MGE detailed information
MGE type: Genomic_island MGE length: 70095 bp
Accession: NZ_CP027340 Location: 1653572..1723666 Organism: Escherichia coli strain 2015C-3121 Replicon: chromosome
Accession: NZ_CP027340 Location: 1653572..1723666 Organism: Escherichia coli strain 2015C-3121 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N25_RS08735 () | 1649979..1650698 | - | 720 | WP_000611298.1 | two-component system response regulator DcuR | - |
| C6N25_RS08740 () | 1650695..1652326 | - | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| C6N25_RS08745 () | 1652507..1652737 | + | 231 | WP_000371698.1 | (4Fe-4S)-binding protein | - |
| C6N25_RS08750 () | 1652749..1653021 | + | 273 | WP_000405647.1 | N-acetyltransferase | - |
| C6N25_RS08755 () | 1653248..1653544 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | - |
| C6N25_RS08760 () | 1653572..1653745 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | - |
| C6N25_RS08765 () | 1653864..1655381 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| C6N25_RS08770 () | 1655618..1657075 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| C6N25_RS08775 () | 1657134..1659281 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| C6N25_RS08780 () | 1659361..1660695 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| C6N25_RS08790 () | 1661061..1662599 | - | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| C6N25_RS08800 () | 1663481..1663807 | - | 327 | WP_000779483.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6N25_RS08805 () | 1663804..1664067 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| C6N25_RS08810 () | 1664139..1665005 | - | 867 | WP_000014511.1 | DUF4942 domain-containing protein | - |
| C6N25_RS08815 () | 1665090..1665287 | - | 198 | WP_000839256.1 | DUF957 domain-containing protein | - |
| C6N25_RS08820 () | 1665299..1665787 | - | 489 | WP_000761662.1 | hypothetical protein | - |
| C6N25_RS08825 () | 1665784..1666161 | - | 378 | WP_000854896.1 | TA system toxin CbtA family protein | Toxin Detail |
| C6N25_RS08830 () | 1666208..1666582 | - | 375 | WP_024175300.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C6N25_RS08835 () | 1666745..1666966 | - | 222 | WP_000692358.1 | DUF987 domain-containing protein | - |
| C6N25_RS08840 () | 1667029..1667505 | - | 477 | WP_001186727.1 | RadC family protein | - |
| C6N25_RS08845 () | 1667521..1668006 | - | 486 | WP_000214386.1 | antirestriction protein | - |
| C6N25_RS08850 () | 1668096..1668914 | - | 819 | WP_001234751.1 | DUF945 domain-containing protein | - |
| C6N25_RS08855 () | 1669005..1669238 | - | 234 | WP_001117568.1 | DUF905 family protein | - |
| C6N25_RS08860 () | 1669309..1672155 | - | 2847 | WP_106888762.1 | Ag43/Cah family autotransporter adhesin | - |
| C6N25_RS08865 () | 1672349..1673577 | + | 1229 | WP_169073214.1 | IS3 family transposase IS2 | Transposase |
| C6N25_RS08870 () | 1673766..1674503 | - | 738 | WP_000634450.1 | AraC family transcriptional regulator | - |
| C6N25_RS08885 () | 1675470..1675782 | - | 313 | Protein_1574 | IS66 family insertion sequence element accessory protein TnpB | - |
| C6N25_RS08890 () | 1675769..1675977 | - | 209 | Protein_1575 | IS66 family insertion sequence element accessory protein TnpB | - |
| C6N25_RS08895 () | 1676653..1677789 | + | 1137 | WP_001228922.1 | Outer membrane porin protein OmpD | VF |
| C6N25_RS08900 () | 1677885..1679582 | + | 1698 | WP_000401034.1 | sulfatase | - |
| C6N25_RS08905 () | 1679651..1679908 | + | 258 | WP_001032733.1 | hypothetical protein | - |
| C6N25_RS29980 () | 1680129..1680344 | + | 216 | WP_001367551.1 | IS110 family transposase ISHar6 | Transposase |
| C6N25_RS30365 () | 1680518..1680775 | + | 258 | WP_001367505.1 | IS110 family transposase ISSde4 | Transposase |
| C6N25_RS08920 () | 1680757..1680948 | + | 192 | WP_071525616.1 | transposase | - |
| C6N25_RS08925 () | 1681090..1682109 | + | 1020 | WP_000878008.1 | IS110 family transposase ISEc66 | Transposase |
| C6N25_RS08935 () | 1682821..1683045 | + | 225 | WP_077633076.1 | integrase core domain-containing protein | - |
| C6N25_RS08940 () | 1683220..1685191 | + | 1972 | Protein_1584 | Hemin receptor | VF |
| C6N25_RS08945 () | 1685210..1686001 | + | 792 | WP_000977392.1 | DUF4198 domain-containing protein | - |
| C6N25_RS08950 () | 1686591..1687220 | + | 630 | WP_000021267.1 | ParB/RepB/Spo0J family partition protein | - |
| C6N25_RS08955 () | 1687402..1689147 | - | 1746 | WP_024165505.1 | NERD domain-containing protein | - |
| C6N25_RS08960 () | 1689376..1690596 | - | 1221 | WP_001124813.1 | DUF3440 domain-containing protein | - |
| C6N25_RS08965 () | 1690722..1691552 | - | 831 | WP_000936711.1 | small-conductance mechanosensitive channel MscS | - |
| C6N25_RS08970 () | 1691714..1691902 | - | 189 | WP_001237806.1 | YqaE/Pmp3 family membrane protein | - |
| C6N25_RS08975 () | 1691921..1692493 | - | 573 | WP_000545469.1 | LuxR family transcriptional regulator | - |
| C6N25_RS08980 () | 1692550..1693026 | - | 477 | WP_001165712.1 | hypothetical protein | - |
| C6N25_RS08985 () | 1693089..1693295 | - | 207 | WP_000935977.1 | hypothetical protein | - |
| C6N25_RS08990 () | 1693423..1694625 | - | 1203 | WP_000700770.1 | Adhesin YadA | VF |
| C6N25_RS08995 () | 1694893..1696245 | - | 1353 | Protein_1595 | Lipase | VF |
| C6N25_RS09000 () | 1696338..1697566 | + | 1229 | WP_169073214.1 | IS3 family transposase IS2 | Transposase |
| C6N25_RS09005 () | 1697582..1698097 | - | 516 | Protein_1597 | hypothetical protein | - |
| C6N25_RS09010 () | 1698156..1699826 | - | 1671 | WP_106888918.1 | hypothetical protein | - |
| C6N25_RS09015 () | 1699944..1700405 | - | 462 | Protein_1599 | hypothetical protein | - |
| C6N25_RS09020 () | 1700691..1701938 | - | 1248 | WP_001368290.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| C6N25_RS09025 () | 1701998..1704145 | - | 2148 | WP_000835435.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| C6N25_RS09030 () | 1704150..1705418 | - | 1269 | WP_033806437.1 | TolC family protein | - |
| C6N25_RS09040 () | 1706914..1707957 | + | 1044 | WP_000912969.1 | subtilase AB5 cytotoxin subunit A | - |
| C6N25_RS09045 () | 1707974..1708396 | + | 423 | WP_024166125.1 | subtilase AB5 cytotoxin subunit B | - |
| C6N25_RS09050 () | 1708711..1709697 | - | 987 | WP_001367443.1 | hypothetical protein | - |
| C6N25_RS09055 () | 1709798..1710532 | + | 735 | WP_001282578.1 | transcriptional regulator NanR | - |
| C6N25_RS09060 () | 1710568..1711503 | - | 936 | WP_024166124.1 | alpha/beta hydrolase | - |
| C6N25_RS09065 () | 1711553..1712662 | - | 1110 | WP_000865294.1 | N-acetylneuraminate epimerase | - |
| C6N25_RS09070 () | 1712675..1713385 | - | 711 | WP_001380660.1 | N-acetylneuraminic acid channel protein | - |
| C6N25_RS09075 () | 1713431..1714261 | - | 831 | WP_000948499.1 | alpha/beta hydrolase | - |
| C6N25_RS09080 () | 1714265..1715737 | - | 1473 | WP_000376548.1 | MFS transporter | - |
| C6N25_RS09085 () | 1715786..1716661 | - | 876 | WP_000629093.1 | N-acetylmannosamine kinase | - |
| C6N25_RS09090 () | 1716694..1717611 | - | 918 | WP_001149831.1 | N-acetylneuraminate lyase | - |
| C6N25_RS09095 () | 1717729..1718380 | + | 652 | Protein_1614 | transposase domain-containing protein | - |
| C6N25_RS09100 () | 1718515..1719201 | - | 687 | WP_000224561.1 | type I restriction-modification system subunit M | - |
| C6N25_RS09105 () | 1719313..1720260 | - | 948 | WP_000005864.1 | DUF1281 domain-containing protein | - |
| C6N25_RS09115 () | 1720535..1722073 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C6N25_RS09120 () | 1722123..1722470 | - | 348 | WP_000612589.1 | IS66 family transposase ISEc8 | Transposase |
| C6N25_RS09125 () | 1722467..1722847 | - | 381 | WP_001171530.1 | IS66 family transposase ISEc8 | Transposase |
| C6N25_RS09130 () | 1722936..1723088 | - | 153 | WP_001368060.1 | peptidase M10 | - |
| C6N25_RS29985 () | 1723424..1723666 | + | 243 | WP_050543646.1 | hypothetical protein | - |
| C6N25_RS30370 () | 1724592..1725020 | - | 429 | WP_172628519.1 | YadA-like family protein | - |
| C6N25_RS30375 () | 1725264..1726268 | - | 1005 | Protein_1623 | hypothetical protein | - |
| C6N25_RS09155 () | 1726500..1727990 | + | 1491 | WP_000009550.1 | UvrD-helicase domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|