MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 170276 bp
Accession: NZ_CP021431 Location: 652..170927 Organism: Yoonia vestfoldensis strain SMR4r Replicon: chromosome
Accession: NZ_CP021431 Location: 652..170927 Organism: Yoonia vestfoldensis strain SMR4r Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LOKVESSMR4R_RS00010 () | 936..1340 | + | 405 | WP_087205590.1 | TrbC/VirB2 family protein | - |
LOKVESSMR4R_RS00015 () | 1538..2455 | + | 918 | WP_157898071.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
LOKVESSMR4R_RS00020 () | 2467..4866 | + | 2400 | WP_087205593.1 | hypothetical protein | - |
LOKVESSMR4R_RS20380 () | 4853..5677 | + | 825 | WP_162290716.1 | hypothetical protein | - |
LOKVESSMR4R_RS00025 () | 5674..6861 | + | 1188 | WP_162290717.1 | type IV secretion system protein | - |
LOKVESSMR4R_RS00030 () | 6854..7519 | + | 666 | WP_087205596.1 | hypothetical protein | - |
LOKVESSMR4R_RS00035 () | 7519..8217 | + | 699 | WP_087205598.1 | hypothetical protein | - |
LOKVESSMR4R_RS00040 () | 8217..10001 | + | 1785 | WP_087205600.1 | DUF1524 domain-containing protein | - |
LOKVESSMR4R_RS00045 () | 9989..11362 | + | 1374 | WP_087205602.1 | hypothetical protein | - |
LOKVESSMR4R_RS19960 () | 11359..12048 | + | 690 | WP_157898072.1 | hypothetical protein | - |
LOKVESSMR4R_RS00055 () | 12067..12285 | + | 219 | WP_087205606.1 | hypothetical protein | - |
LOKVESSMR4R_RS00060 () | 12329..13495 | + | 1167 | WP_087205607.1 | hypothetical protein | - |
LOKVESSMR4R_RS00065 () | 13492..13905 | + | 414 | WP_157898073.1 | hypothetical protein | - |
LOKVESSMR4R_RS00070 () | 13898..15109 | + | 1212 | WP_087205610.1 | DUF1173 family protein | - |
LOKVESSMR4R_RS00075 () | 15109..15531 | + | 423 | WP_087205612.1 | hypothetical protein | - |
LOKVESSMR4R_RS00080 () | 15715..17538 | + | 1824 | WP_157898074.1 | type IV secretory system conjugative DNA transfer family protein | - |
LOKVESSMR4R_RS00085 () | 17616..17897 | + | 282 | WP_087205616.1 | hypothetical protein | - |
LOKVESSMR4R_RS00090 () | 17894..18253 | + | 360 | WP_087205617.1 | winged helix-turn-helix transcriptional regulator | - |
LOKVESSMR4R_RS00095 () | 18285..27476 | - | 9192 | WP_157898075.1 | AAA family ATPase | - |
LOKVESSMR4R_RS00100 () | 27487..28095 | - | 609 | WP_087205621.1 | MobA/MobL family protein | - |
LOKVESSMR4R_RS00105 () | 29107..29793 | + | 687 | WP_157898076.1 | ParA family protein | - |
LOKVESSMR4R_RS00110 () | 29813..30160 | + | 348 | WP_087205625.1 | hypothetical protein | - |
LOKVESSMR4R_RS00115 () | 30153..31652 | + | 1500 | WP_157898077.1 | hypothetical protein | - |
LOKVESSMR4R_RS00120 () | 31652..31855 | + | 204 | WP_087205629.1 | hypothetical protein | - |
LOKVESSMR4R_RS00125 () | 31919..32404 | - | 486 | WP_087205631.1 | hypothetical protein | - |
LOKVESSMR4R_RS19965 () | 32576..32746 | - | 171 | WP_157898078.1 | hypothetical protein | - |
LOKVESSMR4R_RS19970 () | 33635..33838 | - | 204 | WP_157898079.1 | hypothetical protein | - |
LOKVESSMR4R_RS00135 () | 34668..35621 | - | 954 | WP_087205635.1 | DUF2493 domain-containing protein | - |
LOKVESSMR4R_RS00140 () | 36305..36484 | - | 180 | WP_157898080.1 | hypothetical protein | - |
LOKVESSMR4R_RS00145 () | 36567..36962 | - | 396 | WP_087205637.1 | hypothetical protein | - |
LOKVESSMR4R_RS00150 () | 37076..37390 | - | 315 | WP_157898081.1 | DUF736 family protein | - |
LOKVESSMR4R_RS00155 () | 37561..38142 | - | 582 | WP_157898082.1 | hypothetical protein | - |
LOKVESSMR4R_RS00160 () | 38132..38482 | - | 351 | WP_087205643.1 | DUF2958 domain-containing protein | - |
LOKVESSMR4R_RS00165 () | 38598..39242 | - | 645 | WP_087205644.1 | antitoxin of toxin-antitoxin stability system | - |
LOKVESSMR4R_RS00170 () | 39235..39654 | - | 420 | WP_087205646.1 | hypothetical protein | - |
LOKVESSMR4R_RS00175 () | 39758..40060 | - | 303 | WP_087205647.1 | hypothetical protein | - |
LOKVESSMR4R_RS00180 () | 40220..40588 | + | 369 | WP_087212268.1 | Flagellar secretion chaperone FliS | VF |
LOKVESSMR4R_RS00185 () | 40715..41122 | - | 408 | WP_087205648.1 | hypothetical protein | - |
LOKVESSMR4R_RS00190 () | 41122..41397 | - | 276 | WP_157898083.1 | hypothetical protein | - |
LOKVESSMR4R_RS00195 () | 41498..42415 | - | 918 | WP_087205651.1 | DUF1738 domain-containing protein | - |
LOKVESSMR4R_RS00200 () | 42532..42891 | - | 360 | WP_087205654.1 | hypothetical protein | - |
LOKVESSMR4R_RS19975 () | 42888..43067 | - | 180 | WP_157898084.1 | hypothetical protein | - |
LOKVESSMR4R_RS00205 () | 43064..43390 | - | 327 | WP_157898085.1 | hypothetical protein | - |
LOKVESSMR4R_RS00210 () | 43520..47911 | - | 4392 | WP_087205657.1 | strawberry notch family protein | - |
LOKVESSMR4R_RS00215 () | 48052..48339 | + | 288 | WP_087205659.1 | integration host factor subunit beta | - |
LOKVESSMR4R_RS00220 () | 48399..49217 | - | 819 | WP_087205661.1 | hypothetical protein | - |
LOKVESSMR4R_RS00225 () | 49442..50104 | - | 663 | WP_087205663.1 | hypothetical protein | - |
LOKVESSMR4R_RS00230 () | 50360..50794 | + | 435 | WP_087205664.1 | peptidase S24 | - |
LOKVESSMR4R_RS00235 () | 50791..52062 | + | 1272 | WP_087205666.1 | Y-family DNA polymerase | - |
LOKVESSMR4R_RS00240 () | 52206..52904 | - | 699 | WP_087205668.1 | hypothetical protein | - |
LOKVESSMR4R_RS19980 () | 52934..53173 | - | 240 | WP_157898086.1 | hypothetical protein | - |
LOKVESSMR4R_RS00245 () | 53184..54359 | - | 1176 | WP_087205670.1 | IS5 family transposase ISPha2 | Transposase |
LOKVESSMR4R_RS00250 () | 54808..56817 | - | 2010 | WP_087205672.1 | ParB/RepB/Spo0J family partition protein | - |
LOKVESSMR4R_RS00255 () | 57011..57319 | + | 309 | WP_087205673.1 | hypothetical protein | - |
LOKVESSMR4R_RS00260 () | 57625..58497 | + | 873 | WP_012187142.1 | Tyrosine recombinase XerD | VF |
LOKVESSMR4R_RS00265 () | 58510..59712 | + | 1203 | WP_012187141.1 | IS91 family transposase ISMno24 | Transposase |
LOKVESSMR4R_RS00270 () | 60411..61520 | - | 1110 | WP_087212271.1 | aminodeoxychorismate synthase component I | - |
LOKVESSMR4R_RS00275 () | 61541..61834 | - | 294 | WP_087212272.1 | Dabb family protein | - |
LOKVESSMR4R_RS00280 () | 62019..62978 | - | 960 | WP_087205675.1 | Biotin synthase | VF |
LOKVESSMR4R_RS00285 () | 62983..63540 | - | 558 | WP_087205676.1 | biotin transporter BioY | - |
LOKVESSMR4R_RS00290 () | 63629..64228 | - | 600 | WP_087205678.1 | GntR family transcriptional regulator | - |
LOKVESSMR4R_RS00295 () | 64366..65223 | - | 858 | WP_087205681.1 | pantoate--beta-alanine ligase | - |
LOKVESSMR4R_RS00300 () | 65220..66047 | - | 828 | WP_087205683.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
LOKVESSMR4R_RS00305 () | 66287..66916 | - | 630 | Protein_64 | hypothetical protein ; Integrase | Integrase |
LOKVESSMR4R_RS00310 () | 67297..67587 | + | 291 | WP_087205685.1 | ATP-binding cassette domain-containing protein | - |
LOKVESSMR4R_RS00315 () | 67829..69631 | + | 1803 | WP_087205687.1 | phosphomethylpyrimidine synthase ThiC | - |
LOKVESSMR4R_RS00320 () | 69628..70596 | + | 969 | WP_087205689.1 | FAD-dependent oxidoreductase | - |
LOKVESSMR4R_RS00325 () | 70565..70762 | + | 198 | WP_087205692.1 | sulfur carrier protein ThiS | - |
LOKVESSMR4R_RS00330 () | 70764..71531 | + | 768 | WP_087205694.1 | thiazole synthase | - |
LOKVESSMR4R_RS00335 () | 71531..72124 | + | 594 | WP_087212275.1 | thiamine phosphate synthase | - |
LOKVESSMR4R_RS00340 () | 72121..73089 | + | 969 | WP_087205696.1 | ThiF family adenylyltransferase | - |
LOKVESSMR4R_RS00345 () | 73086..73814 | + | 729 | WP_087205698.1 | hydroxymethylpyrimidine/phosphomethylpyrimidine kinase | - |
LOKVESSMR4R_RS00350 () | 74116..74796 | + | 681 | WP_087205701.1 | 5,6-dimethylbenzimidazole synthase | - |
LOKVESSMR4R_RS00355 () | 74804..75271 | - | 468 | WP_087205703.1 | preQ(1) synthase | - |
LOKVESSMR4R_RS00360 () | 75287..76006 | - | 720 | WP_087205705.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
LOKVESSMR4R_RS00365 () | 76003..76359 | - | 357 | WP_087205707.1 | 6-carboxytetrahydropterin synthase QueD | - |
LOKVESSMR4R_RS00370 () | 76359..77057 | - | 699 | WP_087205709.1 | 7-cyano-7-deazaguanine synthase QueC | - |
LOKVESSMR4R_RS00375 () | 77346..77978 | - | 633 | WP_087212278.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
LOKVESSMR4R_RS00380 () | 78289..79053 | + | 765 | WP_087205710.1 | Putative ketoacyl reductase | VF |
LOKVESSMR4R_RS00385 () | 79025..81826 | - | 2802 | WP_087205713.1 | AMP-binding protein | - |
LOKVESSMR4R_RS00390 () | 82208..83056 | - | 849 | WP_087205715.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
LOKVESSMR4R_RS00395 () | 83053..84618 | - | 1566 | WP_087205717.1 | L-aspartate oxidase | - |
LOKVESSMR4R_RS00400 () | 84624..85673 | - | 1050 | WP_087205719.1 | quinolinate synthase NadA | - |
LOKVESSMR4R_RS00405 () | 85869..86099 | - | 231 | WP_087205721.1 | hypothetical protein | - |
LOKVESSMR4R_RS00410 () | 86098..86985 | + | 888 | WP_087205722.1 | Tyrosine recombinase XerC | VF |
LOKVESSMR4R_RS00415 () | 86996..87313 | + | 318 | Protein_86 | transposase zinc-binding domain-containing protein | - |
LOKVESSMR4R_RS00420 () | 87638..88087 | - | 450 | WP_087205724.1 | DUF411 domain-containing protein | - |
LOKVESSMR4R_RS00425 () | 88128..89519 | - | 1392 | WP_087205726.1 | multicopper oxidase family protein | - |
LOKVESSMR4R_RS00430 () | 89516..90466 | - | 951 | WP_087205728.1 | CopD family protein | - |
LOKVESSMR4R_RS00435 () | 90473..90832 | - | 360 | WP_087205730.1 | copper resistance protein CopC | - |
LOKVESSMR4R_RS00440 () | 90902..91246 | - | 345 | WP_087205731.1 | copper-binding protein | - |
LOKVESSMR4R_RS00445 () | 91284..94463 | - | 3180 | WP_087205733.1 | efflux RND transporter permease subunit | - |
LOKVESSMR4R_RS00450 () | 94460..96670 | - | 2211 | WP_087205735.1 | efflux RND transporter periplasmic adaptor subunit | - |
LOKVESSMR4R_RS00460 () | 97403..97879 | + | 477 | WP_087205740.1 | DUF305 domain-containing protein | - |
LOKVESSMR4R_RS00465 () | 97939..100386 | + | 2448 | WP_087212281.1 | heavy metal translocating P-type ATPase | - |
LOKVESSMR4R_RS00470 () | 100428..100847 | + | 420 | WP_087205742.1 | cytochrome c | - |
LOKVESSMR4R_RS00475 () | 100888..101493 | - | 606 | WP_157898087.1 | Crp/Fnr family transcriptional regulator | - |
LOKVESSMR4R_RS00480 () | 101561..102121 | + | 561 | WP_157898088.1 | hypothetical protein | - |
LOKVESSMR4R_RS00490 () | 103545..104819 | - | 1275 | WP_087205750.1 | MFS transporter | - |
LOKVESSMR4R_RS00495 () | 104829..105107 | - | 279 | WP_087205752.1 | metal-sensing transcriptional repressor | - |
LOKVESSMR4R_RS00500 () | 105171..105530 | + | 360 | WP_157898089.1 | hypothetical protein | - |
LOKVESSMR4R_RS00505 () | 105585..106322 | + | 738 | WP_087205756.1 | HupE/UreJ family protein | - |
LOKVESSMR4R_RS00510 () | 106338..106952 | + | 615 | WP_087205757.1 | transmembrane anchor protein | - |
LOKVESSMR4R_RS00515 () | 107372..108403 | + | 1032 | WP_087205760.1 | IS110 family transposase ISRhru3 | Transposase |
LOKVESSMR4R_RS00520 () | 108829..111123 | + | 2295 | Protein_106 | strawberry notch family protein | - |
LOKVESSMR4R_RS00525 () | 111173..112407 | + | 1235 | WP_087205762.1 | IS3 family transposase ISMex33 | Transposase |
LOKVESSMR4R_RS00530 () | 112411..112668 | + | 258 | WP_157898090.1 | hypothetical protein | - |
LOKVESSMR4R_RS00535 () | 112791..114317 | + | 1527 | WP_087205766.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
LOKVESSMR4R_RS00540 () | 114314..115225 | + | 912 | WP_087205768.1 | Tn3 family transposase TnBth2 | Transposase |
LOKVESSMR4R_RS00545 () | 115222..116226 | + | 1005 | WP_087205770.1 | Tyrosine recombinase XerD | VF |
LOKVESSMR4R_RS00550 () | 116267..118708 | - | 2442 | WP_087212283.1 | DEAD/DEAH box helicase | - |
LOKVESSMR4R_RS00555 () | 118952..120736 | + | 1785 | Protein_113 | strawberry notch C-terminal domain-containing protein | - |
LOKVESSMR4R_RS00560 () | 120863..121249 | + | 387 | WP_087212286.1 | hypothetical protein | - |
LOKVESSMR4R_RS00565 () | 121251..121708 | + | 458 | Protein_115 | hypothetical protein | - |
LOKVESSMR4R_RS00570 () | 121809..122111 | + | 303 | WP_087205774.1 | hypothetical protein | - |
LOKVESSMR4R_RS00575 () | 122236..122964 | + | 729 | WP_087205775.1 | DUF736 family protein | - |
LOKVESSMR4R_RS00580 () | 123480..124649 | + | 1170 | WP_087212290.1 | MerR family transcriptional regulator | - |
LOKVESSMR4R_RS00585 () | 124717..125166 | + | 450 | WP_087212295.1 | GNAT family N-acetyltransferase | - |
LOKVESSMR4R_RS00595 () | 126590..127666 | + | 1077 | WP_087205777.1 | ribosome small subunit-dependent GTPase A | - |
LOKVESSMR4R_RS00600 () | 128107..128562 | - | 456 | WP_087212298.1 | hypothetical protein | - |
LOKVESSMR4R_RS00605 () | 128565..128984 | - | 420 | WP_087205779.1 | hypothetical protein | - |
LOKVESSMR4R_RS00610 () | 129161..129661 | + | 501 | WP_157898091.1 | hypothetical protein | - |
LOKVESSMR4R_RS00615 () | 129823..130086 | + | 264 | WP_087205783.1 | BrnT family toxin | Toxin Detail |
LOKVESSMR4R_RS00620 () | 130073..130288 | + | 216 | WP_066009074.1 | CopG family transcriptional regulator | Antitoxin Detail |
LOKVESSMR4R_RS00625 () | 130388..132028 | + | 1641 | WP_087205784.1 | hypothetical protein | - |
LOKVESSMR4R_RS00630 () | 131983..133584 | + | 1602 | WP_157898092.1 | Eco57I restriction-modification methylase domain-containing protein | - |
LOKVESSMR4R_RS00635 () | 133697..134446 | + | 750 | WP_157898093.1 | hypothetical protein | - |
LOKVESSMR4R_RS00640 () | 134751..135005 | + | 255 | WP_087205790.1 | type II toxin-antitoxin system HicA family toxin | - |
LOKVESSMR4R_RS00645 () | 135002..135346 | + | 345 | WP_087205792.1 | type II toxin-antitoxin system HicB family antitoxin | - |
LOKVESSMR4R_RS19985 () | 135393..135734 | - | 342 | WP_157898094.1 | hypothetical protein | - |
LOKVESSMR4R_RS00650 () | 135727..136404 | - | 678 | WP_087205794.1 | Protein virC1 | VF |
LOKVESSMR4R_RS00655 () | 136891..137601 | + | 711 | WP_087212131.1 | GDP-L-fucose synthase | VF |
LOKVESSMR4R_RS00660 () | 137623..138537 | - | 915 | Protein_135 | GDP-L-fucose synthase | VF |
LOKVESSMR4R_RS00665 () | 138542..139663 | - | 1122 | WP_087205796.1 | GDP-mannose 4,6-dehydratase | VF |
LOKVESSMR4R_RS00670 () | 139806..140561 | + | 756 | WP_087205798.1 | DUF2793 domain-containing protein | - |
LOKVESSMR4R_RS00675 () | 140866..141426 | + | 561 | WP_204248702.1 | F0F1 ATP synthase subunit delta | - |
LOKVESSMR4R_RS00680 () | 141426..142961 | + | 1536 | WP_087205800.1 | ATP synthase subunit alpha | VF |
LOKVESSMR4R_RS00685 () | 142985..143857 | + | 873 | WP_087205802.1 | F0F1 ATP synthase subunit gamma | - |
LOKVESSMR4R_RS00690 () | 143876..145300 | + | 1425 | WP_087205804.1 | ATP synthase subunit beta | VF |
LOKVESSMR4R_RS00695 () | 145313..145750 | + | 438 | WP_087205806.1 | F0F1 ATP synthase subunit epsilon | - |
LOKVESSMR4R_RS00700 () | 145811..146821 | - | 1011 | WP_204248750.1 | ribose-phosphate diphosphokinase | - |
LOKVESSMR4R_RS00705 () | 146946..147542 | + | 597 | WP_087205810.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
LOKVESSMR4R_RS00710 () | 147542..148303 | + | 762 | WP_087205811.1 | alpha/beta hydrolase | - |
LOKVESSMR4R_RS00715 () | 148272..149318 | - | 1047 | WP_087205813.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
LOKVESSMR4R_RS00720 () | 149319..149789 | - | 471 | WP_087205815.1 | YcgN family cysteine cluster protein | - |
LOKVESSMR4R_RS00725 () | 149779..150720 | - | 942 | WP_087205817.1 | bifunctional riboflavin kinase/FAD synthetase | - |
LOKVESSMR4R_RS00730 () | 150757..151200 | - | 444 | WP_087205820.1 | MaoC family dehydratase | - |
LOKVESSMR4R_RS00735 () | 151286..152161 | - | 876 | WP_087205823.1 | TIGR01459 family HAD-type hydrolase | - |
LOKVESSMR4R_RS00740 () | 152171..153088 | - | 918 | WP_162290718.1 | manganese-dependent inorganic pyrophosphatase | - |
LOKVESSMR4R_RS00745 () | 153182..153886 | + | 705 | WP_087205826.1 | hypothetical protein | - |
LOKVESSMR4R_RS00750 () | 153892..154881 | - | 990 | WP_087205828.1 | TraB/GumN family protein | - |
LOKVESSMR4R_RS00755 () | 154962..155942 | - | 981 | WP_087205829.1 | hypothetical protein | - |
LOKVESSMR4R_RS00765 () | 156290..156952 | + | 663 | WP_087205833.1 | Transcriptional regulatory protein QseB | VF |
LOKVESSMR4R_RS00770 () | 156949..158292 | + | 1344 | WP_087205835.1 | sensor histidine kinase | - |
LOKVESSMR4R_RS00775 () | 158355..159332 | + | 978 | WP_087205837.1 | DUF2125 domain-containing protein | - |
LOKVESSMR4R_RS00780 () | 159329..160309 | - | 981 | WP_087205840.1 | YcjF family protein | - |
LOKVESSMR4R_RS00785 () | 160306..161718 | - | 1413 | WP_087205842.1 | YcjX family protein | - |
LOKVESSMR4R_RS00790 () | 161813..162586 | + | 774 | WP_087205844.1 | tRNA pseudouridine(38-40) synthase TruA | - |
LOKVESSMR4R_RS00795 () | 162754..164475 | + | 1722 | WP_087212304.1 | BamA/TamA family outer membrane protein | - |
LOKVESSMR4R_RS00800 () | 164472..168734 | + | 4263 | WP_087205846.1 | translocation/assembly module TamB domain-containing protein | - |
LOKVESSMR4R_RS00805 () | 168841..169413 | + | 573 | WP_087205848.1 | hemerythrin domain-containing protein | - |
LOKVESSMR4R_RS00810 () | 169414..169770 | - | 357 | WP_087205850.1 | dihydrodipicolinate reductase | - |
LOKVESSMR4R_RS00815 () | 169867..170676 | - | 810 | WP_087205852.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
LOKVESSMR4R_RS00820 () | 170773..171168 | + | 396 | WP_087205854.1 | 30S ribosome-binding factor RbfA | - |
LOKVESSMR4R_RS00825 () | 171165..171881 | + | 717 | WP_087205858.1 | phosphodiester glycosidase family protein | - |
LOKVESSMR4R_RS00830 () | 171848..172285 | - | 438 | WP_087205860.1 | NUDIX hydrolase | - |
LOKVESSMR4R_RS00835 () | 172391..173299 | + | 909 | WP_087212307.1 | co-chaperone YbbN | - |
LOKVESSMR4R_RS00840 () | 173326..173967 | + | 642 | WP_087205862.1 | LON peptidase substrate-binding domain-containing protein | - |
LOKVESSMR4R_RS00845 () | 173964..174143 | + | 180 | WP_087205864.1 | Trm112 family protein | - |
LOKVESSMR4R_RS00850 () | 174245..175045 | + | 801 | WP_157898095.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
---|