MGE detailed information
MGE type: Conjugative plasmid MGE length: 78672 bp
Accession: NZ_CP021843 Location: 1..78672 Organism: Escherichia coli strain EC974 Replicon: plasmid pEC974-3
Accession: NZ_CP021843 Location: 1..78672 Organism: Escherichia coli strain EC974 Replicon: plasmid pEC974-3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH88_RS27480 () | 1796..2448 | + | 653 | Protein_2 | CPBP family intramembrane metalloprotease | - |
| CDH88_RS28385 () | 2541..2798 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CDH88_RS27485 () | 2731..3132 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CDH88_RS27490 () | 3417..5189 | + | 1773 | WP_001262767.1 | DUF262 domain-containing protein | - |
| CDH88_RS27495 () | 5679..6539 | - | 861 | WP_000027057.1 | class A broad-spectrum beta-lactamase TEM-1 | - |
| CDH88_RS27500 () | 6740..7437 | - | 698 | Protein_7 | IS1 family transposase | - |
| CDH88_RS27510 () | 7516..8213 | - | 698 | Protein_8 | IS1 family transposase | - |
| CDH88_RS27515 () | 8275..8832 | - | 558 | WP_001235713.1 | recombinase family protein | - |
| CDH88_RS28390 () | 8996..9136 | + | 141 | WP_020219413.1 | hypothetical protein | - |
| CDH88_RS27530 () | 9254..9958 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CDH88_RS27535 () | 10011..10808 | - | 798 | Protein_12 | class 1 integron integrase IntI1 | - |
| CDH88_RS27540 () | 10957..11748 | + | 792 | WP_032491824.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22 | - |
| CDH88_RS27545 () | 11880..12701 | + | 822 | WP_000939727.1 | lincosamide nucleotidyltransferase Lnu(F) | - |
| CDH88_RS27550 () | 12854..13558 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CDH88_RS27555 () | 13631..13870 | + | 240 | WP_011264039.1 | macrolide transporter | - |
| CDH88_RS27560 () | 14016..14879 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| CDH88_RS27565 () | 14917..15162 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| CDH88_RS27575 () | 15631..16422 | + | 792 | WP_000034420.1 | sulfonamide-resistant dihydropteroate synthase Sul3 | - |
| CDH88_RS28585 () | 16425..16700 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| CDH88_RS27580 () | 16702..17337 | + | 636 | Protein_21 | transposase | - |
| CDH88_RS27590 () | 17602..17934 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| CDH88_RS27595 () | 18104..18895 | - | 792 | WP_001206316.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | - |
| CDH88_RS27600 () | 18984..19826 | - | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| CDH88_RS27610 () | 20291..20797 | - | 507 | Protein_25 | IS91-like element ISVsa3 family transposase | - |
| CDH88_RS27615 () | 20862..21566 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CDH88_RS27620 () | 21619..24477 | + | 2859 | Protein_27 | Tn3-like element Tn3 family transposase | - |
| CDH88_RS27630 () | 24793..25098 | + | 306 | WP_001152000.1 | hypothetical protein | - |
| CDH88_RS27635 () | 25109..25343 | + | 235 | Protein_29 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CDH88_RS27640 () | 25471..25752 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| CDH88_RS27645 () | 25873..26223 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| CDH88_RS27650 () | 26226..27188 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| CDH88_RS27655 () | 27337..27630 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| CDH88_RS27665 () | 27707..28390 | + | 684 | WP_000085884.1 | DNA methylase | - |
| CDH88_RS27670 () | 28391..28612 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| CDH88_RS27675 () | 28626..29060 | + | 435 | WP_000274465.1 | DUF1380 family protein | - |
| CDH88_RS28590 () | 29105..29875 | + | 771 | WP_044257554.1 | hypothetical protein | - |
| CDH88_RS27690 () | 30414..30716 | + | 303 | WP_077636047.1 | antirestriction protein | - |
| CDH88_RS27695 () | 30763..31182 | + | 420 | WP_044257555.1 | DUF1380 family protein | - |
| CDH88_RS27700 () | 31182..31373 | + | 192 | WP_001493747.1 | hypothetical protein | - |
| CDH88_RS27715 () | 32407..32637 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CDH88_RS27720 () | 32689..34050 | + | 1362 | WP_000170713.1 | DUF3560 domain-containing protein | - |
| CDH88_RS27725 () | 34096..34659 | + | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| CDH88_RS27755 () | 35538..36119 | + | 582 | WP_088172508.1 | single-stranded DNA-binding protein | - |
| CDH88_RS27760 () | 36122..36355 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| CDH88_RS27765 () | 36414..38378 | + | 1965 | WP_079976098.1 | ParB/RepB/Spo0J family partition protein | - |
| CDH88_RS27770 () | 38447..38881 | + | 435 | WP_000845894.1 | conjugation system SOS inhibitor PsiB | - |
| CDH88_RS27775 () | 38878..39597 | + | 720 | WP_000116352.1 | plasmid SOS inhibition protein A | - |
| CDH88_RS28395 () | 39609..39797 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 39609..39833 | + | 225 | NuclAT_0 | - | - |
| - () | 39609..39833 | + | 225 | NuclAT_0 | - | - |
| - () | 39609..39833 | + | 225 | NuclAT_0 | - | - |
| - () | 39609..39833 | + | 225 | NuclAT_0 | - | - |
| - () | 39766..39831 | + | 66 | - | - | Antitoxin Detail |
| CDH88_RS27780 () | 39877..40035 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CDH88_RS28400 () | 40330..40641 | + | 312 | WP_198320073.1 | hypothetical protein | - |
| CDH88_RS28595 () | 40882..41088 | + | 207 | WP_000547971.1 | hypothetical protein | - |
| CDH88_RS27795 () | 41113..41400 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| CDH88_RS27800 () | 41519..42340 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CDH88_RS27805 () | 42637..43284 | - | 648 | WP_157698281.1 | transglycosylase SLT domain-containing protein | - |
| CDH88_RS27810 () | 43561..43944 | + | 384 | WP_000124979.1 | relaxosome protein TraM | - |
| CDH88_RS27815 () | 44135..44821 | + | 687 | WP_000332493.1 | PAS domain-containing protein | - |
| CDH88_RS27820 () | 44915..45142 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| CDH88_RS27825 () | 45176..45538 | + | 363 | WP_000340279.1 | type IV conjugative transfer system pilin TraA | - |
| CDH88_RS27830 () | 45543..45854 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CDH88_RS27835 () | 45876..46442 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| CDH88_RS27840 () | 46453..47157 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| CDH88_RS27845 () | 47157..48584 | + | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| CDH88_RS27850 () | 48574..49146 | + | 573 | WP_000002780.1 | conjugal transfer protein TraP | - |
| CDH88_RS27855 () | 49143..49460 | + | 318 | WP_001057292.1 | conjugal transfer protein TrbD | - |
| CDH88_RS27860 () | 49457..49708 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| CDH88_RS27865 () | 49705..50220 | + | 516 | WP_039021963.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CDH88_RS27870 () | 50355..50576 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| CDH88_RS27875 () | 50736..53365 | + | 2630 | Protein_69 | type IV secretion system protein TraC | - |
| CDH88_RS27880 () | 53362..53748 | + | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| CDH88_RS27885 () | 53745..54377 | + | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| CDH88_RS27890 () | 54374..55366 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| CDH88_RS27895 () | 55392..55853 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| CDH88_RS27900 () | 55883..56335 | + | 453 | WP_039021965.1 | hypothetical protein | - |
| CDH88_RS27905 () | 56363..57001 | + | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CDH88_RS27910 () | 56998..58806 | + | 1809 | WP_000821818.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CDH88_RS27915 () | 58833..59090 | + | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| CDH88_RS27920 () | 59083..59826 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CDH88_RS27925 () | 59842..60189 | + | 348 | WP_001287902.1 | conjugal transfer protein TrbA | - |
| CDH88_RS27930 () | 60308..60592 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CDH88_RS27935 () | 60579..61123 | + | 545 | Protein_81 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CDH88_RS27940 () | 61053..61415 | + | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| CDH88_RS27945 () | 61415..62788 | + | 1374 | WP_001137358.1 | conjugal transfer protein TraH | - |
| CDH88_RS27950 () | 62785..65610 | + | 2826 | WP_001493899.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CDH88_RS27955 () | 65607..66116 | + | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| CDH88_RS27960 () | 66130..66861 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| CDH88_RS27965 () | 67113..69293 | + | 2181 | WP_001493790.1 | type IV conjugative transfer system coupling protein TraD | - |
| CDH88_RS27970 () | 69293..74563 | + | 5271 | WP_088172509.1 | conjugative transfer relaxase/helicase TraI | - |
| CDH88_RS27975 () | 74583..75329 | + | 747 | WP_001825166.1 | conjugal transfer pilus acetylase TraX | - |
| CDH88_RS27980 () | 75384..75944 | + | 561 | WP_000139345.1 | fertility inhibition protein FinO | - |
| CDH88_RS27985 () | 76075..76287 | + | 213 | WP_001311693.1 | hypothetical protein | - |
| CDH88_RS27990 () | 76529..76990 | + | 462 | WP_001233868.1 | thermonuclease family protein | - |
| CDH88_RS27995 () | 77036..77244 | + | 209 | Protein_93 | hemolysin expression modulator Hha | - |
| CDH88_RS28000 () | 77283..77873 | + | 591 | WP_000766814.1 | DUF2726 domain-containing protein | - |
| CDH88_RS28005 () | 78113..78367 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|