MGE detailed information
MGE type: Prophage MGE length: 63967 bp
Accession: NZ_CP026768 Location: 327064..391030 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Accession: NZ_CP026768 Location: 327064..391030 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P87_RS01480 () | 322818..323888 | - | 1071 | WP_119164723.1 | histidinol-phosphate transaminase | - |
| C1P87_RS01485 () | 323885..325189 | - | 1305 | WP_000009597.1 | histidinol dehydrogenase | - |
| C1P87_RS01490 () | 325195..326094 | - | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
| C1P87_RS01505 () | 326564..326836 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| C1P87_RS26490 () | 326780..326971 | - | 192 | WP_074379805.1 | hypothetical protein | - |
| C1P87_RS01510 () | 326879..327567 | + | 689 | WP_252988579.1 | IS1 family transposase IS1X2 | Transposase |
| C1P87_RS01515 () | 327589..327843 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| C1P87_RS01520 () | 327926..328750 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| C1P87_RS01525 () | 328796..329779 | + | 984 | WP_134798205.1 | LysR substrate-binding domain-containing protein | - |
| C1P87_RS01530 () | 329940..330002 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| C1P87_RS01535 () | 329992..331350 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| C1P87_RS01540 () | 331529..332587 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| C1P87_RS01545 () | 332601..332828 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| C1P87_RS01550 () | 332871..334295 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| C1P87_RS01555 () | 334477..335313 | + | 837 | Protein_308 | Prophage integrase IntA ; Integrase | Integrase |
| C1P87_RS01565 () | 335395..336069 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01570 () | 336066..336236 | + | 171 | Protein_310 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01575 () | 336281..337490 | - | 1210 | Protein_311 | IS3 family transposase IS629 | Transposase |
| C1P87_RS25970 () | 337546..337725 | + | 180 | Protein_312 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P87_RS01585 () | 337722..339323 | + | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01590 () | 339357..339743 | + | 387 | Protein_314 | IS3 family transposase ISLad1 | Transposase |
| C1P87_RS01600 () | 339795..340148 | - | 354 | Protein_315 | hypothetical protein ; Integrase | Integrase |
| C1P87_RS01605 () | 340178..340594 | - | 417 | Protein_316 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01620 () | 341859..342146 | - | 288 | Protein_318 | transposase | - |
| C1P87_RS01630 () | 343476..344381 | - | 906 | Protein_320 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01635 () | 344378..344728 | - | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01640 () | 344725..345399 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01645 () | 345484..345768 | + | 285 | Protein_323 | hypothetical protein | - |
| C1P87_RS01650 () | 345940..346269 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| C1P87_RS01655 () | 346370..346504 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| C1P87_RS01660 () | 346606..346752 | + | 147 | Protein_326 | transposase domain-containing protein | - |
| C1P87_RS01665 () | 347130..348325 | - | 1196 | Protein_327 | IS3 family transposase | - |
| C1P87_RS01675 () | 348568..349724 | + | 1157 | WP_134798207.1 | IS3 family transposase ISSd1 | Transposase |
| C1P87_RS01685 () | 349736..350245 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| C1P87_RS01690 () | 350242..350985 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| C1P87_RS01695 () | 350997..352076 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| C1P87_RS01700 () | 352138..353073 | + | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| C1P87_RS01710 () | 353532..354449 | + | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| C1P87_RS01715 () | 354551..355501 | + | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| C1P87_RS01725 () | 355619..357246 | + | 1628 | Protein_335 | toxic metabolite efflux MATE transporter YeeO | - |
| C1P87_RS01735 () | 357878..358594 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| C1P87_RS01740 () | 358937..360391 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| C1P87_RS01745 () | 360493..360699 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| C1P87_RS01750 () | 360700..361899 | - | 1200 | Protein_339 | IS3 family transposase IS600 | Transposase |
| C1P87_RS01755 () | 361964..362470 | - | 507 | Protein_340 | MFS transporter | - |
| C1P87_RS01760 () | 362526..363694 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P87_RS01765 () | 363801..365063 | - | 1263 | Protein_342 | Prophage integrase IntA ; Integrase | Integrase |
| C1P87_RS01775 () | 365401..366198 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| C1P87_RS01785 () | 366409..367459 | - | 1051 | Protein_344 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C1P87_RS01790 () | 367459..367599 | - | 141 | Protein_345 | DUF4224 domain-containing protein | - |
| C1P87_RS01795 () | 367626..368042 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 368624..368682 | - | 59 | - | - | Antitoxin Detail |
| C1P87_RS01810 () | 368694..368849 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C1P87_RS01820 () | 369017..369295 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| C1P87_RS01825 () | 369297..370355 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| C1P87_RS01830 () | 370356..370721 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P87_RS01835 () | 370718..371406 | + | 689 | Protein_351 | bacteriophage antitermination protein Q | - |
| C1P87_RS01865 () | 372202..372417 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| C1P87_RS01870 () | 372516..372707 | + | 192 | Protein_353 | IS66 family transposase ISSfl3 | Transposase |
| C1P87_RS01880 () | 373474..374331 | + | 858 | Protein_355 | IS3 family transposase ISSd1 | Transposase |
| C1P87_RS01885 () | 374372..374851 | + | 480 | Protein_356 | DUF4376 domain-containing protein | - |
| C1P87_RS01895 () | 375031..376674 | - | 1644 | WP_011110600.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P87_RS01900 () | 376990..377658 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| C1P87_RS01905 () | 377715..377984 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| C1P87_RS01915 () | 379062..379712 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| C1P87_RS01920 () | 379970..380605 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P87_RS01925 () | 380606..381610 | - | 1005 | Protein_362 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P87_RS01930 () | 381719..382132 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| C1P87_RS01935 () | 382265..382936 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| C1P87_RS01940 () | 382936..383883 | + | 948 | Protein_365 | two-component system sensor histidine kinase HprS | - |
| C1P87_RS25975 () | 384491..384748 | + | 258 | WP_064198923.1 | hypothetical protein | - |
| C1P87_RS01955 () | 385220..385390 | - | 171 | Protein_368 | porin | - |
| C1P87_RS01960 () | 385493..386721 | + | 1229 | WP_134798208.1 | IS3 family transposase IS2 | Transposase |
| C1P87_RS01965 () | 386733..387443 | - | 711 | Protein_370 | porin | - |
| C1P87_RS01970 () | 387560..388707 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| C1P87_RS01975 () | 388708..388965 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| C1P87_RS01980 () | 389005..389545 | + | 541 | Protein_373 | phosphohydrolase | - |
| C1P87_RS01985 () | 389612..391030 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| C1P87_RS01990 () | 391011..391481 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| C1P87_RS01995 () | 391470..392390 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| C1P87_RS02000 () | 392563..393480 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| C1P87_RS02005 () | 393559..393741 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| C1P87_RS02010 () | 393912..395606 | + | 1695 | Protein_379 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|