MGE detailed information
MGE type: Conjugative plasmid MGE length: 81841 bp
Accession: NZ_CP018320 Location: 1..81841 Organism: Pseudomonas frederiksbergensis strain AS1 Replicon: plasmid unnamed
Accession: NZ_CP018320 Location: 1..81841 Organism: Pseudomonas frederiksbergensis strain AS1 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PFAS1_RS28645 () | 923..1399 | - | 477 | Protein_1 | hypothetical protein | - |
| PFAS1_RS28650 () | 1484..1693 | - | 210 | WP_019694519.1 | hypothetical protein | - |
| PFAS1_RS28655 () | 1812..2558 | - | 747 | WP_080690697.1 | hypothetical protein | - |
| PFAS1_RS28660 () | 2941..3927 | + | 987 | WP_011117469.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| PFAS1_RS28665 () | 4071..4385 | + | 315 | WP_011117470.1 | non-heme iron oxygenase ferredoxin subunit | - |
| PFAS1_RS28670 () | 4456..5805 | + | 1350 | WP_076031629.1 | Rieske 2Fe-2S domain-containing protein | - |
| PFAS1_RS28675 () | 5820..6404 | + | 585 | WP_011117401.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| PFAS1_RS28680 () | 6473..7252 | + | 780 | WP_011117402.1 | 3-(cis-5,6-dihydroxycyclohexa-1, 3-dien-1-yl)propanoate dehydrogenase | - |
| PFAS1_RS28685 () | 7299..8750 | + | 1452 | WP_011117403.1 | aldehyde dehydrogenase | - |
| PFAS1_RS28690 () | 8778..9686 | + | 909 | WP_011117404.1 | 1,2-dihydroxynaphthalene dioxygenase | - |
| PFAS1_RS28695 () | 9942..10577 | + | 636 | WP_031319756.1 | OmpW family protein | - |
| PFAS1_RS28700 () | 10626..11630 | + | 1005 | WP_011117406.1 | trans-o-hydroxybenzylidenepyruvate hydratase-aldolase | - |
| PFAS1_RS28705 () | 11884..12483 | + | 600 | WP_011117407.1 | 2-hydroxychromene-2-carboxylate isomerase | - |
| PFAS1_RS28710 () | 12893..13806 | - | 914 | Protein_14 | recombinase family protein | - |
| PFAS1_RS28715 () | 14027..14386 | + | 360 | Protein_15 | transposase | - |
| PFAS1_RS28720 () | 14642..15055 | - | 414 | WP_011154418.1 | helix-turn-helix transcriptional regulator | - |
| PFAS1_RS28725 () | 15161..15778 | + | 618 | WP_011117411.1 | glutathione transferase GstA | - |
| PFAS1_RS28730 () | 15790..16854 | + | 1065 | WP_011117412.1 | alkene reductase | - |
| PFAS1_RS28735 () | 17238..18269 | + | 1032 | WP_011117413.1 | aldo/keto reductase | - |
| PFAS1_RS29680 () | 18286..18663 | + | 378 | WP_011154419.1 | glutathione-S-transferase-like protein | - |
| PFAS1_RS28745 () | 18857..19594 | - | 738 | Protein_21 | helicase | - |
| PFAS1_RS29685 () | 19584..19853 | - | 270 | Protein_22 | phage tail protein | - |
| PFAS1_RS28750 () | 19987..20898 | - | 912 | WP_011117414.1 | SdiA-regulated domain-containing protein | - |
| PFAS1_RS28755 () | 20945..21304 | - | 360 | WP_011117415.1 | TraR/DksA family transcriptional regulator | - |
| PFAS1_RS28760 () | 21304..22047 | - | 744 | WP_031319755.1 | universal stress protein | - |
| PFAS1_RS28765 () | 22370..23277 | - | 908 | Protein_26 | phage tail protein | - |
| PFAS1_RS28770 () | 23458..24372 | - | 915 | WP_011117418.1 | transcriptional regulator GcvA | - |
| PFAS1_RS28775 () | 24677..25450 | + | 774 | WP_011117419.1 | SDR family oxidoreductase | - |
| PFAS1_RS28780 () | 25524..25802 | + | 279 | Protein_29 | hypothetical protein | - |
| PFAS1_RS28785 () | 25942..26259 | + | 318 | WP_110389057.1 | OsmC family protein | - |
| PFAS1_RS28790 () | 26151..26819 | - | 669 | WP_019694526.1 | DDE-type integrase/transposase/recombinase | - |
| PFAS1_RS28795 () | 26816..27202 | - | 387 | WP_011154423.1 | transposase | - |
| PFAS1_RS28800 () | 27272..27808 | - | 537 | Protein_33 | IS30 family transposase | - |
| PFAS1_RS28810 () | 28029..29645 | - | 1617 | WP_011117423.1 | methyl-accepting chemotaxis protein | - |
| PFAS1_RS28815 () | 29882..30073 | - | 192 | WP_011117424.1 | 2-hydroxymuconate tautomerase | - |
| PFAS1_RS28820 () | 30128..30922 | - | 795 | WP_011117425.1 | 2-oxo-3-hexenedioate decarboxylase | - |
| PFAS1_RS28825 () | 30919..31959 | - | 1041 | WP_011117426.1 | 4-hydroxy-2-oxovalerate aldolase | - |
| PFAS1_RS28830 () | 31971..32894 | - | 924 | WP_011117427.1 | acetaldehyde dehydrogenase (acetylating) | - |
| PFAS1_RS28835 () | 32914..33699 | - | 786 | WP_011117428.1 | 2-oxopent-4-enoate hydratase | - |
| PFAS1_RS28840 () | 33711..34592 | - | 882 | WP_011117429.1 | alpha/beta fold hydrolase | - |
| PFAS1_RS28845 () | 34600..36060 | - | 1461 | WP_011117430.1 | 2-hydroxymuconic semialdehyde dehydrogenase | - |
| PFAS1_RS28850 () | 36095..37018 | - | 924 | WP_011117431.1 | catechol 2,3-dioxygenase | - |
| PFAS1_RS28855 () | 37039..37356 | - | 318 | WP_011117432.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| PFAS1_RS29820 () | 37340..37558 | - | 219 | WP_024265233.1 | hypothetical protein | - |
| PFAS1_RS28865 () | 37856..39160 | - | 1305 | WP_011154425.1 | salicylate 1-monooxygenase | - |
| PFAS1_RS28870 () | 39312..40214 | + | 903 | WP_011117383.1 | HTH-type transcriptional activator NahR | - |
| PFAS1_RS28875 () | 40274..40653 | + | 380 | Protein_47 | IS30 family transposase | - |
| PFAS1_RS28885 () | 40824..41771 | + | 948 | Protein_48 | tyrosine-type recombinase/integrase | - |
| PFAS1_RS28895 () | 42142..42657 | - | 516 | WP_173495103.1 | hypothetical protein | - |
| PFAS1_RS28900 () | 42671..43095 | - | 425 | Protein_50 | S24 family peptidase | - |
| PFAS1_RS28905 () | 43680..43976 | - | 297 | WP_011117436.1 | putative addiction module antidote protein | Antitoxin Detail |
| PFAS1_RS28910 () | 43973..44275 | - | 303 | WP_011117437.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PFAS1_RS28915 () | 44485..44889 | + | 405 | WP_011117438.1 | hypothetical protein | - |
| PFAS1_RS28920 () | 44940..45424 | + | 485 | Protein_54 | single-stranded DNA-binding protein | - |
| PFAS1_RS28925 () | 45619..46446 | + | 828 | WP_011117440.1 | DUF945 domain-containing protein | - |
| PFAS1_RS28930 () | 46501..46923 | + | 423 | WP_011117441.1 | hypothetical protein | - |
| PFAS1_RS28935 () | 46947..47276 | + | 330 | WP_011117442.1 | hypothetical protein | - |
| PFAS1_RS28940 () | 47269..47541 | + | 273 | WP_019694539.1 | hypothetical protein | - |
| PFAS1_RS28945 () | 47808..48071 | + | 264 | WP_019694540.1 | hypothetical protein | - |
| PFAS1_RS28950 () | 48581..49366 | - | 786 | WP_011117444.1 | SprT-like domain-containing protein | - |
| PFAS1_RS28955 () | 49503..49889 | - | 387 | WP_019694541.1 | hypothetical protein | - |
| PFAS1_RS28960 () | 49893..50612 | - | 720 | WP_011117446.1 | hypothetical protein | - |
| PFAS1_RS28965 () | 50609..51064 | - | 456 | WP_011117447.1 | hypothetical protein | - |
| PFAS1_RS28970 () | 51493..51885 | + | 393 | WP_011117448.1 | hypothetical protein | - |
| PFAS1_RS28975 () | 51878..53434 | + | 1557 | WP_011117449.1 | type IV secretion system DNA-binding domain-containing protein | - |
| PFAS1_RS28980 () | 53445..56390 | + | 2946 | WP_011117450.1 | conjugative relaxase | - |
| PFAS1_RS28985 () | 56467..57048 | + | 582 | WP_011117451.1 | hypothetical protein | - |
| PFAS1_RS28990 () | 57377..58015 | - | 639 | WP_011117452.1 | hypothetical protein | - |
| PFAS1_RS28995 () | 58063..58545 | - | 483 | WP_011117453.1 | hypothetical protein | - |
| PFAS1_RS29000 () | 58560..59165 | - | 606 | WP_011117454.1 | phospholipase D family protein | - |
| PFAS1_RS29005 () | 59155..59484 | - | 330 | WP_011117455.1 | hypothetical protein | - |
| PFAS1_RS29010 () | 59514..60419 | - | 906 | WP_011117456.1 | lytic transglycosylase domain-containing protein | - |
| PFAS1_RS29015 () | 60403..61431 | - | 1029 | WP_011117457.1 | P-type DNA transfer ATPase VirB11 | - |
| PFAS1_RS29020 () | 61441..62724 | - | 1284 | WP_011117458.1 | TrbI/VirB10 family protein | - |
| PFAS1_RS29025 () | 62727..63518 | - | 792 | WP_011117459.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PFAS1_RS29030 () | 63543..64208 | - | 666 | WP_011117460.1 | type IV secretion system protein | - |
| PFAS1_RS29035 () | 64212..65075 | - | 864 | WP_011117461.1 | type IV secretion system protein | - |
| PFAS1_RS29040 () | 65063..65467 | - | 405 | WP_011117462.1 | hypothetical protein | - |
| PFAS1_RS29045 () | 65460..65672 | - | 213 | WP_011117463.1 | hypothetical protein | - |
| PFAS1_RS29050 () | 65700..66389 | - | 690 | WP_011117464.1 | mating pair formation protein | - |
| PFAS1_RS29055 () | 66386..69070 | - | 2685 | WP_011117465.1 | mating pair formation protein | - |
| PFAS1_RS29060 () | 69057..69350 | - | 294 | WP_011117466.1 | VirB3 family type IV secretion system protein | - |
| PFAS1_RS29065 () | 69354..69815 | - | 462 | WP_011117467.1 | TrbC/VirB2 family protein | - |
| PFAS1_RS29075 () | 70759..71526 | + | 768 | WP_011117384.1 | ParA family protein | - |
| PFAS1_RS29080 () | 71540..72466 | + | 927 | WP_011117385.1 | ParB/RepB/Spo0J family partition protein | - |
| PFAS1_RS29085 () | 72463..72804 | + | 342 | WP_011117386.1 | ParR | - |
| PFAS1_RS29090 () | 72809..73114 | + | 306 | WP_011117387.1 | hypothetical protein | - |
| PFAS1_RS29095 () | 73215..73535 | + | 321 | WP_012727769.1 | hypothetical protein | - |
| PFAS1_RS29100 () | 73803..74432 | + | 630 | WP_011117388.1 | recombinase family protein | - |
| PFAS1_RS29105 () | 74880..75449 | + | 570 | WP_011117389.1 | replication protein | - |
| PFAS1_RS29110 () | 75489..76250 | + | 762 | WP_011117390.1 | hypothetical protein | - |
| PFAS1_RS29115 () | 76703..76891 | + | 189 | WP_052014790.1 | hypothetical protein | - |
| PFAS1_RS29360 () | 77050..77853 | + | 804 | WP_011117392.1 | DUF1173 family protein | - |
| PFAS1_RS29365 () | 77854..78318 | + | 465 | WP_080690698.1 | DUF1173 family protein | - |
| PFAS1_RS29125 () | 78362..78757 | + | 396 | WP_011117394.1 | hypothetical protein | - |
| PFAS1_RS29825 () | 78754..79827 | - | 1074 | WP_052014788.1 | Y-family DNA polymerase | - |
| PFAS1_RS29135 () | 81000..81407 | + | 408 | WP_011117396.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|