MGE detailed information
MGE type: Prophage MGE length: 90815 bp
Accession: NZ_CP024473 Location: 2615155..2705969 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Accession: NZ_CP024473 Location: 2615155..2705969 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS12865 (2610450) | 2610450..2610713 | + | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| CPZ98_RS12870 (2610814) | 2610814..2611455 | + | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| CPZ98_RS12875 (2611714) | 2611714..2612667 | + | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| CPZ98_RS12880 (2612876) | 2612876..2613841 | + | 966 | WP_000042632.1 | lipoyl synthase | - |
| CPZ98_RS12885 (2613942) | 2613942..2614145 | - | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| CPZ98_RS12890 (2614274) | 2614274..2615062 | - | 789 | WP_005049482.1 | deaminated glutathione amidase | - |
| CPZ98_RS12895 (2615155) | 2615155..2615538 | + | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| CPZ98_RS12900 (2615591) | 2615591..2615800 | - | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| CPZ98_RS12905 (2615975) | 2615975..2616535 | - | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| CPZ98_RS12910 (2617123) | 2617123..2618508 | + | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| CPZ98_RS12915 (2618549) | 2618549..2618890 | - | 342 | Protein_2481 | response regulator | - |
| CPZ98_RS12920 (2619228) | 2619228..2619737 | - | 510 | WP_000833599.1 | DNA-binding protein | - |
| CPZ98_RS12925 (2619909) | 2619909..2620145 | + | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| CPZ98_RS12930 (2620120) | 2620120..2621751 | + | 1632 | Protein_2484 | transposase domain-containing protein | - |
| CPZ98_RS12935 (2621816) | 2621816..2622972 | + | 1157 | WP_094081558.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS25945 (2622984) | 2622984..2623259 | + | 276 | WP_011069283.1 | hypothetical protein | - |
| CPZ98_RS12945 (2623256) | 2623256..2624197 | - | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| CPZ98_RS12950 (2624209) | 2624209..2624698 | - | 490 | Protein_2488 | hypothetical protein | - |
| CPZ98_RS12955 (2624702) | 2624702..2625922 | - | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| CPZ98_RS12960 (2625926) | 2625926..2626669 | - | 744 | WP_000184977.1 | phage minor head protein | - |
| CPZ98_RS12965 (2626560) | 2626560..2628026 | - | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| CPZ98_RS12970 (2628026) | 2628026..2628759 | - | 734 | Protein_2492 | PBSX family phage terminase large subunit | - |
| CPZ98_RS12980 (2630547) | 2630547..2631395 | + | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| CPZ98_RS12985 (2631412) | 2631412..2631693 | + | 282 | WP_001069001.1 | YdaE family protein | - |
| CPZ98_RS26395 (2631729) | 2631729..2631845 | + | 117 | Protein_2496 | hypothetical protein | - |
| CPZ98_RS12990 (2631909) | 2631909..2633038 | + | 1130 | WP_130862224.1 | IS3-like element ISSfl10 family transposase | - |
| CPZ98_RS12995 (2633081) | 2633081..2633509 | - | 429 | Protein_2498 | exonuclease VIII | - |
| CPZ98_RS13000 (2633587) | 2633587..2634755 | + | 1169 | WP_128599161.1 | IS3-like element IS911 family transposase | - |
| CPZ98_RS13005 (2634765) | 2634765..2634959 | - | 195 | Protein_2500 | hypothetical protein | - |
| CPZ98_RS13010 (2635059) | 2635059..2635291 | - | 233 | Protein_2501 | hypothetical protein | - |
| CPZ98_RS13020 (2636524) | 2636524..2637141 | + | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| CPZ98_RS13030 (2637321) | 2637321..2639147 | - | 1827 | WP_011110560.1 | IpaH family type III secretion system E3 ubiquitin--protein ligase | - |
| CPZ98_RS13035 (2639638) | 2639638..2639727 | + | 90 | Protein_2505 | DNA invertase | - |
| CPZ98_RS13040 (2640029) | 2640029..2641024 | + | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| CPZ98_RS13045 (2641065) | 2641065..2642018 | - | 954 | Protein_2507 | LysR family transcriptional regulator | - |
| CPZ98_RS13050 (2642202) | 2642202..2643254 | + | 1053 | WP_000723619.1 | 4-oxalomesaconate tautomerase | - |
| CPZ98_RS13055 (2643330) | 2643330..2644763 | + | 1434 | WP_001036462.1 | anion permease | - |
| CPZ98_RS13060 (2644946) | 2644946..2647126 | + | 2181 | WP_000593952.1 | hydratase | - |
| CPZ98_RS13065 (2647267) | 2647267..2648550 | - | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| CPZ98_RS13070 (2648685) | 2648685..2649626 | - | 942 | Protein_2512 | tyrosine-type recombinase/integrase | - |
| CPZ98_RS13080 (2650861) | 2650861..2650989 | + | 129 | Protein_2514 | phage holin | - |
| CPZ98_RS13085 (2650989) | 2650989..2651093 | + | 105 | Protein_2515 | lysozyme | - |
| CPZ98_RS13090 (2651166) | 2651166..2652334 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| CPZ98_RS13095 (2652340) | 2652340..2652588 | + | 249 | Protein_2517 | lysis system i-spanin subunit Rz | - |
| CPZ98_RS13100 (2652677) | 2652677..2653189 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| CPZ98_RS13105 (2653384) | 2653384..2654079 | + | 696 | WP_001108105.1 | hypothetical protein | - |
| CPZ98_RS26405 (2655326) | 2655326..2655400 | + | 75 | Protein_2521 | hypothetical protein | - |
| CPZ98_RS13115 (2655411) | 2655411..2656019 | + | 609 | Protein_2522 | PBSX family phage terminase large subunit | - |
| CPZ98_RS13120 (2656110) | 2656110..2657338 | + | 1229 | WP_094081542.1 | IS3-like element IS2 family transposase | - |
| CPZ98_RS13130 (2657580) | 2657580..2657783 | - | 204 | WP_001005968.1 | hypothetical protein | - |
| CPZ98_RS13135 (2657785) | 2657785..2657940 | - | 156 | WP_001091985.1 | DUF1391 family protein | - |
| CPZ98_RS13140 (2658143) | 2658143..2658550 | - | 408 | WP_000787424.1 | helix-turn-helix domain-containing protein | - |
| CPZ98_RS13145 (2658627) | 2658627..2658854 | + | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| CPZ98_RS13150 (2658838) | 2658838..2659260 | + | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| CPZ98_RS13155 (2659338) | 2659338..2659982 | + | 645 | WP_005061591.1 | hypothetical protein | - |
| CPZ98_RS13160 (2660128) | 2660128..2660874 | + | 747 | Protein_2530 | ATP-binding protein | - |
| CPZ98_RS13165 (2660889) | 2660889..2661311 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| CPZ98_RS13170 (2661369) | 2661369..2661725 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| CPZ98_RS13175 (2661894) | 2661894..2662559 | + | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| CPZ98_RS13180 (2662787) | 2662787..2662942 | + | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| CPZ98_RS13185 (2663192) | 2663192..2663479 | + | 288 | WP_000687442.1 | hypothetical protein | - |
| CPZ98_RS13190 (2663518) | 2663518..2663886 | + | 369 | Protein_2536 | DUF1367 family protein | - |
| CPZ98_RS13200 (2665151) | 2665151..2665384 | + | 234 | Protein_2538 | DUF1367 family protein | - |
| CPZ98_RS13205 (2665384) | 2665384..2665674 | + | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| CPZ98_RS13210 (2665671) | 2665671..2665781 | + | 111 | Protein_2540 | DUF1133 family protein | - |
| CPZ98_RS13215 (2665858) | 2665858..2667026 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| CPZ98_RS13220 (2667051) | 2667051..2667461 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| CPZ98_RS13225 (2667458) | 2667458..2667634 | + | 177 | WP_001252556.1 | NinE family protein | - |
| CPZ98_RS13230 (2667676) | 2667676..2667984 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| CPZ98_RS13235 (2667974) | 2667974..2668204 | - | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CPZ98_RS13240 (2668217) | 2668217..2668675 | + | 459 | WP_000961311.1 | ash family protein | - |
| CPZ98_RS13245 (2668733) | 2668733..2669185 | + | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| CPZ98_RS13250 (2669182) | 2669182..2669415 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| CPZ98_RS13255 (2669402) | 2669402..2670310 | + | 909 | WP_001247840.1 | hypothetical protein | - |
| CPZ98_RS13260 (2670321) | 2670321..2671199 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| CPZ98_RS13265 (2671196) | 2671196..2672587 | + | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| CPZ98_RS13270 (2672584) | 2672584..2672841 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| CPZ98_RS13275 (2672936) | 2672936..2673136 | + | 201 | WP_000111769.1 | protein ninH | - |
| CPZ98_RS13280 (2673129) | 2673129..2673509 | + | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| CPZ98_RS13305 (2674312) | 2674312..2674527 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| CPZ98_RS13310 (2674531) | 2674531..2675160 | + | 630 | WP_005094817.1 | hypothetical protein | - |
| CPZ98_RS13315 (2675226) | 2675226..2675759 | + | 534 | WP_001274722.1 | lysozyme | - |
| CPZ98_RS25960 (2675756) | 2675756..2676223 | + | 468 | WP_000092287.1 | lysis protein | - |
| CPZ98_RS13325 (2676426) | 2676426..2676605 | + | 180 | Protein_2559 | Rha family transcriptional regulator | - |
| CPZ98_RS13330 (2676649) | 2676649..2677655 | - | 1007 | Protein_2560 | IS3-like element ISSfl10 family transposase | - |
| CPZ98_RS13335 (2677707) | 2677707..2678916 | - | 1210 | Protein_2561 | IS3 family transposase | - |
| CPZ98_RS13340 (2678972) | 2678972..2680011 | + | 1040 | Protein_2562 | IS3-like element IS600 family transposase | - |
| CPZ98_RS13345 (2680054) | 2680054..2680362 | + | 309 | Protein_2563 | terminase small subunit | - |
| CPZ98_RS13350 (2680334) | 2680334..2682262 | + | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| CPZ98_RS13355 (2682246) | 2682246..2682449 | + | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| CPZ98_RS13360 (2682446) | 2682446..2684039 | + | 1594 | Protein_2566 | phage portal protein | - |
| CPZ98_RS13365 (2684029) | 2684029..2685534 | + | 1506 | WP_001254016.1 | S49 family peptidase | - |
| CPZ98_RS13370 (2685571) | 2685571..2685918 | + | 348 | WP_000256830.1 | head decoration protein | - |
| CPZ98_RS13375 (2685976) | 2685976..2687004 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| CPZ98_RS13380 (2687056) | 2687056..2687442 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| CPZ98_RS13385 (2687454) | 2687454..2687831 | + | 378 | WP_000348593.1 | head-tail joining protein | - |
| CPZ98_RS13390 (2687818) | 2687818..2688402 | + | 585 | WP_000677140.1 | phage tail protein | - |
| CPZ98_RS13395 (2688399) | 2688399..2688800 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| CPZ98_RS13400 (2688811) | 2688811..2689551 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| CPZ98_RS13405 (2689610) | 2689610..2689996 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| CPZ98_RS13410 (2690005) | 2690005..2690334 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| CPZ98_RS13415 (2690306) | 2690306..2693044 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| CPZ98_RS13420 (2693044) | 2693044..2693373 | + | 330 | WP_000447264.1 | phage tail protein | - |
| CPZ98_RS13425 (2693373) | 2693373..2694071 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| CPZ98_RS13430 (2694076) | 2694076..2694819 | + | 744 | WP_075332705.1 | C40 family peptidase | - |
| CPZ98_RS13435 (2694783) | 2694783..2695358 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| CPZ98_RS13440 (2695419) | 2695419..2698899 | + | 3481 | Protein_2582 | host specificity protein J | - |
| CPZ98_RS13445 (2698967) | 2698967..2699566 | + | 600 | WP_001230368.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| CPZ98_RS13450 (2699630) | 2699630..2701045 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CPZ98_RS13455 (2700996) | 2700996..2701619 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| CPZ98_RS13465 (2701799) | 2701799..2703562 | - | 1764 | WP_000801162.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| CPZ98_RS13470 (2703654) | 2703654..2703740 | + | 87 | Protein_2587 | transposase | - |
| CPZ98_RS13475 (2703750) | 2703750..2703830 | - | 81 | Protein_2588 | hypothetical protein | - |
| CPZ98_RS13480 (2704145) | 2704145..2704621 | - | 477 | WP_000767391.1 | kinase inhibitor | - |
| CPZ98_RS13485 (2704680) | 2704680..2705969 | - | 1290 | WP_005048541.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
| CPZ98_RS13490 (2706056) | 2706056..2707096 | + | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| CPZ98_RS13495 (2707093) | 2707093..2708247 | + | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| CPZ98_RS13500 (2708234) | 2708234..2708989 | + | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| CPZ98_RS13505 (2708982) | 2708982..2709659 | + | 678 | WP_000044868.1 | dethiobiotin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|