MGE detailed information
MGE type: Prophage MGE length: 96113 bp
Accession: NZ_CP020753 Location: 691821..787933 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Accession: NZ_CP020753 Location: 691821..787933 Organism: Shigella flexneri 1c strain Y394 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B7485_RS03385 (687116) | 687116..687379 | + | 264 | WP_000850550.1 | DUF493 family protein YbeD | - |
| B7485_RS03390 (687480) | 687480..688121 | + | 642 | WP_000284045.1 | lipoyl(octanoyl) transferase LipB | - |
| B7485_RS03395 (688380) | 688380..689333 | + | 954 | WP_000378035.1 | YbeF family transcriptional regulator | - |
| B7485_RS03400 (689542) | 689542..690507 | + | 966 | WP_000042632.1 | lipoyl synthase | - |
| B7485_RS03405 (690608) | 690608..690811 | - | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| B7485_RS03410 (690940) | 690940..691728 | - | 789 | WP_128881952.1 | deaminated glutathione amidase | - |
| B7485_RS03415 (691821) | 691821..692204 | + | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| B7485_RS03420 (692258) | 692258..692467 | - | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| B7485_RS03425 (692642) | 692642..693202 | - | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| B7485_RS03430 (693791) | 693791..695176 | + | 1386 | WP_000955063.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| B7485_RS03435 (695217) | 695217..695558 | - | 342 | Protein_664 | response regulator | - |
| B7485_RS03440 (695896) | 695896..696405 | - | 510 | WP_000833599.1 | DNA-binding protein | - |
| B7485_RS03445 (696577) | 696577..696813 | + | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| B7485_RS03450 (696788) | 696788..698419 | + | 1632 | Protein_667 | transposase domain-containing protein | - |
| B7485_RS03455 (698484) | 698484..699640 | + | 1157 | WP_134796890.1 | IS3 family transposase | - |
| B7485_RS25060 (699652) | 699652..699927 | + | 276 | WP_011069283.1 | hypothetical protein | - |
| B7485_RS03465 (699924) | 699924..700865 | - | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| B7485_RS03470 (700877) | 700877..701366 | - | 490 | Protein_671 | hypothetical protein | - |
| B7485_RS03475 (701370) | 701370..701813 | - | 444 | Protein_672 | hypothetical protein | - |
| B7485_RS03480 (701878) | 701878..703034 | + | 1157 | WP_094099483.1 | IS3-like element IS600 family transposase | - |
| B7485_RS03485 (703078) | 703078..703857 | - | 780 | Protein_674 | DUF2213 domain-containing protein | - |
| B7485_RS03490 (703861) | 703861..704604 | - | 744 | WP_000184977.1 | phage minor head protein | - |
| B7485_RS03495 (704495) | 704495..705961 | - | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| B7485_RS03500 (705961) | 705961..706694 | - | 734 | Protein_677 | PBSX family phage terminase large subunit | - |
| B7485_RS03505 (706706) | 706706..707934 | - | 1229 | Protein_678 | IS3-like element IS2 family transposase | - |
| B7485_RS03510 (708025) | 708025..708693 | - | 669 | Protein_679 | PBSX family phage terminase large subunit | - |
| B7485_RS03515 (708644) | 708644..709408 | - | 765 | WP_001108106.1 | hypothetical protein | - |
| B7485_RS03520 (709603) | 709603..710115 | + | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| B7485_RS03525 (710248) | 710248..710412 | - | 165 | WP_128863664.1 | lysis system o-spanin lipoprotein Rz1 | - |
| B7485_RS03530 (710522) | 710522..711690 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| B7485_RS03535 (711783) | 711783..712939 | + | 1157 | WP_134797294.1 | IS3-like element IS600 family transposase | - |
| B7485_RS03540 (712980) | 712980..713921 | + | 942 | Protein_685 | tyrosine-type recombinase/integrase | - |
| B7485_RS03545 (714056) | 714056..715339 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| B7485_RS03550 (715480) | 715480..717660 | - | 2181 | WP_000593940.1 | hydratase | - |
| B7485_RS03555 (717843) | 717843..719276 | - | 1434 | WP_001036463.1 | anion permease | - |
| B7485_RS03560 (719352) | 719352..720404 | - | 1053 | WP_105078295.1 | 4-oxalomesaconate tautomerase | - |
| B7485_RS03565 (720588) | 720588..721541 | + | 954 | Protein_690 | LysR family transcriptional regulator | - |
| B7485_RS03570 (721582) | 721582..722577 | - | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| B7485_RS03575 (722879) | 722879..722968 | - | 90 | Protein_692 | DNA invertase | - |
| B7485_RS03580 (723459) | 723459..725285 | + | 1827 | WP_011110560.1 | IpaH family type III secretion system E3 ubiquitin--protein ligase | - |
| B7485_RS03590 (725465) | 725465..726082 | - | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| B7485_RS03595 (726148) | 726148..727304 | + | 1157 | Protein_695 | IS3-like element IS600 family transposase | - |
| B7485_RS03600 (727349) | 727349..727548 | + | 200 | Protein_696 | hypothetical protein | - |
| B7485_RS03605 (727648) | 727648..728274 | + | 627 | Protein_697 | exonuclease | - |
| B7485_RS25435 (729510) | 729510..729626 | - | 117 | Protein_699 | hypothetical protein | - |
| B7485_RS03615 (729662) | 729662..729943 | - | 282 | WP_001069001.1 | YdaE family protein | - |
| B7485_RS03620 (729960) | 729960..730808 | - | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| B7485_RS03625 (731356) | 731356..732584 | + | 1229 | Protein_702 | IS3-like element IS2 family transposase | - |
| B7485_RS03635 (732826) | 732826..733029 | - | 204 | WP_001005968.1 | hypothetical protein | - |
| B7485_RS03640 (733031) | 733031..733186 | - | 156 | WP_001091985.1 | DUF1391 family protein | - |
| B7485_RS03645 (733389) | 733389..733796 | - | 408 | WP_128882117.1 | helix-turn-helix domain-containing protein | - |
| B7485_RS03650 (733873) | 733873..734100 | + | 228 | WP_000912291.1 | Cro/CI family transcriptional regulator | - |
| B7485_RS03655 (734084) | 734084..734506 | + | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| B7485_RS03660 (734584) | 734584..735228 | + | 645 | WP_005061591.1 | hypothetical protein | - |
| B7485_RS03665 (735374) | 735374..736120 | + | 747 | Protein_709 | ATP-binding protein | - |
| B7485_RS03670 (736135) | 736135..736557 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| B7485_RS03675 (736615) | 736615..736971 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| B7485_RS03680 (737140) | 737140..737805 | + | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| B7485_RS03685 (738033) | 738033..738188 | + | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| B7485_RS03690 (738438) | 738438..738725 | + | 288 | WP_000687442.1 | hypothetical protein | - |
| B7485_RS03695 (738764) | 738764..739132 | + | 369 | Protein_715 | DUF1367 family protein | - |
| B7485_RS03705 (740370) | 740370..740603 | + | 234 | Protein_717 | DUF1367 family protein | - |
| B7485_RS03710 (740603) | 740603..740893 | + | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| B7485_RS03715 (740890) | 740890..741000 | + | 111 | Protein_719 | DUF1133 family protein | - |
| B7485_RS03720 (741077) | 741077..742245 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| B7485_RS03725 (742256) | 742256..742696 | + | 441 | Protein_721 | DUF1133 family protein | - |
| B7485_RS03755 (743876) | 743876..743962 | + | 87 | Protein_722 | phage holin | - |
| B7485_RS25075 (745190) | 745190..745306 | + | 117 | Protein_724 | helix-turn-helix domain-containing protein | - |
| B7485_RS03770 (745414) | 745414..747255 | + | 1842 | WP_032325845.1 | toprim domain-containing protein | - |
| B7485_RS03775 (747312) | 747312..748480 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| B7485_RS03780 (748805) | 748805..749572 | + | 768 | Protein_727 | hypothetical protein | - |
| B7485_RS03785 (749647) | 749647..749925 | + | 279 | WP_005061104.1 | hypothetical protein | - |
| B7485_RS03790 (749922) | 749922..750332 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| B7485_RS03795 (750329) | 750329..750505 | + | 177 | WP_024260406.1 | NinE family protein | - |
| B7485_RS03800 (750547) | 750547..750855 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| B7485_RS03805 (750845) | 750845..751075 | - | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B7485_RS03810 (751088) | 751088..751546 | + | 459 | WP_000961311.1 | ash family protein | - |
| B7485_RS03815 (751604) | 751604..752056 | + | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| B7485_RS03820 (752053) | 752053..752286 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| B7485_RS03825 (752273) | 752273..753181 | + | 909 | WP_001247840.1 | hypothetical protein | - |
| B7485_RS03830 (753192) | 753192..754070 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| B7485_RS03835 (754067) | 754067..755458 | + | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| B7485_RS03840 (755455) | 755455..755712 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| B7485_RS03845 (755807) | 755807..756007 | + | 201 | WP_000111769.1 | protein ninH | - |
| B7485_RS03850 (756000) | 756000..756380 | + | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| B7485_RS03875 (757183) | 757183..757398 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| B7485_RS03880 (757402) | 757402..758031 | + | 630 | WP_005083349.1 | hypothetical protein | - |
| B7485_RS03885 (758097) | 758097..758630 | + | 534 | WP_001274722.1 | lysozyme | - |
| B7485_RS25080 (758627) | 758627..759094 | + | 468 | WP_000092287.1 | lysis protein | - |
| B7485_RS03895 (759297) | 759297..759476 | + | 180 | Protein_746 | Rha family transcriptional regulator | - |
| B7485_RS03905 (760807) | 760807..761160 | + | 354 | WP_000439005.1 | hypothetical protein | - |
| B7485_RS25085 (761468) | 761468..761644 | - | 177 | WP_001205133.1 | hypothetical protein | - |
| B7485_RS03920 (762041) | 762041..762253 | + | 213 | WP_005107083.1 | hypothetical protein | - |
| B7485_RS03925 (762310) | 762310..762429 | + | 120 | Protein_751 | transposase | - |
| B7485_RS03930 (762471) | 762471..762596 | - | 126 | Protein_752 | IS3 family transposase | - |
| B7485_RS03940 (763846) | 763846..764932 | - | 1087 | Protein_754 | IS3 family transposase | - |
| B7485_RS03945 (764988) | 764988..766027 | + | 1040 | Protein_755 | IS3-like element IS600 family transposase | - |
| B7485_RS03950 (766070) | 766070..766378 | + | 309 | Protein_756 | terminase small subunit | - |
| B7485_RS03955 (766350) | 766350..768278 | + | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| B7485_RS03960 (768262) | 768262..768465 | + | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| B7485_RS03965 (768462) | 768462..770055 | + | 1594 | Protein_759 | phage portal protein | - |
| B7485_RS03970 (770045) | 770045..771550 | + | 1506 | WP_075332558.1 | S49 family peptidase | - |
| B7485_RS03975 (771587) | 771587..771934 | + | 348 | WP_000256830.1 | head decoration protein | - |
| B7485_RS03980 (771992) | 771992..773020 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| B7485_RS03985 (773072) | 773072..773458 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| B7485_RS03990 (773470) | 773470..773847 | + | 378 | WP_000348593.1 | head-tail joining protein | - |
| B7485_RS03995 (773834) | 773834..774418 | + | 585 | WP_000677140.1 | phage tail protein | - |
| B7485_RS04000 (774415) | 774415..774816 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| B7485_RS04005 (774827) | 774827..775567 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| B7485_RS04010 (775626) | 775626..776012 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| B7485_RS04015 (776021) | 776021..776350 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| B7485_RS04020 (776322) | 776322..779363 | + | 3042 | WP_128881990.1 | phage tail tape measure protein | - |
| B7485_RS04025 (779363) | 779363..779692 | + | 330 | WP_000447264.1 | phage tail protein | - |
| B7485_RS04030 (779692) | 779692..780390 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| B7485_RS04035 (780395) | 780395..781138 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| B7485_RS04040 (781102) | 781102..781677 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| B7485_RS04045 (781738) | 781738..785217 | + | 3480 | WP_000515521.1 | host specificity protein J | - |
| B7485_RS04050 (785285) | 785285..785884 | + | 600 | WP_001230368.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| B7485_RS04055 (785948) | 785948..787359 | + | 1412 | Protein_777 | prophage tail fiber N-terminal domain-containing protein | - |
| B7485_RS04060 (787310) | 787310..787933 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| B7485_RS04070 (788113) | 788113..789876 | - | 1764 | WP_000801162.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| B7485_RS04075 (789968) | 789968..790054 | + | 87 | Protein_780 | transposase | - |
| B7485_RS04080 (790064) | 790064..790144 | - | 81 | Protein_781 | hypothetical protein | - |
| B7485_RS04085 (790459) | 790459..790935 | - | 477 | WP_000767391.1 | kinase inhibitor | - |
| B7485_RS04090 (790994) | 790994..792283 | - | 1290 | WP_024260402.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|