MGE detailed information
MGE type: Conjugative plasmid MGE length: 122641 bp
Accession: NZ_CP023164 Location: 1..122641 Organism: Escherichia coli O22:H8 strain RM10809-3 Replicon: plasmid pRM10809-3
Accession: NZ_CP023164 Location: 1..122641 Organism: Escherichia coli O22:H8 strain RM10809-3 Replicon: plasmid pRM10809-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLC88_RS00005 () | 283..1086 | - | 804 | WP_000899428.1 | Outer membrane protein A | VF |
| CLC88_RS00010 () | 1111..5436 | - | 4326 | WP_050864263.1 | Autotransporter adhesin SadA | VF |
| CLC88_RS00015 () | 5572..5859 | - | 288 | WP_050864264.1 | Major pilu subunit operon regulatory protein PapB | VF |
| CLC88_RS25565 () | 5801..6052 | + | 252 | WP_196497610.1 | hypothetical protein | - |
| CLC88_RS00020 () | 6676..8232 | + | 1557 | WP_050864262.1 | L-lactate permease | - |
| CLC88_RS00025 () | 8282..9001 | + | 720 | WP_044804124.1 | (Fe-S)-binding protein | - |
| CLC88_RS00030 () | 9012..10427 | + | 1416 | WP_000054160.1 | iron-sulfur cluster-binding protein | - |
| CLC88_RS00035 () | 10432..11130 | + | 699 | WP_000431492.1 | lactate utilization protein C | - |
| CLC88_RS00040 () | 11171..11407 | - | 237 | WP_001369996.1 | hypothetical protein | - |
| CLC88_RS00045 () | 11475..11939 | - | 465 | WP_077629759.1 | IS3 family transposase ISKpn8 | Transposase |
| CLC88_RS00050 () | 12055..12366 | - | 312 | WP_000204186.1 | hypothetical protein | - |
| CLC88_RS00055 () | 12394..12585 | - | 192 | WP_000264906.1 | hypothetical protein | - |
| CLC88_RS00060 () | 12595..12960 | - | 366 | WP_000997727.1 | hypothetical protein | - |
| CLC88_RS00065 () | 13094..13303 | + | 210 | WP_062896385.1 | hypothetical protein | - |
| CLC88_RS00070 () | 13466..17367 | - | 3902 | Protein_14 | Serine protease EspP | VF |
| CLC88_RS00075 () | 17864..18250 | - | 387 | WP_000598953.1 | thermonuclease family protein | - |
| CLC88_RS00080 () | 18409..19086 | + | 678 | WP_001158025.1 | hypothetical protein | - |
| CLC88_RS00085 () | 19576..19896 | - | 321 | WP_000220092.1 | hypothetical protein | - |
| CLC88_RS00090 () | 19954..21116 | - | 1163 | Protein_18 | IS3-like element IS3 family transposase | - |
| CLC88_RS25570 () | 21183..21272 | - | 90 | Protein_19 | transposase | - |
| CLC88_RS00095 () | 21526..22908 | + | 1383 | WP_136744503.1 | autoagglutinating adhesin Saa | - |
| CLC88_RS00100 () | 23174..23323 | + | 150 | WP_000539306.1 | hypothetical protein | - |
| CLC88_RS00105 () | 23406..24521 | + | 1116 | Protein_22 | IS3 family transposase | - |
| CLC88_RS00110 () | 24829..26916 | + | 2088 | WP_001223214.1 | bifunctional siderophore receptor/adhesin Iha | - |
| CLC88_RS00115 () | 27177..27599 | - | 423 | WP_001212725.1 | Exc2 family lipoprotein | - |
| CLC88_RS00120 () | 27934..28116 | - | 183 | Protein_25 | IS110 family transposase | - |
| CLC88_RS00125 () | 28178..28366 | + | 189 | Protein_26 | IS66 family transposase IS682 | Transposase |
| CLC88_RS00130 () | 28420..28614 | - | 195 | Protein_27 | IS66 family transposase ISEc23 | Transposase |
| CLC88_RS00135 () | 29113..29301 | - | 189 | WP_196497611.1 | hypothetical protein | - |
| CLC88_RS00140 () | 29921..38734 | - | 8814 | Protein_29 | tRNA nuclease CdiA | VF |
| CLC88_RS00145 () | 38747..40513 | - | 1767 | WP_050864233.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| CLC88_RS00150 () | 41128..41367 | - | 240 | WP_000859018.1 | MarR family transcriptional regulator | - |
| CLC88_RS00155 () | 42343..43200 | - | 858 | WP_028985401.1 | incFII family plasmid replication initiator RepA | - |
| CLC88_RS00160 () | 43193..43267 | - | 75 | WP_062865987.1 | RepA leader peptide Tap | - |
| CLC88_RS00165 () | 43503..43760 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| CLC88_RS00170 () | 44044..44250 | - | 207 | WP_032186826.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 44237..44298 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 44237..44298 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 44237..44298 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 44237..44298 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| CLC88_RS25575 () | 44473..44856 | - | 384 | Protein_36 | hypothetical protein | - |
| CLC88_RS00180 () | 44959..45418 | - | 460 | Protein_37 | thermonuclease family protein | - |
| CLC88_RS00185 () | 46161..46364 | - | 204 | WP_032295436.1 | hypothetical protein | - |
| CLC88_RS00190 () | 46519..47076 | - | 558 | WP_028985402.1 | fertility inhibition protein FinO | - |
| CLC88_RS00195 () | 47131..47877 | - | 747 | WP_044804172.1 | Multifunctional conjugation protein TraI | Relaxase |
| CLC88_RS00205 () | 47897..53164 | - | 5268 | Protein_41 | Multifunctional conjugation protein TraI | Relaxase |
| CLC88_RS00210 () | 53164..55369 | - | 2206 | Protein_42 | type IV conjugative transfer system coupling protein TraD | - |
| CLC88_RS00215 () | 55651..56130 | - | 480 | WP_001473214.1 | hypothetical protein | - |
| CLC88_RS00220 () | 56333..57064 | - | 732 | WP_050878060.1 | complement resistance protein TraT | - |
| CLC88_RS00225 () | 57577..60421 | - | 2845 | Protein_45 | conjugal transfer mating pair stabilization protein TraG | - |
| CLC88_RS00230 () | 60418..61791 | - | 1374 | Protein_46 | conjugal transfer protein TraH | - |
| CLC88_RS00235 () | 61778..62494 | - | 717 | Protein_47 | P-type conjugative transfer protein TrbJ | - |
| CLC88_RS00240 () | 62424..62969 | - | 546 | WP_001457363.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CLC88_RS00245 () | 62956..63246 | - | 291 | WP_021521297.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CLC88_RS00250 () | 63642..63983 | - | 342 | WP_000556797.1 | conjugal transfer protein TrbA | - |
| CLC88_RS00255 () | 63997..64740 | - | 744 | WP_001030373.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CLC88_RS00260 () | 64733..64990 | - | 258 | WP_050878058.1 | conjugal transfer protein TrbE | - |
| CLC88_RS00265 () | 65004..66838 | - | 1835 | Protein_53 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CLC88_RS00270 () | 66998..67378 | - | 381 | WP_032206670.1 | hypothetical protein | - |
| CLC88_RS00275 () | 67375..68013 | - | 639 | WP_032305012.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CLC88_RS00280 () | 68205..68444 | + | 240 | WP_001066128.1 | hypothetical protein | - |
| CLC88_RS00285 () | 68441..68620 | - | 180 | WP_000970212.1 | hypothetical protein | - |
| CLC88_RS00290 () | 68641..69633 | - | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| CLC88_RS00295 () | 69630..70262 | - | 633 | WP_001203739.1 | type-F conjugative transfer system protein TraW | - |
| CLC88_RS00300 () | 70259..70645 | - | 387 | WP_000214090.1 | type-F conjugative transfer system protein TrbI | - |
| CLC88_RS00305 () | 70642..73271 | - | 2630 | Protein_61 | type IV secretion system protein TraC | - |
| CLC88_RS00310 () | 73395..73742 | - | 348 | WP_052918901.1 | hypothetical protein | - |
| CLC88_RS00315 () | 74068..74541 | - | 474 | WP_000549599.1 | hypothetical protein | - |
| CLC88_RS00320 () | 74552..74947 | - | 396 | WP_000549593.1 | hypothetical protein | - |
| CLC88_RS00325 () | 74940..75161 | - | 222 | WP_001278977.1 | conjugal transfer protein TraR | - |
| CLC88_RS00330 () | 75296..75809 | - | 514 | Protein_66 | type IV conjugative transfer system lipoprotein TraV | - |
| CLC88_RS00335 () | 75806..76056 | - | 251 | Protein_67 | conjugal transfer protein TrbG | - |
| CLC88_RS00340 () | 76170..76400 | - | 231 | WP_155704887.1 | conjugal transfer protein TrbD | - |
| CLC88_RS00345 () | 76354..76940 | - | 587 | Protein_69 | conjugal transfer protein TraP | - |
| CLC88_RS00350 () | 76930..78359 | - | 1430 | Protein_70 | conjugal transfer protein TraB | - |
| CLC88_RS00355 () | 78359..79087 | - | 729 | WP_001365587.1 | type-F conjugative transfer system secretin TraK | - |
| CLC88_RS00360 () | 79074..79640 | - | 567 | WP_000399759.1 | type IV conjugative transfer system protein TraE | - |
| CLC88_RS00365 () | 79662..79972 | - | 311 | Protein_73 | type IV conjugative transfer system protein TraL | - |
| CLC88_RS00370 () | 79987..80364 | - | 378 | WP_155704889.1 | type IV conjugative transfer system pilin TraA | - |
| CLC88_RS00375 () | 80391..80601 | - | 211 | Protein_75 | conjugal transfer relaxosome protein TraY | - |
| CLC88_RS00380 () | 81560..81931 | - | 372 | Protein_76 | relaxosome protein TraM | - |
| CLC88_RS00385 () | 82248..82850 | + | 603 | WP_077698133.1 | hypothetical protein | VF |
| CLC88_RS25580 () | 83146..83957 | - | 812 | Protein_78 | DUF945 domain-containing protein | - |
| CLC88_RS25585 () | 84071..84342 | - | 272 | Protein_79 | hypothetical protein | - |
| CLC88_RS00400 () | 84511..84812 | - | 302 | Protein_80 | hypothetical protein | - |
| CLC88_RS25590 () | 85105..85394 | + | 290 | Protein_81 | hypothetical protein | - |
| CLC88_RS00410 () | 85688..85849 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 85907..86099 | - | 193 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85907..86099 | - | 193 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85907..86099 | - | 193 | NuclAT_0 | - | Antitoxin Detail |
| - () | 85907..86099 | - | 193 | NuclAT_0 | - | Antitoxin Detail |
| CLC88_RS00415 () | 86048..86361 | - | 314 | Protein_83 | theronine dehydrogenase | - |
| CLC88_RS00420 () | 86303..87068 | - | 766 | Protein_84 | plasmid SOS inhibition protein A | - |
| CLC88_RS00425 () | 87070..87496 | - | 427 | Protein_85 | conjugation system SOS inhibitor PsiB | - |
| CLC88_RS00430 () | 87551..89509 | - | 1959 | WP_050864290.1 | ParB/RepB/Spo0J family partition protein | - |
| CLC88_RS00435 () | 89573..89806 | - | 234 | WP_000005988.1 | DUF905 family protein | - |
| CLC88_RS00440 () | 89864..90384 | - | 521 | Protein_88 | single-stranded DNA-binding protein | - |
| CLC88_RS00450 () | 90727..91233 | + | 507 | WP_148723668.1 | hypothetical protein | - |
| CLC88_RS00455 () | 91214..91777 | - | 564 | WP_050864291.1 | class I SAM-dependent methyltransferase | - |
| CLC88_RS00460 () | 91823..93184 | - | 1362 | WP_000175497.1 | DUF3560 domain-containing protein | - |
| CLC88_RS00465 () | 93236..93465 | - | 230 | Protein_92 | hypothetical protein | - |
| CLC88_RS25595 () | 94141..94449 | + | 309 | WP_071830340.1 | pilus assembly protein | - |
| CLC88_RS00475 () | 94428..94619 | - | 192 | WP_001027048.1 | hypothetical protein | - |
| CLC88_RS00480 () | 94619..95038 | - | 420 | WP_000271710.1 | DUF1380 family protein | - |
| CLC88_RS00485 () | 95085..95387 | - | 303 | WP_001364029.1 | antirestriction protein | - |
| CLC88_RS00495 () | 95926..96697 | - | 772 | Protein_97 | hypothetical protein | - |
| CLC88_RS00500 () | 96747..97181 | - | 435 | WP_000274460.1 | DUF1380 family protein | - |
| CLC88_RS00505 () | 97195..97415 | - | 221 | Protein_99 | hypothetical protein | - |
| CLC88_RS00510 () | 97416..98068 | - | 653 | Protein_100 | DNA methylase | - |
| CLC88_RS00515 () | 98648..100347 | + | 1700 | Protein_101 | group II intron reverse transcriptase/maturase | - |
| CLC88_RS00520 () | 100591..100880 | - | 290 | Protein_102 | hypothetical protein | - |
| CLC88_RS00525 () | 100877..101775 | - | 899 | Protein_103 | DUF1281 domain-containing protein | - |
| CLC88_RS00530 () | 102194..102442 | + | 249 | WP_000618108.1 | DinI-like family protein | - |
| CLC88_RS00535 () | 102439..102876 | + | 438 | WP_000109074.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CLC88_RS00540 () | 102876..104146 | + | 1271 | Protein_106 | translesion error-prone DNA polymerase V subunit UmuC | - |
| CLC88_RS00550 () | 104151..104543 | - | 393 | WP_000340836.1 | plasmid partitioning/stability family protein | - |
| CLC88_RS00555 () | 104548..105519 | - | 972 | WP_001103695.1 | hypothetical protein | - |
| CLC88_RS00560 () | 105748..106392 | + | 645 | WP_000633912.1 | AAA family ATPase | - |
| CLC88_RS00565 () | 106386..106661 | + | 276 | WP_000239527.1 | hypothetical protein | - |
| CLC88_RS00570 () | 106799..107608 | - | 810 | WP_000016958.1 | site-specific integrase | - |
| CLC88_RS00575 () | 107609..107914 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CLC88_RS00580 () | 107916..108134 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| CLC88_RS00585 () | 108730..108990 | + | 261 | WP_000343084.1 | hypothetical protein | - |
| CLC88_RS00590 () | 108987..109577 | + | 591 | WP_000194564.1 | hypothetical protein | - |
| CLC88_RS00595 () | 109595..109941 | - | 347 | Protein_116 | hypothetical protein | - |
| CLC88_RS00600 () | 110125..110403 | + | 279 | WP_001365566.1 | hypothetical protein | - |
| CLC88_RS00605 () | 110410..110745 | - | 336 | Protein_118 | colicin | - |
| CLC88_RS00610 () | 110840..111570 | - | 731 | Protein_119 | complement resistance protein TraT | - |
| CLC88_RS25600 () | 111847..111957 | - | 111 | Protein_120 | IS481 family transposase | - |
| CLC88_RS00615 () | 112741..113718 | + | 978 | WP_050864229.1 | RepB family plasmid replication initiator protein | - |
| CLC88_RS00620 () | 113957..114239 | - | 283 | Protein_122 | ISL3 family transposase ISEc53 | Transposase |
| CLC88_RS00625 () | 114396..114626 | - | 231 | WP_032279745.1 | hypothetical protein | - |
| CLC88_RS00630 () | 114756..115250 | - | 495 | WP_050864230.1 | Transcriptional repressor MprA | VF |
| CLC88_RS00635 () | 115371..116810 | - | 1440 | WP_021293303.1 | Hemolysin secretion protein D, chromosomal | VF |
| CLC88_RS00640 () | 116814..118934 | - | 2121 | WP_072094473.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| CLC88_RS00645 () | 118984..121980 | - | 2997 | WP_000217728.1 | Hemolysin, chromosomal | VF |
| CLC88_RS00650 () | 121982..122496 | - | 515 | Protein_128 | RTX-I toxin-activating lysine-acyltransferase ApxIC | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|