WP_024213835.1 | DUF3560 domain-containing protein | - |
| C6W79_RS25685 () | 21006..21236 | - | 231 | WP_000218649.1 | hypothetical protein | - |
| C6W79_RS25700 () | 21914..22219 | + | 306 | WP_052892427.1 | hypothetical protein | - |
| C6W79_RS25705 () | 22198..22389 | - | 192 | WP_001027514.1 | hypothetical protein | - |
| C6W79_RS25710 () | 22389..22808 | - | 420 | WP_000271736.1 | DUF1380 family protein | - |
| C6W79_RS25715 () | 22855..23157 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| C6W79_RS26480 () | 23696..24466 | - | 771 | WP_024213723.1 | hypothetical protein | - |
| C6W79_RS25730 () | 24511..24945 | - | 435 | WP_106888576.1 | DUF1380 family protein | - |
| C6W79_RS25735 () | 24959..25180 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| C6W79_RS25740 () | 25181..25864 | - | 684 | WP_106888577.1 | DNA methylase | - |
| C6W79_RS25745 () | 25941..26253 | - | 313 | Protein_41 | hypothetical protein | - |
| C6W79_RS25750 () | 26250..27152 | - | 903 | WP_077629773.1 | DUF1281 domain-containing protein | - |
| C6W79_RS25760 () | 27569..27817 | + | 249 | WP_000618108.1 | DinI-like family protein | - |
| C6W79_RS25765 () | 27814..28251 | + | 438 | WP_000109074.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C6W79_RS25770 () | 28251..29521 | + | 1271 | Protein_45 | translesion error-prone DNA polymerase V subunit UmuC | - |
| C6W79_RS25780 () | 29526..29918 | - | 393 | WP_000340836.1 | plasmid partitioning/stability family protein | - |
| C6W79_RS25785 () | 29923..30894 | - | 972 | WP_001103695.1 | hypothetical protein | - |
| C6W79_RS25790 () | 31123..31767 | + | 645 | WP_000633912.1 | AAA family ATPase | - |
| C6W79_RS25795 () | 31761..32036 | + | 276 | WP_000239527.1 | hypothetical protein | - |
| C6W79_RS25800 () | 32174..32983 | - | 810 | WP_000016958.1 | site-specific integrase | - |
| C6W79_RS25805 () | 32984..33289 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C6W79_RS25810 () | 33291..33509 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C6W79_RS25815 () | 34105..34365 | + | 261 | WP_000343084.1 | hypothetical protein | - |
| C6W79_RS25820 () | 34362..34952 | + | 591 | WP_106888579.1 | hypothetical protein | - |
| C6W79_RS25825 () | 34970..35317 | - | 348 | WP_000142428.1 | hypothetical protein | - |
| C6W79_RS25835 () | 35502..35780 | + | 279 | WP_001365566.1 | hypothetical protein | - |
| C6W79_RS25840 () | 35787..36122 | - | 336 | Protein_57 | colicin | - |
| C6W79_RS25845 () | 36217..36948 | - | 732 | WP_000850413.1 | complement resistance protein TraT | - |
| C6W79_RS26625 () | 37225..37335 | - | 111 | Protein_59 | IS481 family transposase | - |
| C6W79_RS25865 () | 38119..39096 | + | 978 | WP_001369978.1 | RepB family plasmid replication initiator protein | - |
| C6W79_RS25870 () | 39335..39617 | - | 283 | Protein_61 | ISL3 family transposase ISEc53 | Transposase |
| C6W79_RS25875 () | 39774..40003 | - | 230 | Protein_62 | serine/threonine protein kinase | - |
| C6W79_RS25885 () | 40132..40626 | - | 495 | WP_106888580.1 | Transcriptional repressor MprA | VF |
| C6W79_RS25890 () | 40747..42186 | - | 1440 | WP_106888581.1 | Hemolysin secretion protein D, chromosomal | VF |
| C6W79_RS25895 () | 42190..44310 | - | 2121 | WP_072158971.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| C6W79_RS25900 () | 44360..47356 | - | 2997 | WP_000217747.1 | Hemolysin, chromosomal | VF |
| C6W79_RS25905 () | 47358..47873 | - | 516 | WP_000839943.1 | RTX-I toxin-activating lysine-acyltransferase ApxIC | VF |
| C6W79_RS25910 () | 48300..49103 | - | 804 | WP_000899427.1 | Outer membrane protein A | VF |
| C6W79_RS25915 () | 49128..53405 | - | 4278 | WP_159026629.1 | Autotransporter adhesin SadA | VF |
| C6W79_RS25920 () | 53457..53738 | - | 282 | WP_106888583.1 | Major pilu subunit operon regulatory protein PapB | VF |
| C6W79_RS25925 () | 54841..56397 | + | 1557 | WP_000554412.1 | L-lactate permease | - |
| C6W79_RS25930 () | 56448..57167 | + | 720 | WP_106888584.1 | (Fe-S)-binding protein | - |
| C6W79_RS25935 () | 57178..58593 | + | 1416 | WP_032256684.1 | iron-sulfur cluster-binding protein | - |
| C6W79_RS25940 () | 58598..59296 | + | 699 | WP_106888585.1 | lactate utilization protein C | - |
| C6W79_RS25950 () | 59654..60118 | - | 465 | WP_077882621.1 | IS3 family transposase ISKpn8 | Transposase |
| C6W79_RS25955 () | 60237..60548 | - | 312 | WP_044804120.1 | hypothetical protein | - |
| C6W79_RS25960 () | 60576..60767 | - | 192 | WP_000264906.1 | hypothetical protein | - |
| C6W79_RS25965 () | 60777..61142 | - | 366 | WP_000997726.1 | hypothetical protein | - |
| C6W79_RS25975 () | 61276..61485 | + | 210 | WP_106888586.1 | hypothetical protein | - |
| C6W79_RS25980 () | 61648..65739 | - | 4092 | WP_106888587.1 | Serine protease SepA autotransporter | VF |
| C6W79_RS25985 () | 66586..67782 | + | 1197 | WP_106888588.1 | IS110 family transposase ISEc20 | Transposase |
| C6W79_RS25990 () | 67855..68795 | - | 941 | Protein_82 | IS3 family transposase IS3 | Transposase |
| C6W79_RS26630 () | 68862..68951 | - | 90 | Protein_83 | transposase | - |
| C6W79_RS25995 () | 69205..70698 | + | 1494 | WP_159026628.1 | Adhesin YadA | VF |
| C6W79_RS26000 () | 70950..71239 | + | 290 | Protein_85 | IS3 family transposase | - |
| C6W79_RS26005 () | 71443..71622 | + | 180 | Protein_86 | integrase core domain-containing protein | - |
| C6W79_RS26015 () | 71930..74017 | + | 2088 | WP_106888589.1 | bifunctional siderophore receptor/adhesin Iha | - |
| C6W79_RS26020 () | 74278..74700 | - | 423 | WP_028985400.1 | Exc2 family lipoprotein | - |
| C6W79_RS26025 () | 74983..75498 | + | 516 | Protein_89 | IS91 family transposase IS91 | Transposase |
| C6W79_RS26030 () | 75829..76068 | - | 240 | WP_000859018.1 | MarR family transcriptional regulator | - |
| C6W79_RS26045 () | 77044..77901 | - | 858 | WP_000130991.1 | incFII family plasmid replication initiator RepA | - |
| C6W79_RS26050 () | 77894..77968 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C6W79_RS26060 () | 78203..78460 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| C6W79_RS26065 () | 78744..78893 | - | 150 | WP_001336447.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 78941..78997 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 78941..78997 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 78941..78997 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 78941..78997 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| C6W79_RS26080 () | 79657..80118 | - | 462 | WP_000760084.1 | thermonuclease family protein | - |
| C6W79_RS26090 () | 81214..81771 | - | 558 | WP_024213676.1 | fertility inhibition protein FinO | - |
| C6W79_RS26095 () | 81807..82175 | - | 369 | WP_000722534.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| C6W79_RS26100 () | 82258..83004 | - | 747 | WP_024213675.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| C6W79_RS26105 () | 83024..88294 | - | 5271 | WP_106888590.1 | Multifunctional conjugation protein TraI | Relaxase |
| C6W79_RS26110 () | 88294..90492 | - | 2199 | WP_106888591.1 | type IV conjugative transfer system coupling protein TraD | - |
| C6W79_RS26115 () | 90774..91253 | - | 480 | WP_106888596.1 | hypothetical protein | - |
| C6W79_RS26120 () | 91457..92188 | - | 732 | WP_123129823.1 | complement resistance protein TraT | - |
| C6W79_RS26125 () | 92220..92723 | - | 504 | WP_077637628.1 | surface exclusion protein | - |
| C6W79_RS26130 () | 92739..95561 | - | 2823 | WP_106888592.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C6W79_RS26135 () | 95558..96931 | - | 1374 | WP_024213668.1 | conjugal transfer protein TraH | - |
| C6W79_RS26140 () | 96918..97343 | - | 426 | WP_106888593.1 | F-type conjugal transfer protein TrbF | - |
| C6W79_RS26145 () | 97291..97638 | - | 348 | WP_106888594.1 | P-type conjugative transfer protein TrbJ | - |
| C6W79_RS26150 () | 97568..98113 | - | 546 | WP_001477377.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C6W79_RS26155 () | 98100..98387 | - | 288 | WP_000335419.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C6W79_RS26160 () | 98453..98899 | - | 447 | WP_077637625.1 | hypothetical protein | - |
| C6W79_RS26165 () | 98985..99350 | - | 366 | WP_024213665.1 | hypothetical protein | - |
| C6W79_RS26170 () | 99364..100107 | - | 744 | WP_024213664.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C6W79_RS26175 () | 100100..100357 | - | 258 | WP_024213663.1 | conjugal transfer protein TrbE | - |
| C6W79_RS26180 () | 100371..102200 | - | 1830 | WP_038812163.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C6W79_RS26185 () | 102510..102890 | - | 381 | WP_024213661.1 | hypothetical protein | - |
| C6W79_RS26190 () | 102887..103525 | - | 639 | WP_024213660.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C6W79_RS26195 () | 103754..104087 | - | 334 | Protein_117 | hypothetical protein | - |
| C6W79_RS26200 () | 104114..105106 | - | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| C6W79_RS26205 () | 105103..105735 | - | 633 | WP_000877291.1 | type-F conjugative transfer system protein TraW | - |
| C6W79_RS26210 () | 105732..106118 | - | 387 | WP_000214090.1 | type-F conjugative transfer system protein TrbI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|