MGE detailed information
MGE type: Prophage MGE length: 54178 bp
Accession: NZ_CP020339 Location: 712971..767148 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Accession: NZ_CP020339 Location: 712971..767148 Organism: Shigella flexneri 4c strain 0702 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS653_RS03930 () | 708612..709673 | + | 1062 | WP_000138745.1 | YcjF family protein | - |
| BS653_RS03935 () | 709821..711362 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| BS653_RS03940 () | 711406..711912 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| BS653_RS03945 () | 712031..712996 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| BS653_RS03950 () | 712971..713699 | - | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| BS653_RS03955 () | 713990..714628 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| BS653_RS03960 () | 714646..715227 | - | 582 | Protein_731 | alpha/beta hydrolase | - |
| BS653_RS03965 () | 715456..716652 | + | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| BS653_RS03970 () | 716669..717028 | - | 360 | Protein_733 | alpha/beta hydrolase | - |
| BS653_RS03975 () | 717028..717948 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| BS653_RS03980 () | 718086..718520 | + | 435 | Protein_735 | HTH-type transcriptional regulator PgrR | VF |
| BS653_RS03990 () | 719825..720235 | + | 411 | Protein_737 | YdaU family protein | - |
| BS653_RS27360 () | 722001..722170 | + | 170 | Protein_739 | hypothetical protein | - |
| BS653_RS04005 () | 722316..723062 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| BS653_RS04010 () | 723077..723499 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| BS653_RS04015 () | 723557..723913 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| BS653_RS04020 () | 724006..724224 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| BS653_RS04025 () | 724226..724591 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| BS653_RS04030 () | 724588..725253 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| BS653_RS04035 () | 725253..725618 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 726003..726061 | - | 59 | - | - | Antitoxin Detail |
| BS653_RS04045 () | 726073..726228 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| BS653_RS04065 () | 727565..728164 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| BS653_RS04070 () | 728164..728454 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| BS653_RS04075 () | 728451..729005 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| BS653_RS04080 () | 729158..729331 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| BS653_RS04085 () | 729393..730532 | + | 1140 | WP_000088353.1 | IS3 family transposase IS600 | Transposase |
| BS653_RS04090 () | 730603..731085 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| BS653_RS04115 () | 731719..733323 | + | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| BS653_RS04125 () | 734145..735313 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| BS653_RS04130 () | 735691..735843 | + | 153 | Protein_757 | Rha family transcriptional regulator | - |
| BS653_RS04135 () | 735902..736599 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| BS653_RS04140 () | 736615..737520 | + | 906 | Protein_759 | IS3 family transposase ISSd1 | Transposase |
| BS653_RS04145 () | 737548..737916 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| BS653_RS04155 () | 737940..738484 | + | 545 | Protein_761 | tail fiber assembly protein | - |
| BS653_RS04160 () | 738508..739776 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| BS653_RS04165 () | 739727..740350 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| BS653_RS04170 () | 740551..741408 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| BS653_RS04175 () | 741405..742262 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| BS653_RS04180 () | 742259..743086 | - | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| BS653_RS04185 () | 743086..744000 | - | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| BS653_RS04190 () | 744432..745073 | - | 642 | Protein_768 | Putative defective protein IntQ ; Integrase | Integrase |
| BS653_RS04195 () | 745127..745824 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| BS653_RS04200 () | 745841..746011 | - | 171 | Protein_770 | DUF3596 domain-containing protein | - |
| BS653_RS04205 () | 746013..746180 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| BS653_RS04210 () | 746228..747434 | - | 1207 | Protein_772 | IS3 family transposase IS629 | Transposase |
| BS653_RS04215 () | 747509..748606 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| BS653_RS04220 () | 748612..748872 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| BS653_RS04225 () | 748971..750127 | + | 1157 | Protein_775 | IS3 family transposase IS600 | Transposase |
| BS653_RS04230 () | 750184..751599 | - | 1416 | Protein_776 | exodeoxyribonuclease VIII | - |
| BS653_RS04235 () | 751699..751974 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| BS653_RS04240 () | 752049..752219 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| BS653_RS04245 () | 752219..752440 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| BS653_RS04255 () | 753787..754675 | - | 889 | Protein_781 | Rha family transcriptional regulator | - |
| BS653_RS26850 () | 755899..756279 | + | 381 | Protein_782 | IS66 family transposase ISSfl3 | Transposase |
| BS653_RS26855 () | 756281..756448 | + | 168 | Protein_783 | IS66 family transposase ISSfl3 | Transposase |
| BS653_RS04280 () | 756399..757022 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| BS653_RS27365 () | 757028..757132 | + | 105 | Protein_785 | tail fiber assembly protein | - |
| BS653_RS04285 () | 757201..758916 | - | 1716 | WP_128568580.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| BS653_RS04290 () | 759458..760155 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| BS653_RS04295 () | 760435..760881 | + | 447 | Protein_788 | metallophosphoesterase | - |
| BS653_RS04300 () | 760946..762102 | + | 1157 | WP_094085510.1 | IS3 family transposase IS600 | Transposase |
| BS653_RS04305 () | 762146..762334 | + | 189 | Protein_790 | serine/threonine-protein phosphatase | - |
| BS653_RS04310 () | 762359..762550 | - | 192 | WP_005049838.1 | YebW family protein | - |
| BS653_RS04315 () | 762655..762891 | - | 237 | WP_001295499.1 | YebV family protein | - |
| BS653_RS04320 () | 763009..764448 | - | 1440 | Protein_793 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BS653_RS04325 () | 764528..767148 | - | 2621 | Protein_794 | hypothetical protein | VF |
| BS653_RS04330 () | 767117..768400 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| BS653_RS04335 () | 768530..769027 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| BS653_RS04340 () | 769124..769822 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| BS653_RS04345 () | 769842..771890 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|