MGE detailed information
MGE type: Genomic_island MGE length: 106900 bp
Accession: NZ_CP021840 Location: 2590089..2696988 Organism: Escherichia coli strain EC974 Replicon: chromosome
Accession: NZ_CP021840 Location: 2590089..2696988 Organism: Escherichia coli strain EC974 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH88_RS12855 () | 2585961..2586428 | + | 468 | WP_000725257.1 | flagellar basal body-associated FliL family protein | - |
| CDH88_RS12860 () | 2586448..2587164 | + | 717 | WP_088172323.1 | FliA/WhiG family RNA polymerase sigma factor | - |
| CDH88_RS12865 () | 2587177..2588040 | + | 864 | WP_001169518.1 | flagellar motor stator protein MotA | - |
| CDH88_RS12870 () | 2588043..2588966 | + | 924 | WP_021553260.1 | putative lateral flagellar export/assembly protein LafU | - |
| CDH88_RS12875 () | 2589037..2590092 | + | 1056 | WP_001226161.1 | DNA polymerase IV | - |
| CDH88_RS12880 () | 2590089..2590541 | + | 453 | WP_021576988.1 | GNAT family N-acetyltransferase | - |
| CDH88_RS12885 () | 2590787..2590990 | + | 204 | Protein_2364 | RNA ligase RtcB family protein | - |
| CDH88_RS12890 () | 2590989..2591510 | + | 522 | Protein_2365 | peptide chain release factor H | - |
| CDH88_RS12895 () | 2591567..2593024 | - | 1458 | WP_001293010.1 | cytosol nonspecific dipeptidase | - |
| CDH88_RS12900 () | 2593285..2593743 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| CDH88_RS12905 () | 2593835..2595079 | + | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 2594339..2594419 | + | 81 | NuclAT_11 | - | - |
| - () | 2594339..2594419 | + | 81 | NuclAT_11 | - | - |
| - () | 2594339..2594419 | + | 81 | NuclAT_11 | - | - |
| - () | 2594339..2594419 | + | 81 | NuclAT_11 | - | - |
| CDH88_RS12910 () | 2595137..2595538 | + | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| CDH88_RS12915 () | 2595577..2596632 | - | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| CDH88_RS12920 () | 2596919..2598022 | + | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| CDH88_RS12925 () | 2598034..2599287 | + | 1254 | WP_021576990.1 | glutamate-5-semialdehyde dehydrogenase | - |
| CDH88_RS12935 () | 2599788..2600384 | + | 597 | WP_047643993.1 | hypothetical protein | - |
| CDH88_RS12940 () | 2600471..2602108 | - | 1638 | WP_039025855.1 | hypothetical protein | - |
| CDH88_RS12945 () | 2602800..2603027 | + | 228 | WP_039022145.1 | AlpA family phage regulatory protein | - |
| CDH88_RS12950 () | 2603133..2603360 | + | 228 | WP_000120392.1 | DUF3987 domain-containing protein | - |
| CDH88_RS12955 () | 2603609..2605042 | + | 1434 | WP_000335694.1 | DUF3987 domain-containing protein | - |
| CDH88_RS12960 () | 2605929..2606522 | + | 594 | WP_039025854.1 | inovirus-type Gp2 protein | - |
| CDH88_RS12970 () | 2606894..2607277 | + | 384 | WP_000270989.1 | hypothetical protein | - |
| CDH88_RS12975 () | 2607274..2607699 | + | 426 | WP_001013334.1 | hypothetical protein | - |
| CDH88_RS12985 () | 2608472..2610529 | + | 2058 | WP_039025853.1 | AAA family ATPase | - |
| CDH88_RS12990 () | 2610522..2611808 | + | 1287 | WP_000005572.1 | McrC family protein | - |
| CDH88_RS12995 () | 2612200..2612613 | - | 414 | Protein_2383 | transposase | - |
| CDH88_RS13000 () | 2612679..2613841 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| CDH88_RS13005 () | 2614117..2614509 | - | 393 | WP_000560765.1 | hypothetical protein | - |
| CDH88_RS13015 () | 2614929..2615626 | + | 698 | Protein_2386 | IS1 family transposase IS1R | Transposase |
| CDH88_RS13020 () | 2615794..2616585 | - | 792 | WP_001682441.1 | hypothetical protein | ARG |
| CDH88_RS13025 () | 2616734..2617747 | + | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| CDH88_RS13040 () | 2618297..2619001 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CDH88_RS13045 () | 2619062..2620756 | + | 1695 | Protein_2390 | Tn3 family transposase ISKox2 | Transposase |
| CDH88_RS13050 () | 2620809..2620916 | - | 108 | WP_077248882.1 | hypothetical protein | - |
| CDH88_RS13055 () | 2621014..2622933 | - | 1920 | WP_000691727.1 | Peptide chain release factor 3 | VF |
| CDH88_RS13060 () | 2622949..2623065 | - | 117 | WP_001791010.1 | tetracycline resistance determinant leader peptide | - |
| CDH88_RS13065 () | 2623310..2623633 | - | 324 | Protein_2394 | conjugal transfer protein | - |
| CDH88_RS13070 () | 2623668..2624165 | - | 498 | Protein_2395 | Tn3 family transposase ISEc63 | Transposase |
| CDH88_RS13080 () | 2624231..2624935 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CDH88_RS13090 () | 2624987..2625175 | + | 189 | Protein_2397 | helix-turn-helix domain-containing protein | - |
| CDH88_RS13095 () | 2625358..2626218 | + | 861 | WP_000027057.1 | hypothetical protein | ARG |
| CDH88_RS13100 () | 2626428..2627921 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| CDH88_RS13110 () | 2628386..2629228 | + | 843 | WP_001456218.1 | alpha/beta fold putative hydrolase EstX | - |
| CDH88_RS13115 () | 2629317..2630108 | + | 792 | WP_001682441.1 | hypothetical protein | ARG |
| CDH88_RS13120 () | 2630276..2630973 | - | 698 | Protein_2402 | IS1 family transposase IS1S | Transposase |
| CDH88_RS13125 () | 2631029..2631145 | - | 117 | Protein_2403 | restriction endonuclease subunit S | - |
| CDH88_RS13130 () | 2631142..2632698 | - | 1557 | WP_039025962.1 | type I restriction-modification system subunit M | - |
| CDH88_RS13135 () | 2632962..2633834 | + | 873 | WP_039025961.1 | GTPase family protein | - |
| CDH88_RS13140 () | 2634207..2637053 | + | 2847 | WP_088172325.1 | Ag43/Cah family autotransporter adhesin | - |
| CDH88_RS13150 () | 2637392..2638210 | + | 819 | WP_001598214.1 | DUF945 domain-containing protein | - |
| CDH88_RS13155 () | 2638302..2638787 | + | 486 | WP_001563926.1 | antirestriction protein | - |
| CDH88_RS13160 () | 2638803..2639279 | + | 477 | WP_001186774.1 | RadC family protein | - |
| CDH88_RS13165 () | 2639342..2639563 | + | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| CDH88_RS13170 () | 2639771..2640517 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CDH88_RS13175 () | 2640532..2642073 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| CDH88_RS13180 () | 2642254..2642808 | + | 555 | WP_088172326.1 | antitoxin of toxin-antitoxin stability system | - |
| CDH88_RS13185 () | 2642858..2643226 | + | 369 | WP_039025882.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| CDH88_RS13190 () | 2643315..2643692 | + | 378 | WP_039025883.1 | type IV toxin-antitoxin system toxin CbtA | Toxin Detail |
| CDH88_RS13195 () | 2643689..2644177 | + | 489 | Protein_2416 | hypothetical protein | - |
| CDH88_RS13200 () | 2644197..2644394 | + | 198 | WP_000772024.1 | DUF957 domain-containing protein | - |
| CDH88_RS13205 () | 2644491..2645339 | + | 849 | WP_039025884.1 | DUF4942 domain-containing protein | - |
| CDH88_RS13210 () | 2645432..2646751 | - | 1320 | WP_000144688.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CDH88_RS13215 () | 2647089..2647988 | - | 900 | WP_021577017.1 | HTH-type transcriptional regulator ArgP | VF |
| CDH88_RS13220 () | 2648087..2648809 | + | 723 | WP_021577018.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| CDH88_RS13225 () | 2648973..2649248 | + | 276 | WP_024248231.1 | hypothetical protein | - |
| CDH88_RS13235 () | 2649950..2650834 | - | 885 | WP_001119037.1 | HTH-type transcriptional regulator ArgP | VF |
| CDH88_RS13240 () | 2651099..2652157 | + | 1059 | WP_021577020.1 | alpha/beta hydrolase | - |
| CDH88_RS13245 () | 2652299..2653426 | + | 1128 | WP_023307640.1 | MFS transporter | - |
| CDH88_RS13250 () | 2653605..2654561 | - | 957 | WP_088172327.1 | molybdenum cofactor insertion chaperone PaoD | - |
| CDH88_RS13255 () | 2654571..2656769 | - | 2199 | Protein_2427 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| CDH88_RS13260 () | 2656766..2657722 | - | 957 | WP_000643325.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| CDH88_RS13265 () | 2657719..2658408 | - | 690 | WP_021577024.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| CDH88_RS28155 () | 2658570..2658779 | + | 210 | WP_021577025.1 | hypothetical protein | - |
| CDH88_RS13275 () | 2658826..2659439 | + | 614 | Protein_2431 | YagU family protein | - |
| CDH88_RS13280 () | 2659686..2660015 | - | 330 | WP_001307600.1 | YkgJ family cysteine cluster protein | - |
| CDH88_RS13285 () | 2660328..2661038 | - | 711 | WP_021556513.1 | hypothetical protein | VF |
| CDH88_RS13290 () | 2661007..2662650 | - | 1644 | WP_021577026.1 | hypothetical protein | VF |
| CDH88_RS13295 () | 2662640..2665165 | - | 2526 | WP_021577027.1 | hypothetical protein | VF |
| CDH88_RS13300 () | 2665191..2665859 | - | 669 | WP_021577028.1 | hypothetical protein | VF |
| CDH88_RS13305 () | 2665917..2666504 | - | 588 | WP_000730974.1 | hypothetical protein | VF |
| CDH88_RS13310 () | 2666579..2667121 | - | 543 | WP_001296902.1 | hypothetical protein | VF |
| CDH88_RS13320 () | 2668003..2668169 | + | 167 | Protein_2439 | hypothetical protein | - |
| CDH88_RS13325 () | 2668204..2668344 | - | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| CDH88_RS13330 () | 2668344..2668607 | - | 264 | WP_024248236.1 | type B 50S ribosomal protein L31 | - |
| CDH88_RS13340 () | 2668970..2669071 | - | 102 | WP_000662258.1 | hypothetical protein | - |
| CDH88_RS13345 () | 2669545..2670687 | - | 1143 | WP_021577031.1 | NADH-dependent flavin oxidoreductase | - |
| CDH88_RS13350 () | 2670932..2671852 | - | 921 | WP_000860023.1 | alpha/beta hydrolase | - |
| CDH88_RS13355 () | 2672009..2672935 | + | 927 | WP_001307603.1 | HTH-type transcriptional regulator ArgP | VF |
| CDH88_RS13360 () | 2673136..2674029 | + | 894 | WP_000910718.1 | HTH-type transcriptional regulator ArgP | VF |
| CDH88_RS13365 () | 2674061..2675050 | - | 990 | WP_001172290.1 | aldo/keto reductase | - |
| CDH88_RS13370 () | 2675077..2675928 | - | 852 | WP_021577033.1 | aldo/keto reductase | - |
| CDH88_RS13375 () | 2676493..2680746 | + | 4254 | WP_080030308.1 | hypothetical protein | VF |
| CDH88_RS13380 () | 2680867..2681724 | - | 858 | WP_021577035.1 | HTH-type transcriptional activator RhaR | VF |
| CDH88_RS13385 () | 2681972..2682841 | + | 870 | WP_021556518.1 | aldo/keto reductase | - |
| CDH88_RS13390 () | 2683001..2683594 | - | 594 | WP_021577036.1 | reactive chlorine species resistance protein RclC | - |
| CDH88_RS13395 () | 2683606..2683842 | - | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| CDH88_RS13400 () | 2683951..2685276 | - | 1326 | WP_021577037.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| CDH88_RS13405 () | 2685502..2686356 | + | 855 | WP_000339588.1 | DNA-binding transcriptional regulator RclR | - |
| CDH88_RS13410 () | 2686884..2687603 | + | 720 | WP_021577038.1 | (Fe-S)-binding protein | - |
| CDH88_RS13415 () | 2687614..2689041 | + | 1428 | WP_021577039.1 | iron-sulfur cluster-binding protein | - |
| CDH88_RS13420 () | 2689034..2689729 | + | 696 | WP_021577040.1 | lactate utilization protein C | - |
| CDH88_RS13435 () | 2689972..2690640 | - | 669 | WP_021577041.1 | hypothetical protein | - |
| CDH88_RS13440 () | 2690822..2692015 | - | 1194 | WP_088172493.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CDH88_RS13445 () | 2692238..2693290 | - | 1053 | Protein_2461 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| CDH88_RS13450 () | 2693332..2694093 | - | 762 | WP_001213049.1 | protein HyxA | - |
| CDH88_RS13455 () | 2694247..2695041 | - | 795 | WP_021577043.1 | LuxR family transcriptional regulator HyxR | - |
| CDH88_RS13460 () | 2695371..2695934 | - | 564 | WP_001362381.1 | Tyrosine recombinase XerD | VF |
| CDH88_RS28160 () | 2696179..2696313 | + | 135 | WP_157698275.1 | hypothetical protein | - |
| CDH88_RS13475 () | 2696990..2698678 | - | 1689 | WP_021577044.1 | choline dehydrogenase | - |
| CDH88_RS13480 () | 2698692..2700164 | - | 1473 | WP_021577045.1 | betaine-aldehyde dehydrogenase | - |
| CDH88_RS13485 () | 2700178..2700765 | - | 588 | WP_001301903.1 | transcriptional regulator BetI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|