MGE detailed information
MGE type: Prophage MGE length: 62691 bp
Accession: NZ_CP026768 Location: 977677..1040367 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Accession: NZ_CP026768 Location: 977677..1040367 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P87_RS05165 () | 974225..975196 | + | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| C1P87_RS05170 () | 975259..976059 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P87_RS05175 () | 976072..976923 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| C1P87_RS05180 () | 976978..977454 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| C1P87_RS05185 () | 977483..978180 | + | 698 | WP_252988568.1 | IS1 family transposase IS1X2 | Transposase |
| C1P87_RS05190 () | 978643..979209 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| C1P87_RS05195 () | 979206..980015 | - | 810 | WP_134798228.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P87_RS05200 () | 980181..980390 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P87_RS05205 () | 980403..980542 | - | 140 | Protein_1000 | YobF family protein | - |
| C1P87_RS05210 () | 981212..981499 | - | 288 | WP_001006860.1 | YebO family protein | - |
| C1P87_RS05215 () | 981574..981717 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P87_RS05220 () | 981876..982115 | + | 240 | WP_001211010.1 | YobH family protein | - |
| C1P87_RS05225 () | 982258..983049 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P87_RS05230 () | 983226..984599 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| C1P87_RS05235 () | 984645..985526 | - | 882 | WP_000984517.1 | protease HtpX | - |
| C1P87_RS05240 () | 985718..987766 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| C1P87_RS05245 () | 987786..988484 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P87_RS05250 () | 988581..989078 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C1P87_RS05255 () | 989208..990491 | + | 1284 | Protein_1010 | membrane integrity lipid transport subunit YebS | - |
| C1P87_RS05260 () | 990460..993080 | + | 2621 | Protein_1011 | hypothetical protein | VF |
| C1P87_RS05265 () | 993160..994599 | + | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P87_RS05270 () | 994717..994953 | + | 237 | WP_001295499.1 | YebV family protein | - |
| C1P87_RS05275 () | 995058..995249 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C1P87_RS05280 () | 995274..995462 | - | 189 | Protein_1015 | serine/threonine-protein phosphatase | - |
| C1P87_RS05290 () | 996727..997173 | - | 447 | Protein_1017 | metallophosphoesterase | - |
| C1P87_RS05300 () | 997915..999630 | + | 1716 | WP_128571583.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P87_RS05310 () | 999810..1000435 | - | 626 | Protein_1019 | DUF4376 domain-containing protein | - |
| C1P87_RS26045 () | 1000386..1000553 | - | 168 | Protein_1020 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS26050 () | 1000555..1000935 | - | 381 | Protein_1021 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS05325 () | 1001136..1001372 | - | 237 | WP_001275006.1 | hypothetical protein | - |
| C1P87_RS05330 () | 1001849..1002737 | + | 889 | Protein_1023 | Rha family transcriptional regulator | - |
| C1P87_RS05335 () | 1002779..1004007 | + | 1229 | WP_171763930.1 | IS3 family transposase IS2 | Transposase |
| C1P87_RS05340 () | 1004084..1004305 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| C1P87_RS05345 () | 1004305..1004475 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| C1P87_RS05350 () | 1004550..1004825 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| C1P87_RS05355 () | 1004925..1006340 | + | 1416 | Protein_1028 | exodeoxyribonuclease VIII | - |
| C1P87_RS05365 () | 1007652..1007960 | + | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| C1P87_RS05370 () | 1007941..1009109 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P87_RS05375 () | 1009170..1010330 | + | 1161 | WP_005107813.1 | AAA family ATPase | - |
| C1P87_RS05380 () | 1010356..1011410 | + | 1055 | Protein_1033 | IS3 family transposase IS629 | Transposase |
| C1P87_RS05385 () | 1011458..1011625 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| C1P87_RS05390 () | 1011627..1011797 | + | 171 | Protein_1035 | DUF3596 domain-containing protein | - |
| C1P87_RS05395 () | 1011814..1012233 | - | 420 | WP_134798230.1 | IS1 family transposase IS1X2 | Transposase |
| C1P87_RS26055 () | 1012153..1012323 | + | 171 | WP_171764398.1 | hypothetical protein | - |
| C1P87_RS05400 () | 1012287..1012928 | + | 642 | Protein_1038 | Putative defective protein IntQ ; Integrase | Integrase |
| C1P87_RS05405 () | 1013390..1014303 | + | 914 | Protein_1039 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| C1P87_RS05410 () | 1014303..1015130 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| C1P87_RS05415 () | 1015127..1015984 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| C1P87_RS05420 () | 1015981..1016838 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| C1P87_RS05425 () | 1017039..1017662 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| C1P87_RS05430 () | 1017613..1018798 | - | 1186 | Protein_1044 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P87_RS05435 () | 1018822..1019366 | - | 545 | Protein_1045 | tail fiber assembly protein | - |
| C1P87_RS26060 () | 1019390..1019758 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| C1P87_RS05450 () | 1019786..1020691 | - | 906 | Protein_1047 | IS3 family transposase IS600 | Transposase |
| C1P87_RS05460 () | 1021463..1021633 | - | 171 | Protein_1049 | Rha family transcriptional regulator | - |
| C1P87_RS05465 () | 1022517..1024121 | - | 1605 | WP_025745148.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| C1P87_RS05495 () | 1024755..1025237 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| C1P87_RS05505 () | 1026526..1026711 | - | 186 | WP_005049799.1 | hypothetical protein | - |
| C1P87_RS05510 () | 1026852..1027406 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| C1P87_RS05515 () | 1027403..1027693 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C1P87_RS05520 () | 1027693..1028292 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| C1P87_RS26065 () | 1028195..1028527 | - | 333 | WP_171764399.1 | hypothetical protein | - |
| C1P87_RS05525 () | 1028426..1029123 | + | 698 | WP_252988570.1 | IS1 family transposase IS1X2 | Transposase |
| C1P87_RS05535 () | 1029629..1029784 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1029796..1029854 | + | 59 | - | - | Antitoxin Detail |
| C1P87_RS05540 () | 1030239..1030604 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| C1P87_RS05545 () | 1030604..1031269 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| C1P87_RS05550 () | 1031266..1031631 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| C1P87_RS05555 () | 1031633..1031851 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| C1P87_RS05560 () | 1031944..1032300 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P87_RS05570 () | 1033625..1034047 | - | 423 | WP_001118167.1 | DUF977 family protein | - |
| C1P87_RS05575 () | 1034062..1034808 | - | 747 | WP_128861108.1 | ATP-binding protein | - |
| C1P87_RS26585 () | 1034954..1035123 | - | 170 | Protein_1068 | hypothetical protein | - |
| C1P87_RS05585 () | 1035647..1036659 | + | 1013 | Protein_1069 | IS3 family transposase IS2 | Transposase |
| C1P87_RS05590 () | 1036686..1037882 | - | 1197 | WP_005107451.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P87_RS05595 () | 1038111..1038692 | + | 582 | Protein_1071 | alpha/beta hydrolase | - |
| C1P87_RS05600 () | 1038710..1039348 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| C1P87_RS05605 () | 1039639..1040367 | + | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| C1P87_RS05610 () | 1040342..1041307 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| C1P87_RS05615 () | 1041426..1041932 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| C1P87_RS05620 () | 1041976..1043517 | - | 1542 | WP_119164775.1 | transcriptional regulator TyrR | - |
| C1P87_RS05625 () | 1043665..1044726 | - | 1062 | WP_000138742.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|