MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 96745 bp
Accession: NZ_CP025084 Location: 4349591..4446335 Organism: Serratia sp. ATCC 39006 Replicon: chromosome
Accession: NZ_CP025084 Location: 4349591..4446335 Organism: Serratia sp. ATCC 39006 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SER39006_RS19750 () | 4344968..4346431 | + | 1464 | WP_021014821.1 | L-asparagine permease | - |
| SER39006_RS19755 () | 4346481..4348634 | - | 2154 | WP_021014820.1 | ornithine decarboxylase | - |
| SER39006_RS19765 () | 4349591..4350553 | - | 963 | WP_021014819.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SER39006_RS19770 () | 4350594..4351463 | - | 870 | WP_101377568.1 | DNA-binding domain-containing protein | - |
| SER39006_RS19775 () | 4352285..4352839 | + | 555 | WP_021014817.1 | hypothetical protein | - |
| SER39006_RS19780 () | 4353147..4354091 | + | 945 | WP_021014815.1 | hypothetical protein | - |
| SER39006_RS19785 () | 4354217..4355422 | + | 1206 | WP_021014814.1 | conjugal transfer protein TraF | - |
| SER39006_RS19790 () | 4355475..4356020 | + | 546 | WP_021014813.1 | hypothetical protein | - |
| SER39006_RS19800 () | 4356543..4357226 | - | 684 | WP_021014812.1 | type I restriction-modification system subunit M | - |
| SER39006_RS19805 () | 4357334..4357693 | - | 360 | WP_021014811.1 | hypothetical protein | - |
| SER39006_RS19810 () | 4357695..4358621 | - | 927 | WP_021014810.1 | DUF1281 domain-containing protein | - |
| SER39006_RS19815 () | 4358722..4359009 | - | 288 | WP_051391490.1 | TA system toxin CbtA family protein | - |
| SER39006_RS19820 () | 4359018..4360019 | - | 1002 | WP_021014808.1 | DUF1738 domain-containing protein | - |
| SER39006_RS19825 () | 4360262..4360591 | - | 330 | WP_021014807.1 | hypothetical protein | - |
| SER39006_RS19830 () | 4360700..4361041 | - | 342 | WP_021014806.1 | hypothetical protein | - |
| SER39006_RS19835 () | 4361904..4363078 | + | 1175 | WP_101377519.1 | IS3 family transposase ISSlo2 | Transposase |
| SER39006_RS19840 () | 4363327..4363947 | + | 621 | WP_021014805.1 | LysE family translocator | - |
| SER39006_RS19845 () | 4364059..4367682 | - | 3624 | WP_021014804.1 | hypothetical protein | - |
| SER39006_RS19850 () | 4368026..4369546 | + | 1521 | WP_021014803.1 | ISNCY family transposase ISShha1 | Transposase |
| SER39006_RS19860 () | 4369930..4370853 | - | 924 | WP_021014801.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| SER39006_RS22940 () | 4371935..4372348 | + | 414 | WP_021014800.1 | hypothetical protein | - |
| SER39006_RS19875 () | 4372702..4373340 | - | 639 | WP_021014799.1 | hypothetical protein | - |
| SER39006_RS19880 () | 4373328..4373663 | - | 336 | WP_021014798.1 | hypothetical protein | - |
| SER39006_RS22945 () | 4374103..4374363 | + | 261 | WP_021014797.1 | hypothetical protein | - |
| SER39006_RS19885 () | 4374503..4375384 | + | 882 | WP_021014796.1 | CRISPR-associated endonuclease Cas1 | - |
| SER39006_RS19890 () | 4375377..4375673 | + | 297 | WP_021014795.1 | CRISPR-associated endonuclease Cas2 | - |
| SER39006_RS19895 () | 4376785..4379235 | + | 2451 | WP_021014794.1 | type III-A CRISPR-associated protein Cas10/Csm1 | - |
| SER39006_RS19900 () | 4379260..4379643 | + | 384 | WP_021014793.1 | type III-A CRISPR-associated protein Csm2 | - |
| SER39006_RS19905 () | 4379656..4380402 | + | 747 | WP_021014792.1 | type III-A CRISPR-associated RAMP protein Csm3 | - |
| SER39006_RS19910 () | 4380402..4381382 | + | 981 | WP_021014791.1 | hypothetical protein | - |
| SER39006_RS19915 () | 4381379..4383058 | + | 1680 | WP_021014790.1 | DUF324 domain-containing protein | - |
| SER39006_RS19920 () | 4383055..4383978 | + | 924 | WP_021014789.1 | CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6 | - |
| SER39006_RS19925 () | 4384031..4384783 | - | 753 | WP_021014788.1 | hypothetical protein | - |
| SER39006_RS19930 () | 4385856..4386242 | + | 387 | WP_157831389.1 | hypothetical protein | - |
| SER39006_RS19935 () | 4386281..4387810 | - | 1530 | WP_021014786.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| SER39006_RS19940 () | 4387822..4388175 | - | 354 | WP_021014785.1 | hypothetical protein | - |
| SER39006_RS19945 () | 4388172..4389590 | - | 1419 | WP_021014784.1 | integrating conjugative element protein | - |
| SER39006_RS19950 () | 4389601..4390575 | - | 975 | WP_021014783.1 | TIGR03756 family integrating conjugative element protein | - |
| SER39006_RS19955 () | 4390572..4390976 | - | 405 | WP_021014782.1 | TIGR03757 family integrating conjugative element protein | - |
| SER39006_RS19960 () | 4391278..4391529 | + | 252 | WP_021014781.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| SER39006_RS19965 () | 4391526..4391813 | + | 288 | WP_021014780.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SER39006_RS19970 () | 4391955..4392353 | - | 399 | WP_021014779.1 | hypothetical protein | - |
| SER39006_RS19975 () | 4392350..4395169 | - | 2820 | WP_021014778.1 | conjugative transfer ATPase | - |
| SER39006_RS19980 () | 4395169..4395576 | - | 408 | WP_021014777.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| SER39006_RS19985 () | 4395662..4397185 | - | 1524 | WP_021014776.1 | TIGR03752 family integrating conjugative element protein | - |
| SER39006_RS19990 () | 4397182..4398054 | - | 873 | WP_037381288.1 | TIGR03749 family integrating conjugative element protein | - |
| SER39006_RS19995 () | 4398075..4398734 | - | 660 | WP_021014774.1 | TIGR03746 family integrating conjugative element protein | - |
| SER39006_RS20000 () | 4398731..4399105 | - | 375 | WP_021014773.1 | TIGR03750 family conjugal transfer protein | - |
| SER39006_RS20005 () | 4399115..4399465 | - | 351 | WP_021014772.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| SER39006_RS20010 () | 4399481..4399726 | - | 246 | WP_021014771.1 | TIGR03758 family integrating conjugative element protein | - |
| SER39006_RS20015 () | 4399726..4400040 | - | 315 | WP_021014770.1 | RAQPRD family integrative conjugative element protein | - |
| SER39006_RS20020 () | 4400682..4400927 | + | 246 | WP_051391489.1 | hypothetical protein | - |
| SER39006_RS20025 () | 4400982..4401215 | - | 234 | WP_021014768.1 | PerC family transcriptional regulator | - |
| SER39006_RS20030 () | 4401223..4401981 | - | 759 | WP_021014767.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| SER39006_RS20035 () | 4401981..4404086 | - | 2106 | WP_021014766.1 | type IV conjugative transfer system coupling protein TraD | - |
| SER39006_RS20040 () | 4404083..4404670 | - | 588 | WP_021014765.1 | restriction endonuclease | - |
| SER39006_RS20045 () | 4404667..4405185 | - | 519 | WP_021014764.1 | integrating conjugative element protein | - |
| SER39006_RS20050 () | 4405182..4405820 | - | 639 | WP_021014763.1 | hypothetical protein | VF |
| SER39006_RS20055 () | 4405799..4406521 | - | 723 | WP_051391466.1 | TIGR03759 family integrating conjugative element protein | - |
| SER39006_RS20060 () | 4406531..4407376 | - | 846 | WP_021014761.1 | hypothetical protein | - |
| SER39006_RS20065 () | 4407475..4408686 | - | 1212 | WP_084297598.1 | hypothetical protein | VF |
| SER39006_RS20070 () | 4408690..4409370 | - | 681 | WP_021014759.1 | hypothetical protein | VF |
| SER39006_RS20075 () | 4409367..4409843 | - | 477 | WP_021014758.1 | hypothetical protein | VF |
| SER39006_RS20080 () | 4409850..4410440 | - | 591 | WP_021014757.1 | hypothetical protein | VF |
| SER39006_RS20085 () | 4410451..4411569 | - | 1119 | WP_037380658.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| SER39006_RS20090 () | 4411562..4413130 | - | 1569 | WP_021014755.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| SER39006_RS20095 () | 4413144..4413656 | - | 513 | WP_021014754.1 | hypothetical protein | VF |
| SER39006_RS20100 () | 4413643..4414935 | - | 1293 | WP_021014753.1 | hypothetical protein | VF |
| SER39006_RS20105 () | 4414938..4416626 | - | 1689 | WP_051391487.1 | Outer membrane lipoprotein BfpB | VF |
| SER39006_RS20110 () | 4416644..4417081 | - | 438 | WP_021014751.1 | hypothetical protein | VF |
| SER39006_RS20115 () | 4417081..4418280 | - | 1200 | WP_021014750.1 | hypothetical protein | VF |
| SER39006_RS20120 () | 4418484..4418915 | - | 432 | WP_021014749.1 | DUF29 domain-containing protein | - |
| SER39006_RS20125 () | 4419147..4419689 | - | 543 | WP_021014748.1 | single-stranded DNA-binding protein | - |
| SER39006_RS20130 () | 4419767..4420267 | - | 501 | WP_021014747.1 | DUF3577 domain-containing protein | - |
| SER39006_RS20135 () | 4420896..4422908 | - | 2013 | WP_021014746.1 | DNA topoisomerase III | - |
| SER39006_RS20140 () | 4422918..4423658 | - | 741 | WP_021014745.1 | TIGR03761 family integrating conjugative element protein | - |
| SER39006_RS20145 () | 4423679..4424113 | - | 435 | WP_101377520.1 | hypothetical protein | - |
| SER39006_RS20150 () | 4424117..4425373 | - | 1257 | WP_021014744.1 | helix-turn-helix domain-containing protein | - |
| SER39006_RS20155 () | 4425480..4425713 | - | 234 | WP_021014743.1 | hypothetical protein | - |
| SER39006_RS20160 () | 4425710..4426291 | - | 582 | WP_037380654.1 | DUF2857 domain-containing protein | - |
| SER39006_RS20165 () | 4426383..4427138 | - | 756 | WP_021014740.1 | DUF2786 domain-containing protein | - |
| SER39006_RS20170 () | 4427125..4427373 | - | 249 | WP_021014739.1 | TraR/DksA C4-type zinc finger protein | - |
| SER39006_RS20175 () | 4427363..4429087 | - | 1725 | WP_021014738.1 | ParB family protein | - |
| SER39006_RS20180 () | 4429087..4430460 | - | 1374 | WP_021014737.1 | replicative DNA helicase | - |
| SER39006_RS20185 () | 4430457..4431332 | - | 876 | WP_021014736.1 | Tyrosine-protein kinase CpsD | VF |
| SER39006_RS20190 () | 4431624..4431998 | + | 375 | Protein_3899 | DUF4102 domain-containing protein | - |
| SER39006_RS20205 () | 4433047..4434000 | - | 954 | WP_021014734.1 | HTH-type transcriptional regulator DmlR | VF |
| SER39006_RS20210 () | 4434197..4435356 | + | 1160 | Protein_3901 | iron-containing alcohol dehydrogenase | - |
| SER39006_RS20215 () | 4435416..4435721 | + | 306 | WP_021014732.1 | DUF1330 domain-containing protein | - |
| SER39006_RS20220 () | 4435761..4436309 | + | 549 | WP_021014731.1 | NAD(P)H-dependent oxidoreductase | - |
| SER39006_RS20225 () | 4436500..4437636 | + | 1137 | WP_021014730.1 | MBL fold metallo-hydrolase | - |
| SER39006_RS20230 () | 4437814..4437981 | - | 168 | WP_084297624.1 | hypothetical protein | - |
| SER39006_RS20240 () | 4438440..4438838 | - | 399 | WP_021014728.1 | cupin domain-containing protein | - |
| SER39006_RS20245 () | 4438869..4440017 | - | 1149 | WP_021014727.1 | iron-containing alcohol dehydrogenase | - |
| SER39006_RS20250 () | 4440222..4440569 | - | 348 | WP_037381254.1 | hypothetical protein | - |
| SER39006_RS20255 () | 4440721..4441749 | - | 1029 | WP_021014725.1 | alpha/beta hydrolase | - |
| SER39006_RS20260 () | 4441760..4442956 | - | 1197 | WP_021014724.1 | MFS transporter | - |
| SER39006_RS20265 () | 4443195..4444082 | + | 888 | WP_021014723.1 | HTH-type transcriptional regulator PgrR | VF |
| SER39006_RS20270 () | 4444233..4445231 | - | 999 | Protein_3912 | Fic family protein | - |
| SER39006_RS20280 () | 4445316..4446335 | + | 1020 | WP_021014721.1 | IS630 family transposase ISPeat1 | Transposase |
| SER39006_RS23075 () | 4446563..4446811 | - | 249 | WP_037380644.1 | hypothetical protein | - |
| SER39006_RS20290 () | 4446810..4447028 | + | 219 | WP_021014718.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| SER39006_RS20295 () | 4447031..4447336 | + | 306 | WP_021014717.1 | type II toxin-antitoxin system toxin CcdB | - |
| SER39006_RS20300 () | 4447805..4448530 | + | 726 | WP_021014716.1 | SDR family oxidoreductase | - |
| SER39006_RS20305 () | 4448626..4450232 | - | 1607 | Protein_3918 | hybrid sensor histidine kinase/response regulator | - |
| SER39006_RS20310 () | 4450229..4450732 | - | 504 | Protein_3919 | oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|