MGE detailed information
MGE type: Conjugative plasmid MGE length: 85535 bp
Accession: NZ_CP025709 Location: 1..85535 Organism: Escherichia coli strain YDC107 Replicon: plasmid pYDC107_85 map unlocalized
Accession: NZ_CP025709 Location: 1..85535 Organism: Escherichia coli strain YDC107 Replicon: plasmid pYDC107_85 map unlocalized
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS26600 (1) | 1..1100 | - | 1100 | WP_021293554.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| YDC107_RS26605 (1088) | 1088..1744 | - | 657 | WP_001401940.1 | hypothetical protein | VF |
| YDC107_RS26610 (1729) | 1729..2289 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| YDC107_RS26615 (2299) | 2299..2913 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| YDC107_RS26620 (2930) | 2930..4015 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| YDC107_RS26625 (4028) | 4028..5581 | - | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| YDC107_RS26630 (5592) | 5592..6044 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| YDC107_RS26635 (6031) | 6031..7326 | - | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| YDC107_RS26640 (7319) | 7319..9001 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| YDC107_RS26645 (9015) | 9015..9452 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| YDC107_RS26650 (9452) | 9452..10519 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| YDC107_RS26665 (11566) | 11566..11820 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| YDC107_RS28570 (12271) | 12271..12675 | - | 405 | WP_249825099.1 | hypothetical protein | - |
| YDC107_RS26685 (12929) | 12929..13462 | - | 534 | WP_001712498.1 | transcription termination/antitermination NusG family protein | - |
| YDC107_RS26695 (13904) | 13904..14191 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| YDC107_RS28705 (14109) | 14109..14387 | - | 279 | WP_219334566.1 | ash family protein | - |
| YDC107_RS26715 (15344) | 15344..16375 | + | 1032 | WP_023518831.1 | plasmid replication initiator RepA | - |
| YDC107_RS28250 (17071) | 17071..17211 | + | 141 | WP_032072206.1 | hypothetical protein | - |
| YDC107_RS26735 (17444) | 17444..17953 | - | 510 | WP_012783913.1 | hypothetical protein | - |
| YDC107_RS26740 (18009) | 18009..18611 | - | 603 | WP_001703912.1 | ProQ/FINO family protein | - |
| YDC107_RS26750 (18965) | 18965..20311 | + | 1347 | WP_001703911.1 | protein YagA | - |
| YDC107_RS28255 (20810) | 20810..21112 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| YDC107_RS26765 (21109) | 21109..21735 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| YDC107_RS26770 (21923) | 21923..23194 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| YDC107_RS26775 (23194) | 23194..23631 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| YDC107_RS26780 (23628) | 23628..23876 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| YDC107_RS26790 (24294) | 24294..25196 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| YDC107_RS28580 (25200) | 25200..25286 | + | 87 | Protein_27 | hypothetical protein | - |
| YDC107_RS26795 (25291) | 25291..25626 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| YDC107_RS26800 (25964) | 25964..26944 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| YDC107_RS26805 (26947) | 26947..27369 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| YDC107_RS26810 (27373) | 27373..27684 | + | 312 | WP_096035146.1 | hypothetical protein | - |
| YDC107_RS26815 (27760) | 27760..28443 | + | 684 | WP_000086127.1 | DNA methylase | - |
| YDC107_RS26820 (28444) | 28444..28665 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| YDC107_RS26825 (28595) | 28595..29113 | + | 519 | WP_202864534.1 | DUF1380 family protein | - |
| YDC107_RS26830 (29158) | 29158..29928 | + | 771 | WP_011264064.1 | hypothetical protein | - |
| YDC107_RS26840 (30346) | 30346..30771 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| YDC107_RS26845 (30818) | 30818..31240 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| YDC107_RS26850 (31237) | 31237..31428 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| YDC107_RS26860 (31499) | 31499..31813 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| YDC107_RS26870 (32197) | 32197..32724 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| YDC107_RS26875 (32782) | 32782..33015 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| YDC107_RS26880 (33074) | 33074..35032 | + | 1959 | WP_011264061.1 | ParB/RepB/Spo0J family partition protein | - |
| YDC107_RS26885 (35085) | 35085..35519 | + | 435 | WP_001402001.1 | conjugation system SOS inhibitor PsiB | - |
| YDC107_RS26890 (35516) | 35516..36235 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| YDC107_RS26895 (36232) | 36232..36828 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| YDC107_RS26905 (37290) | 37290..37790 | + | 501 | WP_000117626.1 | antirestriction protein ArdA | - |
| YDC107_RS26920 (38519) | 38519..38953 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| YDC107_RS26925 (39047) | 39047..39313 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| YDC107_RS26930 (39490) | 39490..39879 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| YDC107_RS26935 (39876) | 39876..40778 | + | 903 | WP_011264057.1 | Recombination-promoting nuclease RpnA | VF |
| YDC107_RS26940 (40840) | 40840..41034 | + | 195 | WP_032180668.1 | hypothetical protein | - |
| YDC107_RS26945 (41065) | 41065..41316 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| YDC107_RS26960 (41896) | 41896..42744 | + | 849 | WP_001599394.1 | DUF4942 domain-containing protein | - |
| YDC107_RS26965 (42831) | 42831..43166 | - | 336 | WP_021529212.1 | hypothetical protein | - |
| YDC107_RS26970 (43400) | 43400..43732 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| YDC107_RS26975 (43743) | 43743..46442 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| YDC107_RS26980 (46480) | 46480..48771 | - | 2292 | WP_077769471.1 | F-type conjugative transfer protein TrbC | - |
| YDC107_RS26985 (48764) | 48764..49834 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| YDC107_RS26990 (49853) | 49853..51061 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (51241) | 51241..51298 | - | 58 | NuclAT_1 | - | - |
| - (51241) | 51241..51298 | - | 58 | NuclAT_1 | - | - |
| - (51241) | 51241..51298 | - | 58 | NuclAT_1 | - | - |
| - (51241) | 51241..51298 | - | 58 | NuclAT_1 | - | - |
| YDC107_RS26995 (51368) | 51368..52150 | - | 783 | WP_023063753.1 | protein FinQ | - |
| YDC107_RS27000 (52346) | 52346..52663 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| YDC107_RS27005 (52660) | 52660..53193 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| YDC107_RS27010 (53287) | 53287..54420 | - | 1134 | WP_063859842.1 | Beta-lactamase | ARG |
| YDC107_RS27015 (54744) | 54744..56006 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| YDC107_RS27020 (56159) | 56159..56533 | - | 375 | WP_223349261.1 | hypothetical protein | - |
| - (56742) | 56742..56802 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (56742) | 56742..56802 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (56742) | 56742..56802 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (56742) | 56742..56802 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| YDC107_RS27025 (56854) | 56854..57006 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| YDC107_RS27030 (56996) | 56996..57208 | - | 213 | WP_050485428.1 | hypothetical protein | - |
| YDC107_RS28710 (57709) | 57709..57804 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| YDC107_RS28260 (57869) | 57869..58045 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| YDC107_RS27040 (58437) | 58437..58646 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| YDC107_RS27045 (58718) | 58718..59380 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| YDC107_RS27050 (59451) | 59451..61619 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| YDC107_RS27055 (61716) | 61716..62300 | - | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| YDC107_RS27060 (62329) | 62329..63531 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| YDC107_RS27065 (63498) | 63498..64112 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| YDC107_RS27070 (64112) | 64112..67156 | - | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| YDC107_RS27075 (67246) | 67246..68046 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| YDC107_RS27080 (68030) | 68030..68218 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| YDC107_RS27085 (68282) | 68282..68686 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| YDC107_RS27090 (68737) | 68737..69264 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| YDC107_RS27095 (69264) | 69264..69968 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| YDC107_RS27100 (69968) | 69968..71257 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| YDC107_RS27105 (71260) | 71260..72243 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| YDC107_RS27110 (72254) | 72254..72946 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| YDC107_RS27115 (72943) | 72943..73290 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| YDC107_RS27120 (73308) | 73308..77075 | - | 3768 | WP_023518849.1 | DUF5710 domain-containing protein | - |
| YDC107_RS27125 (77165) | 77165..77716 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| YDC107_RS27130 (77731) | 77731..78021 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| YDC107_RS27135 (78018) | 78018..79166 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| YDC107_RS27140 (79163) | 79163..79981 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| YDC107_RS27145 (79978) | 79978..80436 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| YDC107_RS27150 (80831) | 80831..81415 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| YDC107_RS27155 (81475) | 81475..82677 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| YDC107_RS27160 (82763) | 82763..83587 | - | 825 | WP_023518851.1 | conjugal transfer protein TraE | - |
| YDC107_RS27165 (83738) | 83738..84892 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| YDC107_RS28585 (85205) | 85205..85535 | - | 331 | Protein_96 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|