MGE detailed information
MGE type: Prophage MGE length: 40859 bp
Accession: NZ_CP026776 Location: 874539..915397 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Accession: NZ_CP026776 Location: 874539..915397 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P84_RS04745 () | 869979..871352 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| C1P84_RS04750 () | 871398..872279 | - | 882 | WP_000984517.1 | protease HtpX | - |
| C1P84_RS04755 () | 872471..874519 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| C1P84_RS04760 () | 874539..875237 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P84_RS04765 () | 875334..875831 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C1P84_RS04770 () | 875961..877244 | + | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| C1P84_RS04775 () | 877213..879833 | + | 2621 | Protein_903 | hypothetical protein | VF |
| C1P84_RS04780 () | 879913..881352 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P84_RS04785 () | 881470..881706 | + | 237 | WP_001295499.1 | YebV family protein | - |
| C1P84_RS04790 () | 881811..882002 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C1P84_RS04795 () | 882027..882215 | - | 189 | Protein_907 | serine/threonine-protein phosphatase | - |
| C1P84_RS04805 () | 883480..883926 | - | 447 | Protein_909 | metallophosphoesterase | - |
| C1P84_RS04815 () | 884677..886383 | + | 1707 | WP_000936830.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P84_RS04825 () | 886563..887186 | - | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| C1P84_RS23280 () | 887137..887304 | - | 168 | Protein_912 | IS66 family transposase ISSfl3 | Transposase |
| C1P84_RS23285 () | 887306..887686 | - | 381 | Protein_913 | IS66 family transposase ISSfl3 | Transposase |
| C1P84_RS04835 () | 888196..888432 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| C1P84_RS04840 () | 888909..889797 | + | 889 | Protein_915 | Rha family transcriptional regulator | - |
| C1P84_RS04845 () | 889839..891067 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| C1P84_RS04850 () | 891144..891365 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| C1P84_RS04855 () | 891365..891535 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| C1P84_RS04860 () | 891610..891885 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| C1P84_RS04865 () | 891985..893400 | + | 1416 | Protein_920 | exodeoxyribonuclease VIII | - |
| C1P84_RS23290 () | 895131..895313 | - | 183 | Protein_922 | IS91 family transposase ISShvi3 | Transposase |
| C1P84_RS04880 () | 895392..896503 | + | 1112 | WP_087933729.1 | IS3 family transposase IS1351 | Transposase |
| C1P84_RS04885 () | 896519..896767 | - | 249 | Protein_924 | integrase | - |
| C1P84_RS04890 () | 896834..898002 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P84_RS04920 () | 898717..899199 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| C1P84_RS04930 () | 900488..900661 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| C1P84_RS04935 () | 900814..901368 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| C1P84_RS04940 () | 901365..901655 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C1P84_RS04945 () | 901655..902254 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| C1P84_RS04950 () | 902388..903085 | + | 698 | WP_227804319.1 | IS1 family transposase IS1X2 | Transposase |
| C1P84_RS04960 () | 903591..903746 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 903758..903816 | + | 59 | - | - | Antitoxin Detail |
| C1P84_RS04965 () | 904201..904566 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| C1P84_RS04970 () | 904566..905231 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| C1P84_RS04975 () | 905228..905593 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| C1P84_RS04980 () | 905595..905813 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| C1P84_RS04985 () | 905906..906262 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P84_RS04990 () | 906320..906742 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| C1P84_RS04995 () | 906757..907500 | - | 744 | WP_000788999.1 | ATP-binding protein | - |
| C1P84_RS23615 () | 907646..907815 | - | 170 | Protein_941 | hypothetical protein | - |
| C1P84_RS05005 () | 908339..909567 | + | 1229 | WP_134797556.1 | IS3 family transposase IS2 | Transposase |
| C1P84_RS05010 () | 909581..909991 | - | 411 | Protein_943 | YdaU family protein | - |
| C1P84_RS05015 () | 910095..911251 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| C1P84_RS05020 () | 911296..911730 | - | 435 | Protein_945 | HTH-type transcriptional regulator PgrR | VF |
| C1P84_RS05025 () | 911868..912788 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| C1P84_RS23300 () | 912788..913722 | + | 935 | Protein_947 | alpha/beta hydrolase | - |
| C1P84_RS05040 () | 913740..914378 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| C1P84_RS05045 () | 914669..915397 | + | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| C1P84_RS05050 () | 915372..916331 | - | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| C1P84_RS05055 () | 916450..916956 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| C1P84_RS05060 () | 917000..918541 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| C1P84_RS05065 () | 918689..919750 | - | 1062 | WP_000138742.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|