MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 73026 bp
Accession: NZ_CP016943 Location: 1..73026 Organism: Yersinia enterocolitica strain YE3 Replicon: plasmid unnamed2
Accession: NZ_CP016943 Location: 1..73026 Organism: Yersinia enterocolitica strain YE3 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BED35_RS00485 () | 1077..1997 | + | 921 | WP_010891207.1 | Protein YopD | VF |
| BED35_RS23865 () | 2222..2728 | + | 507 | Protein_2 | transposase | - |
| BED35_RS00500 () | 2771..3874 | - | 1104 | WP_010891206.1 | Outer membrane protein YopM | VF |
| BED35_RS23870 () | 4645..4931 | + | 287 | Protein_4 | DDE-type integrase/transposase/recombinase | - |
| BED35_RS00510 () | 5227..5364 | + | 138 | WP_002212997.1 | hypothetical protein | - |
| BED35_RS00515 () | 5539..6628 | - | 1090 | Protein_6 | IS3 family transposase ISYal1 | Transposase |
| BED35_RS23875 () | 6700..6857 | - | 158 | Protein_7 | DDE-type integrase/transposase/recombinase | - |
| BED35_RS00520 () | 7263..7655 | - | 393 | WP_010891204.1 | Chaperone protein SycT | VF |
| BED35_RS00525 () | 7655..8623 | - | 969 | WP_069009717.1 | Cysteine protease YopT | VF |
| BED35_RS00530 () | 9144..9692 | + | 549 | WP_010891202.1 | hypothetical protein | VF |
| BED35_RS23880 () | 9851..10137 | + | 287 | Protein_11 | IS3 family transposase | - |
| BED35_RS00540 () | 10174..10911 | + | 738 | WP_071890449.1 | complement resistance protein TraT | - |
| BED35_RS00545 () | 11435..12301 | - | 867 | WP_057618955.1 | Effector protein YopJ | VF |
| BED35_RS00550 () | 12782..14970 | - | 2189 | Protein_14 | Protein kinase YpkA | VF |
| BED35_RS00555 () | 14978..15427 | - | 450 | WP_050294025.1 | hypothetical protein | VF |
| BED35_RS23885 () | 15589..15678 | + | 90 | WP_069009728.1 | IS3 family transposase ISEam1 | Transposase |
| BED35_RS23550 () | 15740..16580 | + | 841 | Protein_17 | IS3 family transposase | - |
| BED35_RS00575 () | 16780..17568 | - | 789 | Protein_18 | Tn3 family transposase ISPsy39 | Transposase |
| BED35_RS00580 () | 17568..17825 | - | 258 | Protein_19 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| BED35_RS00585 () | 17825..18412 | - | 588 | WP_080357947.1 | Adenosine monophosphate-protein transferase SoFic | VF |
| BED35_RS00590 () | 18549..19094 | + | 546 | WP_050294028.1 | hypothetical protein | - |
| BED35_RS00595 () | 20084..20962 | - | 879 | WP_162467786.1 | incFII family plasmid replication initiator RepA | - |
| BED35_RS22520 () | 20943..21017 | - | 75 | WP_071598612.1 | RepA leader peptide Tap | - |
| BED35_RS00600 () | 21259..21513 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| BED35_RS00605 () | 21651..22196 | - | 546 | WP_050294029.1 | Phospholipase D | VF |
| BED35_RS23895 () | 22382..22709 | - | 328 | Protein_26 | DDE-type integrase/transposase/recombinase | - |
| BED35_RS23900 () | 22794..22931 | + | 138 | Protein_27 | transposase | - |
| BED35_RS00610 () | 23000..24089 | + | 1090 | Protein_28 | IS3 family transposase ISYal1 | Transposase |
| BED35_RS00615 () | 24105..24771 | - | 667 | Protein_29 | Multifunctional conjugation protein TraI | Relaxase |
| BED35_RS00625 () | 25062..25424 | - | 363 | Protein_30 | hypothetical protein | - |
| BED35_RS00630 () | 25536..26234 | - | 699 | WP_050294038.1 | arsenic resistance NADPH-dependent reductase ArsH | - |
| BED35_RS00635 () | 26320..26640 | + | 321 | WP_013749489.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| BED35_RS00640 () | 26686..27975 | + | 1290 | WP_057618950.1 | arsenite efflux transporter membrane subunit ArsB | - |
| BED35_RS00645 () | 27988..28413 | + | 426 | WP_010891244.1 | glutaredoxin-dependent arsenate reductase | - |
| BED35_RS00650 () | 28431..29012 | - | 582 | WP_050294040.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| BED35_RS00655 () | 29173..30024 | + | 852 | WP_050294041.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| BED35_RS00660 () | 30180..30632 | + | 453 | WP_010891241.1 | PprA | - |
| BED35_RS00665 () | 30954..31829 | - | 876 | WP_013749484.1 | DMT family transporter | - |
| BED35_RS00670 () | 31899..33317 | - | 1419 | WP_050294042.1 | Adhesin YadA | VF |
| BED35_RS23565 () | 33914..34475 | + | 562 | Protein_40 | transposase family protein | - |
| BED35_RS00680 () | 34571..35404 | - | 834 | Protein_41 | Tn3 family transposase TnpA_Tn3 | Transposase |
| BED35_RS00685 () | 35577..35927 | - | 351 | WP_016266427.1 | Yop proteins translocation protein M | VF |
| BED35_RS00695 () | 36019..37147 | - | 1129 | Protein_43 | IS3 family transposase ISYal1 | Transposase |
| BED35_RS00700 () | 37183..38296 | - | 1114 | Protein_44 | IS3 family transposase ISYal1 | Transposase |
| BED35_RS00705 () | 38609..38827 | + | 219 | WP_013749479.1 | hypothetical protein | - |
| BED35_RS00710 () | 38888..39358 | - | 471 | WP_010891240.1 | IS481 family transposase ISAzs36 | Transposase |
| BED35_RS00720 () | 39800..40966 | + | 1167 | WP_010891239.1 | Sporulation initiation inhibitor protein Soj | VF |
| BED35_RS00725 () | 40963..41928 | + | 966 | WP_050294053.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| BED35_RS23570 () | 42308..42600 | + | 293 | Protein_49 | IS6 family transposase ISEas1 | Transposase |
| BED35_RS00730 () | 42766..43008 | + | 243 | WP_005176524.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| BED35_RS00735 () | 43001..43300 | + | 300 | WP_014609469.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BED35_RS00740 () | 43441..44100 | - | 660 | WP_072089396.1 | Outer membrane virulence protein YopE | VF |
| BED35_RS00745 () | 44293..44685 | + | 393 | WP_010891236.1 | YopE regulator | VF |
| BED35_RS23575 () | 44920..46092 | + | 1173 | Protein_54 | IS3 family transposase | - |
| BED35_RS00760 () | 46296..46721 | + | 426 | WP_010891235.1 | hypothetical protein | VF |
| BED35_RS00765 () | 46949..48355 | - | 1407 | WP_069009740.1 | Tyrosine-protein phosphatase YopH | VF |
| BED35_RS00770 () | 49038..49385 | - | 348 | WP_050293994.1 | Yop proteins translocation protein M | VF |
| BED35_RS00775 () | 49585..50256 | - | 672 | WP_080478656.1 | Yop proteins translocation protein L | VF |
| BED35_RS00780 () | 50202..50831 | - | 630 | WP_057618913.1 | Yop proteins translocation protein K | VF |
| BED35_RS00785 () | 50831..51565 | - | 735 | WP_005176483.1 | Yop proteins translocation lipoprotein J | VF |
| BED35_RS00790 () | 51572..51919 | - | 348 | WP_005176480.1 | Yop proteins translocation protein I | VF |
| BED35_RS00795 () | 51920..52417 | - | 498 | WP_005176477.1 | Yop proteins translocation protein H | VF |
| BED35_RS00800 () | 52414..52761 | - | 348 | WP_014609476.1 | Putative Yop proteins translocation protein G | VF |
| BED35_RS00805 () | 52763..53026 | - | 264 | WP_014609477.1 | Yop proteins translocation protein F | VF |
| BED35_RS00810 () | 53023..53226 | - | 204 | WP_050293995.1 | Putative Yop proteins translocation protein E | VF |
| BED35_RS00815 () | 53223..54479 | - | 1257 | WP_050293996.1 | Yop proteins translocation protein D | VF |
| BED35_RS00820 () | 54476..56298 | - | 1823 | Protein_67 | Yop proteins translocation protein C | VF |
| BED35_RS00825 () | 56304..56717 | - | 414 | WP_050293998.1 | Chaperone protein YscB | VF |
| BED35_RS00830 () | 56943..57041 | - | 99 | WP_010891223.1 | type III secretion system protein YscA | - |
| BED35_RS00835 () | 57120..57935 | - | 816 | WP_013749464.1 | Virulence regulon transcriptional activator VirF | VF |
| BED35_RS00840 () | 58059..58453 | - | 395 | Protein_71 | Exoenzyme S synthesis protein B | VF |
| BED35_RS00845 () | 59029..60093 | - | 1065 | WP_010891221.1 | Yop proteins translocation protein U | VF |
| BED35_RS00850 () | 60093..60878 | - | 786 | WP_013749462.1 | Surface presentation of antigens protein SpaR | VF |
| BED35_RS00855 () | 60875..61141 | - | 267 | WP_057618912.1 | hypothetical protein | VF |
| BED35_RS00860 () | 61143..61795 | - | 653 | Protein_75 | Surface presentation of antigens protein SpaP | VF |
| BED35_RS00865 () | 61792..62715 | - | 924 | WP_005176825.1 | Yop proteins translocation protein Q | VF |
| BED35_RS23905 () | 62712..63305 | - | 594 | Protein_77 | hypothetical protein | VF |
| BED35_RS23910 () | 63480..64364 | - | 885 | Protein_78 | hypothetical protein | VF |
| BED35_RS00875 () | 64364..64828 | - | 465 | WP_005176819.1 | Yop proteins translocation protein O | VF |
| BED35_RS00880 () | 64825..66143 | - | 1319 | Protein_80 | putative ATP synthase YscN | VF |
| BED35_RS00885 () | 66341..67222 | + | 882 | WP_050293999.1 | Outer membrane protein YopN | VF |
| BED35_RS00890 () | 67203..67481 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| BED35_RS00895 () | 67468..67839 | + | 372 | WP_010891215.1 | Chaperone protein SycN | VF |
| BED35_RS00900 () | 67836..68204 | + | 369 | WP_010891214.1 | Yop proteins translocation protein X | VF |
| BED35_RS00905 () | 68201..68545 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| BED35_RS00910 () | 68532..70645 | + | 2114 | Protein_86 | Invasion protein InvA | VF |
| BED35_RS00915 () | 70642..71082 | + | 441 | WP_010891212.1 | hypothetical protein | VF |
| BED35_RS00920 () | 71124..71411 | + | 288 | WP_010891211.1 | hypothetical protein | VF |
| BED35_RS00925 () | 71413..72393 | + | 981 | WP_069009749.1 | Virulence-associated V antigen | VF |
| BED35_RS00930 () | 72396..72902 | + | 507 | WP_050294002.1 | Chaperone protein IpgC | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|