MGE detailed information
MGE type: Genomic_island MGE length: 29012 bp
Accession: NZ_CP017638 Location: 677192..706203 Organism: Dickeya dianthicola RNS04.9 Replicon: chromosome
Accession: NZ_CP017638 Location: 677192..706203 Organism: Dickeya dianthicola RNS04.9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDI_RS03290 () | 674354..675601 | - | 1248 | WP_024104802.1 | conjugal transfer protein TraF | - |
| DDI_RS03295 () | 676315..676710 | + | 396 | WP_024104803.1 | helix-turn-helix transcriptional regulator | - |
| DDI_RS03300 () | 676930..677073 | - | 144 | Protein_638 | transposase | - |
| DDI_RS03305 () | 677192..677932 | - | 741 | WP_024104804.1 | alpha/beta hydrolase | - |
| DDI_RS03315 () | 678408..678564 | - | 157 | Protein_640 | IS4 family transposase | - |
| DDI_RS03320 () | 678635..678916 | + | 282 | Protein_641 | ATP-binding protein | - |
| DDI_RS03330 () | 679680..680405 | + | 726 | WP_024104808.1 | Expansin-yoaJ | - |
| DDI_RS03335 () | 680461..681408 | + | 948 | WP_024104809.1 | glycoside hydrolase family 5 protein | - |
| DDI_RS03340 () | 681528..681791 | - | 264 | Protein_644 | transposase | - |
| DDI_RS03345 () | 681788..682212 | + | 425 | Protein_645 | efflux RND transporter permease subunit | - |
| DDI_RS03350 () | 682311..683345 | - | 1035 | WP_024104810.1 | alpha/beta hydrolase fold domain-containing protein | - |
| DDI_RS03355 () | 683740..684288 | - | 549 | WP_024104811.1 | TetR/AcrR family transcriptional regulator | - |
| DDI_RS03360 () | 684422..685513 | + | 1092 | WP_024104812.1 | alkene reductase | - |
| DDI_RS03365 () | 685589..686371 | + | 783 | WP_024104813.1 | SDR family oxidoreductase | - |
| DDI_RS03370 () | 686504..687322 | + | 819 | WP_024104814.1 | oxidoreductase | - |
| DDI_RS03375 () | 687325..687735 | + | 411 | WP_024104815.1 | hypothetical protein | - |
| DDI_RS03380 () | 687732..688751 | + | 1020 | WP_024104816.1 | NADP-dependent oxidoreductase | - |
| DDI_RS03385 () | 688952..689956 | + | 1005 | WP_099327157.1 | IS110 family transposase | - |
| DDI_RS03390 () | 690264..690467 | + | 204 | Protein_654 | transposase | - |
| DDI_RS03395 () | 690457..691076 | - | 620 | Protein_655 | transposase | - |
| DDI_RS03400 () | 691384..692388 | - | 1005 | WP_099327158.1 | IS110 family transposase | - |
| DDI_RS03405 () | 692672..692977 | - | 306 | WP_024104817.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DDI_RS03410 () | 692980..693198 | - | 219 | WP_024104818.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DDI_RS03415 () | 693257..693583 | - | 327 | Protein_659 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| DDI_RS21865 () | 693575..693703 | - | 129 | Protein_660 | DUF4102 domain-containing protein | - |
| DDI_RS03420 () | 693811..693993 | - | 183 | WP_024109619.1 | hypothetical protein | - |
| DDI_RS03425 () | 694142..694858 | - | 717 | WP_024104820.1 | M48 family metallopeptidase | - |
| DDI_RS03430 () | 694858..697953 | - | 3096 | WP_024104821.1 | HsdR family type I site-specific deoxyribonuclease | - |
| DDI_RS03440 () | 698117..699184 | - | 1068 | WP_024104822.1 | macro domain-containing protein | Antitoxin Detail |
| DDI_RS03445 () | 699181..699837 | - | 657 | WP_024104823.1 | DUF4433 domain-containing protein | Toxin Detail |
| DDI_RS03450 () | 699840..700415 | - | 576 | WP_024104824.1 | DUF4433 domain-containing protein | - |
| DDI_RS03455 () | 700420..701769 | - | 1350 | WP_051119513.1 | restriction endonuclease subunit S | - |
| DDI_RS03460 () | 701781..704216 | - | 2436 | WP_024104826.1 | type I restriction-modification system subunit M | - |
| DDI_RS03465 () | 704256..704495 | - | 240 | WP_024104827.1 | hypothetical protein | - |
| DDI_RS03470 () | 704895..705356 | + | 462 | WP_024104828.1 | hypothetical protein | - |
| DDI_RS03475 () | 705353..705574 | + | 222 | WP_024104829.1 | helix-turn-helix domain-containing protein | - |
| DDI_RS03485 () | 706477..707736 | - | 1260 | WP_024104830.1 | integrase arm-type DNA-binding domain-containing protein | - |
| DDI_RS03495 () | 708641..710794 | + | 2154 | WP_024104831.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|