MGE detailed information

MGE type: Conjugative plasmid        MGE length: 201203 bp
Accession: NZ_CP026494        Location: 1..201203         Organism: Escherichia coli strain HS13-1       Replicon: plasmid pHS13-1-IncF


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C3K24_RS27925 () 274..1131 - 858 WP_001101723.1 iron/manganese ABC transporter permease subunit SitC -
C3K24_RS27930 () 1128..1955 - 828 WP_000983710.1 iron/manganese ABC transporter ATP-binding protein SitB -
C3K24_RS27935 () 1955..2869 - 915 WP_000949004.1 iron/manganese ABC transporter substrate-binding protein SitA -
C3K24_RS27950 () 3225..3922 + 698 Protein_4 IS1 family transposase -
C3K24_RS27955 () 4102..4615 - 514 Protein_5 DUF4113 domain-containing protein -
C3K24_RS29640 () 4676..4780 - 105 Protein_6 AAA family ATPase -
C3K24_RS27965 () 4782..5105 - 324 Protein_7 helix-turn-helix domain-containing protein -
C3K24_RS27975 () 5851..6828 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
C3K24_RS27980 () 7113..7853 - 741 WP_001066954.1 tyrosine-type recombinase/integrase -
C3K24_RS27985 () 7974..8162 - 189 WP_001312821.1 hypothetical protein -
C3K24_RS27990 () 8537..9439 - 903 WP_001312822.1 antimicrobial resistance protein Mig-14 -
C3K24_RS27995 () 9508..10617 - 1110 WP_001696610.1 SDR family oxidoreductase -
C3K24_RS28005 () 11049..12002 - 954 WP_000280980.1 omptin family outer membrane protease -
C3K24_RS28020 () 13275..13691 - 417 WP_001595315.1 IS3 family transposase -
C3K24_RS28025 () 15406..16593 + 1188 WP_001696612.1 efflux RND transporter periplasmic adaptor subunit -
C3K24_RS28030 () 16590..18530 + 1941 WP_001610286.1 MacB family efflux pump subunit -
C3K24_RS28035 () 18534..19904 + 1371 WP_001696614.1 efflux transporter outer membrane subunit -
C3K24_RS28040 () 20235..21548 + 1314 Protein_18 IS4 family transposase -
C3K24_RS28045 () 22300..23076 + 777 WP_001610297.1 hypothetical protein -
C3K24_RS28050 () 23078..25342 + 2265 WP_104976717.1 UvrD-helicase domain-containing protein -
C3K24_RS28055 () 25593..25697 + 105 Protein_21 transposase -
C3K24_RS28060 () 26103..27448 - 1346 Protein_22 ISNCY family transposase -
C3K24_RS28065 () 27684..28055 - 372 WP_001610302.1 hypothetical protein -
C3K24_RS28070 () 28098..28565 - 468 WP_001610303.1 hypothetical protein -
C3K24_RS28075 () 28565..28834 - 270 WP_001610304.1 hypothetical protein -
C3K24_RS28080 () 29066..30463 - 1398 WP_001610305.1 ISNCY family transposase -
C3K24_RS28085 () 30771..30920 - 150 Protein_27 IS3 family transposase -
C3K24_RS28090 () 31098..32291 - 1194 WP_000450493.1 GTP-binding protein -
C3K24_RS28100 () 34681..34974 + 294 WP_000738422.1 increased serum survival lipoprotein Iss -
C3K24_RS29385 () 35032..35173 - 142 Protein_31 lysis system i-spanin subunit Rz -
C3K24_RS28115 () 35784..36883 + 1100 Protein_32 transposase -
C3K24_RS28125 () 38119..39234 + 1116 WP_001318220.1 salmochelin biosynthesis C-glycosyltransferase IroB -
C3K24_RS28130 () 39374..43033 + 3660 WP_001442133.1 salmochelin/enterobactin export ABC transporter IroC -
C3K24_RS28135 () 43137..44366 + 1230 WP_000933675.1 catecholate siderophore esterase IroD -
C3K24_RS28140 () 44451..45407 + 957 WP_000271277.1 catecholate siderophore esterase IroE -
C3K24_RS28145 () 45452..47629 - 2178 WP_001222186.1 siderophore salmochelin receptor IroN -
C3K24_RS28165 () 48474..49508 - 1035 WP_001190233.1 3-deoxy-7-phosphoheptulonate synthase -
C3K24_RS28175 () 50068..50376 - 309 WP_000377483.1 hypothetical protein -
C3K24_RS28180 () 50475..50657 - 183 WP_000969988.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
C3K24_RS28185 () 50654..50851 - 198 WP_001324224.1 toxin-antitoxin system protein Antitoxin Detail
C3K24_RS28190 () 51533..52807 + 1275 WP_000489608.1 HlyD family secretion protein -
C3K24_RS28195 () 52782..54896 + 2115 WP_001183603.1 peptidase domain-containing ABC transporter -
C3K24_RS28200 () 55066..55377 - 312 WP_001259758.1 colicin V -
C3K24_RS29390 () 55355..55591 - 237 WP_001323890.1 colicin V immunity protein -
C3K24_RS28210 () 55752..56529 + 778 Protein_46 gfo/Idh/MocA family oxidoreductase -
C3K24_RS28215 () 56531..56800 + 270 WP_000379710.1 SemiSWEET transporter -
C3K24_RS28220 () 56797..57777 + 981 WP_001017347.1 NAD(P)-binding domain-containing protein -
C3K24_RS28225 () 57844..58233 + 390 WP_001282162.1 transposase -
C3K24_RS28230 () 58230..58577 + 348 WP_000612591.1 IS66 family insertion sequence element accessory protein TnpB -
C3K24_RS28235 () 58627..59901 + 1275 Protein_51 IS66 family transposase -
C3K24_RS28240 () 59941..60207 + 267 Protein_52 resolvase -
C3K24_RS28245 () 60194..60645 - 452 Protein_53 peptide deformylase -
C3K24_RS28250 () 60754..64887 - 4134 WP_104976718.1 hemoglobin-binding protease autotransporter Hbp -
C3K24_RS29395 () 65055..65249 + 195 Protein_55 IS91 family transposase -
C3K24_RS29400 () 65217..65432 - 216 Protein_56 helix-turn-helix domain-containing protein -
C3K24_RS28260 () 65528..65785 + 258 Protein_57 IS3 family transposase -
C3K24_RS28265 () 65853..67004 + 1152 WP_029402714.1 IS30-like element IS30 family transposase -
C3K24_RS28275 () 67126..67491 + 366 WP_000124098.1 hypothetical protein -
C3K24_RS28280 () 67491..67756 + 266 Protein_60 transposase zinc-binding domain-containing protein -
C3K24_RS28285 () 67958..68968 + 1011 WP_000487120.1 IS110 family transposase -
C3K24_RS28295 () 69546..70136 + 591 WP_000086538.1 recombinase family protein -
C3K24_RS28300 () 70183..70341 + 159 Protein_63 integrase core domain-containing protein -
C3K24_RS28305 () 70491..71489 + 999 WP_000756335.1 ABC transporter substrate-binding protein -
C3K24_RS28310 () 71489..72526 + 1038 WP_000110581.1 iron ABC transporter permease -
C3K24_RS28315 () 72526..73287 + 762 WP_000020503.1 ABC transporter ATP-binding protein -
C3K24_RS28320 () 73344..74531 + 1188 WP_025999368.1 MFS transporter -
C3K24_RS28325 () 74609..74866 - 258 WP_000412701.1 bacteriocin immunity protein -
C3K24_RS28330 () 74867..75100 - 234 WP_000451769.1 HNH endonuclease -
C3K24_RS28335 () 75196..75467 + 272 Protein_70 hypothetical protein -
C3K24_RS29645 () 75628..75807 - 180 Protein_71 3'-5' exonuclease -
C3K24_RS28345 () 75853..76020 - 168 Protein_72 type II toxin-antitoxin system RelE/ParE family toxin -
C3K24_RS28350 () 76017..76847 + 831 Protein_73 IS66-like element ISEc43 family transposase -
C3K24_RS29650 () 76891..77539 - 649 Protein_74 DDE-type integrase/transposase/recombinase -
C3K24_RS28365 () 77596..78027 + 432 Protein_75 relaxase NikB -
C3K24_RS28370 () 78486..79154 + 669 WP_000155780.1 cysteine hydrolase -
C3K24_RS28375 () 79160..80020 + 861 WP_104976719.1 DUF2877 domain-containing protein -
C3K24_RS28380 () 80115..81674 + 1560 WP_000865634.1 acyl-CoA synthetase FdrA -
C3K24_RS28385 () 81671..83095 + 1425 WP_001093931.1 DUF1116 domain-containing protein -
C3K24_RS28390 () 83088..84044 + 957 WP_001696801.1 carbamate kinase -
C3K24_RS28395 () 84061..84450 + 390 WP_001696803.1 hypothetical protein -
C3K24_RS28400 () 84473..85696 + 1224 WP_024188138.1 cytosine permease -
C3K24_RS28405 () 85774..86664 + 891 WP_000470711.1 LysR family transcriptional regulator -
C3K24_RS28410 () 87098..87487 + 390 WP_000595317.1 cytochrome B562 -
C3K24_RS28420 () 87694..88727 + 1034 Protein_85 IS3 family transposase -
C3K24_RS29655 () 88722..89198 + 477 Protein_86 ATP-binding cassette domain-containing protein -
C3K24_RS28425 () 89876..90166 - 291 WP_000633743.1 hypothetical protein -
C3K24_RS28430 () 90224..90889 - 666 WP_000536047.1 hypothetical protein -
C3K24_RS28435 () 90992..91270 - 279 Protein_89 serine acetyltransferase -
C3K24_RS28440 () 91286..91983 - 698 Protein_90 IS1-like element IS1A family transposase -
C3K24_RS29415 () 92648..92968 + 321 WP_001334006.1 IS3 family transposase -
C3K24_RS28455 () 93642..94571 - 930 WP_001084376.1 LysR family transcriptional regulator -
C3K24_RS28460 () 94959..95564 + 606 WP_000066154.1 ankyrin repeat domain-containing protein -
C3K24_RS28465 () 95650..96498 + 849 WP_000531854.1 DUF2877 domain-containing protein -
C3K24_RS28470 () 96458..98005 + 1548 WP_000027750.1 acyl-CoA synthetase FdrA -
C3K24_RS28475 () 98005..99423 + 1419 WP_000084168.1 DUF1116 domain-containing protein -
C3K24_RS28480 () 99536..101086 + 1551 WP_001084509.1 hypothetical protein -
C3K24_RS28485 () 101113..102075 + 963 WP_000661609.1 carbamate kinase family protein -
C3K24_RS28490 () 102911..104132 - 1222 Protein_99 ISL3 family transposase -
C3K24_RS28500 () 104232..104596 + 365 Protein_100 IS1 family transposase -
C3K24_RS28505 () 104651..105433 - 783 WP_001442137.1 IS21-like element IS100kyp family helper ATPase IstB -
C3K24_RS28510 () 105430..106452 - 1023 WP_001310017.1 IS21-like element IS100 family transposase -
C3K24_RS28520 () 106541..106888 + 348 Protein_103 IS1-like element IS1A family transposase -
C3K24_RS28530 () 107328..107615 - 288 WP_000222760.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
C3K24_RS28535 () 107612..107863 - 252 WP_001132900.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin Detail
C3K24_RS28540 () 108758..110509 - 1752 Protein_106 Tn3-like element TnAs1 family transposase -
C3K24_RS28545 () 110498..110905 + 408 WP_001214976.1 cysteine hydrolase -
C3K24_RS28550 () 111043..111927 + 885 WP_000058717.1 EamA family transporter -
C3K24_RS28555 () 111959..113158 - 1200 WP_001493765.1 tetracycline efflux MFS transporter Tet(A) -
C3K24_RS28560 () 113264..113914 + 651 WP_000164043.1 tetracycline resistance transcriptional repressor TetR(A) -
C3K24_RS28565 () 113946..114188 - 243 WP_000844627.1 transposase -
C3K24_RS28570 () 114246..117212 - 2967 WP_001138014.1 Tn3-like element TnAs1 family transposase -
C3K24_RS28575 () 117216..117776 - 561 WP_001161490.1 recombinase family protein -
C3K24_RS28580 () 118086..119663 + 1578 WP_001323889.1 PAS domain-containing methyl-accepting chemotaxis protein -
C3K24_RS28585 () 119960..120817 - 858 WP_019842754.1 incFII family plasmid replication initiator RepA -
C3K24_RS28590 () 120810..121292 - 483 WP_001273588.1 hypothetical protein -
C3K24_RS28595 () 121285..121359 - 75 WP_001442103.1 RepA leader peptide Tap -
C3K24_RS28605 () 121591..121848 - 258 WP_000083845.1 replication regulatory protein RepA -
C3K24_RS28610 () 122132..122338 - 207 WP_001351576.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 122325..122386 + 62 NuclAT_1 - -
- () 122325..122386 + 62 NuclAT_1 - -
- () 122325..122386 + 62 NuclAT_1 - -
- () 122325..122386 + 62 NuclAT_1 - -
C3K24_RS29660 () 122642..122716 - 75 Protein_120 endonuclease -
C3K24_RS28620 () 122962..123174 - 213 WP_001299730.1 ANR family transcriptional regulator -
C3K24_RS28625 () 123310..123870 - 561 WP_000139315.1 fertility inhibition protein FinO -
C3K24_RS28630 () 123973..124833 - 861 WP_000704513.1 alpha/beta hydrolase -
C3K24_RS28635 () 124892..125638 - 747 WP_000205749.1 conjugal transfer pilus acetylase TraX -
C3K24_RS28640 () 125658..130928 - 5271 WP_021543133.1 conjugative transfer relaxase/helicase TraI -
C3K24_RS28645 () 131010..131237 + 228 WP_000450520.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
C3K24_RS28650 () 131237..131635 + 399 WP_000911333.1 tRNA(fMet)-specific endonuclease VapC Toxin Detail
C3K24_RS28655 () 131644..133797 - 2154 WP_000009379.1 type IV conjugative transfer system coupling protein TraD -
C3K24_RS28660 () 134050..134781 - 732 WP_000850416.1 complement resistance protein TraT -
C3K24_RS28665 () 134795..135304 - 510 WP_000628105.1 conjugal transfer entry exclusion protein TraS -
C3K24_RS28670 () 135301..138126 - 2826 WP_001007036.1 conjugal transfer mating pair stabilization protein TraG -
C3K24_RS28675 () 138123..139496 - 1374 WP_000944319.1 conjugal transfer protein TraH -
C3K24_RS29420 () 139483..139875 - 393 Protein_133 F-type conjugal transfer protein TrbF -
C3K24_RS28690 () 139862..140203 - 342 WP_001442101.1 P-type conjugative transfer protein TrbJ -
C3K24_RS28695 () 140133..140678 - 546 WP_000059833.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
C3K24_RS28700 () 140665..140949 - 285 WP_000624108.1 type-F conjugative transfer system pilin chaperone TraQ -
C3K24_RS28705 () 141030..141305 + 276 WP_001513501.1 hypothetical protein -
C3K24_RS28710 () 141307..141654 - 348 WP_001287907.1 conjugal transfer protein TrbA -
C3K24_RS28715 () 141670..142413 - 744 WP_001030378.1 type-F conjugative transfer system pilin assembly protein TraF -
C3K24_RS28720 () 142406..142663 - 258 WP_000864318.1 conjugal transfer protein TrbE -
C3K24_RS28725 () 142690..144498 - 1809 WP_000821867.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
C3K24_RS28730 () 144495..145133 - 639 WP_000777703.1 type-F conjugative transfer system pilin assembly protein TrbC -
C3K24_RS28735 () 145142..146134 - 993 WP_000830183.1 conjugal transfer pilus assembly protein TraU -
C3K24_RS28740 () 146131..146763 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
C3K24_RS28745 () 146760..147146 - 387 WP_000099688.1 type-F conjugative transfer system protein TrbI -
C3K24_RS28750 () 147143..149770 - 2628 WP_001064245.1 type IV secretion system protein TraC -
C3K24_RS28755 () 149930..150151 - 222 WP_001278690.1 conjugal transfer protein TraR -
C3K24_RS28760 () 150286..150801 - 516 WP_000809834.1 type IV conjugative transfer system lipoprotein TraV -
C3K24_RS28765 () 150798..151049 - 252 WP_001038351.1 conjugal transfer protein TrbG -
C3K24_RS28770 () 151061..151291 - 231 WP_001352845.1 conjugal transfer protein TrbD -
C3K24_RS28775 () 151245..151835 - 591 WP_000002787.1 conjugal transfer protein TraP -
C3K24_RS28780 () 151825..153252 - 1428 WP_000146685.1 conjugal transfer protein TraB -
C3K24_RS28785 () 153252..153956 - 705 WP_072095570.1 type-F conjugative transfer system secretin TraK -
C3K24_RS28790 () 153967..154533 - 567 WP_000399774.1 type IV conjugative transfer system protein TraE -
C3K24_RS28795 () 154555..154866 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
C3K24_RS28800 () 154881..155246 - 366 WP_000340276.1 type IV conjugative transfer system pilin TraA -
C3K24_RS28805 () 155280..155507 - 228 WP_001442099.1 conjugal transfer relaxosome protein TraY -
C3K24_RS28810 () 155601..156287 - 687 WP_000332490.1 PAS domain-containing protein -
C3K24_RS28815 () 156477..156860 - 384 WP_000124981.1 relaxosome protein TraM -
C3K24_RS28825 () 157194..157784 + 591 WP_000252676.1 transglycosylase SLT domain-containing protein -
C3K24_RS28830 () 158080..158901 - 822 WP_001234485.1 DUF945 domain-containing protein -
C3K24_RS28835 () 159080..159692 + 613 Protein_162 hypothetical protein -
C3K24_RS28840 () 159930..160091 - 162 WP_001332444.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 160144..160355 - 212 NuclAT_0 - -
- () 160144..160355 - 212 NuclAT_0 - -
- () 160144..160355 - 212 NuclAT_0 - -
- () 160144..160355 - 212 NuclAT_0 - -
C3K24_RS28850 () 160366..161085 - 720 WP_001276275.1 plasmid SOS inhibition protein A -
C3K24_RS28855 () 161082..161516 - 435 WP_000845935.1 conjugation system SOS inhibitor PsiB -
C3K24_RS28860 () 161571..163529 - 1959 Protein_166 ParB/RepB/Spo0J family partition protein -
C3K24_RS28865 () 163588..163821 - 234 WP_001209608.1 DUF905 domain-containing protein -
C3K24_RS28870 () 163884..164381 - 498 WP_050427786.1 single-stranded DNA-binding protein -
C3K24_RS28885 () 165033..165730 + 698 Protein_169 IS1 family transposase -
C3K24_RS28890 () 165787..167010 - 1224 WP_001696651.1 tyrosine-type recombinase/integrase -
C3K24_RS28895 () 167087..167998 - 912 WP_001442123.1 hypothetical protein -
C3K24_RS28900 () 167995..168993 - 999 WP_101357015.1 site-specific integrase -
C3K24_RS28905 () 169056..170201 + 1146 Protein_173 translesion error-prone DNA polymerase V subunit UmuC -
C3K24_RS28915 () 170338..171309 - 972 WP_001233385.1 ParB/RepB/Spo0J family partition protein -
C3K24_RS28920 () 171306..172511 - 1206 WP_001442122.1 AAA family ATPase -
C3K24_RS28925 () 173132..173863 + 732 WP_000504262.1 replication initiation protein -
C3K24_RS28930 () 174543..175349 - 807 WP_021543129.1 site-specific integrase -
C3K24_RS28935 () 175350..175655 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
C3K24_RS28940 () 175657..175875 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
C3K24_RS28950 () 176441..176953 + 513 WP_000151784.1 hypothetical protein -
C3K24_RS28955 () 176987..178120 - 1134 WP_000545987.1 DUF3800 domain-containing protein -
C3K24_RS28960 () 178287..179060 - 774 WP_000905949.1 hypothetical protein -
C3K24_RS28965 () 179073..179573 - 501 WP_000528932.1 hypothetical protein -
C3K24_RS28970 () 179838..180068 + 231 WP_001261278.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
C3K24_RS28975 () 180065..180481 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
C3K24_RS28980 () 180526..184319 - 3794 Protein_186 pcar -
C3K24_RS28985 () 184700..184930 + 231 WP_001261286.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
C3K24_RS28990 () 184927..185343 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
C3K24_RS28995 () 185418..186983 + 1566 WP_001128474.1 AAA family ATPase -
C3K24_RS29000 () 186968..187990 + 1023 WP_000361402.1 helicase UvrD -
C3K24_RS29010 () 188244..188941 - 698 Protein_191 IS1 family transposase -
C3K24_RS29025 () 189321..191522 - 2202 WP_000973519.1 ferric aerobactin receptor IutA -
C3K24_RS29030 () 191604..192881 - 1278 WP_000750130.1 NADPH-dependent L-lysine N(6)-monooxygenase -
C3K24_RS29035 () 192878..194620 - 1743 WP_001015721.1 aerobactin synthase IucC -
C3K24_RS29040 () 194620..195567 - 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase -
C3K24_RS29045 () 195568..197292 - 1725 WP_000602863.1 aerobactin synthase IucA -
C3K24_RS29050 () 197428..198621 + 1194 WP_000095528.1 MFS transporter -
C3K24_RS29055 () 199001..199381 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
C3K24_RS29065 () 199722..200135 - 414 Protein_199 phosphopyruvate hydratase -
C3K24_RS29070 () 200133..200389 + 257 Protein_200 Tn3 family transposase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance