MGE detailed information
MGE type: Prophage MGE length: 84530 bp
Accession: NZ_CP015379 Location: 3623082..3707611 Organism: Hafnia alvei strain HUMV-5920 Replicon: chromosome
Accession: NZ_CP015379 Location: 3623082..3707611 Organism: Hafnia alvei strain HUMV-5920 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6V27_RS16305 () | 3619475..3619684 | + | 210 | WP_004094959.1 | transcription antiterminator/RNA stability regulator CspE | - |
| A6V27_RS16310 () | 3619767..3620276 | + | 510 | WP_063587047.1 | GNAT family N-acetyltransferase | - |
| A6V27_RS16315 () | 3620375..3620680 | + | 306 | WP_025796792.1 | YebG family protein | - |
| A6V27_RS16320 () | 3620720..3621028 | + | 309 | WP_040044868.1 | N(4)-acetylcytidine aminohydrolase | - |
| A6V27_RS16325 () | 3621131..3621490 | + | 360 | WP_040044869.1 | hypothetical protein | - |
| A6V27_RS16330 () | 3622115..3623002 | + | 888 | WP_063587048.1 | EAL domain-containing protein | - |
| A6V27_RS16335 () | 3623082..3625130 | + | 2049 | WP_063587049.1 | S9 family peptidase | - |
| A6V27_RS16340 () | 3625217..3626020 | + | 804 | WP_063587050.1 | alpha/beta fold hydrolase | - |
| A6V27_RS16345 () | 3626095..3627207 | - | 1113 | WP_063587051.1 | porin OmpC | - |
| A6V27_RS16350 () | 3628715..3629092 | + | 378 | WP_063587052.1 | copper homeostasis periplasmic binding protein CopC | - |
| A6V27_RS16355 () | 3629101..3629979 | + | 879 | WP_063587053.1 | copper homeostasis membrane protein CopD | - |
| A6V27_RS16360 () | 3630026..3630379 | + | 354 | WP_063587054.1 | YebY family protein | - |
| A6V27_RS16365 () | 3630487..3630729 | - | 243 | WP_008813610.1 | DUF4060 family protein | - |
| A6V27_RS16370 () | 3631037..3631993 | + | 957 | WP_063587055.1 | 6-phosphofructokinase II | - |
| A6V27_RS16375 () | 3632540..3632845 | + | 306 | WP_040044878.1 | type 1 fimbrial protein | - |
| A6V27_RS16380 () | 3633034..3633378 | + | 345 | WP_025796763.1 | RNA helicase | - |
| A6V27_RS16390 () | 3633648..3634043 | - | 396 | WP_063587057.1 | DUF937 domain-containing protein | - |
| A6V27_RS16395 () | 3634296..3634634 | + | 339 | WP_046449249.1 | osmotically-inducible lipoprotein OsmE | - |
| A6V27_RS16400 () | 3634925..3636121 | + | 1197 | WP_063587058.1 | MFS transporter | - |
| A6V27_RS16405 () | 3636263..3637246 | - | 984 | WP_063587059.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| A6V27_RS16410 () | 3637346..3637645 | - | 300 | WP_025796751.1 | helix-turn-helix domain-containing protein | - |
| A6V27_RS16415 () | 3637768..3638043 | + | 276 | WP_025796749.1 | hypothetical protein | - |
| A6V27_RS21565 () | 3638062..3638244 | + | 183 | WP_081250304.1 | hypothetical protein | - |
| A6V27_RS16420 () | 3638225..3638725 | + | 501 | WP_025796747.1 | hypothetical protein | - |
| A6V27_RS16425 () | 3638794..3639042 | + | 249 | WP_063587060.1 | DUF2732 family protein | - |
| A6V27_RS16430 () | 3639042..3639332 | + | 291 | WP_063587061.1 | DUF5405 family protein | - |
| A6V27_RS16435 () | 3639349..3639633 | + | 285 | WP_063587617.1 | DUF5405 family protein | - |
| A6V27_RS16440 () | 3639635..3641905 | + | 2271 | WP_063587062.1 | replication endonuclease | - |
| A6V27_RS21850 () | 3642057..3643790 | + | 1734 | WP_063587063.1 | hypothetical protein | - |
| A6V27_RS16450 () | 3644247..3645269 | - | 1023 | WP_063587064.1 | phage portal protein | - |
| A6V27_RS16455 () | 3645269..3647041 | - | 1773 | WP_063587065.1 | terminase ATPase subunit family protein | - |
| A6V27_RS16460 () | 3647209..3648054 | + | 846 | WP_061553138.1 | GPO family capsid scaffolding protein | - |
| A6V27_RS16465 () | 3648120..3649214 | + | 1095 | WP_063587066.1 | phage major capsid protein, P2 family | - |
| A6V27_RS16470 () | 3649217..3649996 | + | 780 | WP_063587067.1 | terminase | - |
| A6V27_RS16475 () | 3650090..3650596 | + | 507 | WP_063587068.1 | head completion/stabilization protein | - |
| A6V27_RS16480 () | 3650596..3650799 | + | 204 | WP_063587069.1 | tail protein X | - |
| A6V27_RS16485 () | 3650803..3651099 | + | 297 | WP_061553134.1 | phage holin family protein | - |
| A6V27_RS16490 () | 3651099..3651599 | + | 501 | WP_063587070.1 | glycoside hydrolase family 104 protein | - |
| A6V27_RS16495 () | 3651596..3652021 | + | 426 | WP_063587071.1 | Rz-like lysis system protein LysB | - |
| A6V27_RS21180 () | 3652117..3652578 | + | 462 | Protein_3205 | phage tail protein | - |
| A6V27_RS16500 () | 3652579..3653028 | + | 450 | WP_063587618.1 | phage virion morphogenesis protein | - |
| A6V27_RS16505 () | 3653291..3653602 | + | 312 | WP_063587072.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| A6V27_RS16510 () | 3653599..3654018 | + | 420 | WP_063587073.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| A6V27_RS16515 () | 3654111..3654848 | + | 738 | WP_145915984.1 | hypothetical protein | - |
| A6V27_RS16520 () | 3654979..3655167 | + | 189 | Protein_3210 | IS481 family transposase ISErsp1 | Transposase |
| A6V27_RS16525 () | 3655376..3656290 | + | 915 | WP_063587075.1 | toll/interleukin-1 receptor domain-containing protein | - |
| A6V27_RS16530 () | 3656460..3656939 | - | 480 | WP_063587619.1 | hypothetical protein | - |
| A6V27_RS16535 () | 3657288..3657606 | + | 319 | Protein_3213 | hypothetical protein | - |
| A6V27_RS16540 () | 3657808..3658191 | + | 384 | WP_063587076.1 | hypothetical protein | - |
| A6V27_RS16545 () | 3658416..3659690 | - | 1275 | WP_063587077.1 | RelA/SpoT domain-containing protein | - |
| A6V27_RS16550 () | 3660008..3660646 | + | 639 | WP_063587078.1 | phage baseplate assembly protein V | - |
| A6V27_RS16555 () | 3660643..3660990 | + | 348 | WP_046457871.1 | GPW/gp25 family protein | - |
| A6V27_RS16560 () | 3660994..3661458 | + | 465 | Protein_3218 | baseplate assembly protein | - |
| A6V27_RS16565 () | 3661557..3661865 | + | 309 | WP_063587079.1 | phage tail assembly protein | - |
| A6V27_RS21185 () | 3661898..3662020 | + | 123 | WP_071842598.1 | GpE family phage tail protein | - |
| A6V27_RS16570 () | 3662010..3664454 | + | 2445 | WP_063587080.1 | phage tail tape measure protein | - |
| A6V27_RS16575 () | 3664467..3664952 | + | 486 | WP_063587081.1 | phage tail protein | - |
| A6V27_RS16580 () | 3664949..3666121 | + | 1173 | WP_063587082.1 | phage late control D family protein | - |
| A6V27_RS21190 () | 3666199..3666417 | + | 219 | WP_071892219.1 | DNA-binding transcriptional regulator | - |
| A6V27_RS16585 () | 3666975..3667412 | + | 438 | WP_046449282.1 | peptidoglycan-binding protein LysM | - |
| A6V27_RS16590 () | 3667566..3668033 | + | 468 | WP_063587083.1 | hypothetical protein | - |
| A6V27_RS16595 () | 3668107..3669270 | - | 1164 | WP_038502234.1 | porin | - |
| A6V27_RS21195 () | 3670144..3670362 | - | 219 | WP_071892222.1 | DNA-binding transcriptional regulator | - |
| A6V27_RS16600 () | 3670434..3671590 | - | 1157 | Protein_3229 | phage late control D family protein | - |
| A6V27_RS16605 () | 3671587..3672072 | - | 486 | WP_063587084.1 | phage tail protein | - |
| A6V27_RS16610 () | 3672085..3674529 | - | 2445 | WP_063587085.1 | phage tail tape measure protein | - |
| A6V27_RS21200 () | 3674519..3674653 | - | 135 | WP_071892224.1 | GpE family phage tail protein | - |
| A6V27_RS16615 () | 3674686..3674994 | - | 309 | WP_063587086.1 | phage tail assembly protein | - |
| A6V27_RS16620 () | 3675054..3675572 | - | 519 | WP_063587087.1 | phage major tail tube protein | - |
| A6V27_RS16625 () | 3675586..3676773 | - | 1188 | WP_063587088.1 | phage tail sheath protein | - |
| A6V27_RS16630 () | 3676911..3677447 | - | 537 | WP_063587089.1 | tail fiber assembly protein | - |
| A6V27_RS16635 () | 3677459..3679333 | - | 1875 | WP_063587090.1 | phage tail protein | - |
| A6V27_RS16640 () | 3679338..3679877 | - | 540 | WP_063587091.1 | phage tail protein I | - |
| A6V27_RS16645 () | 3679870..3680778 | - | 909 | WP_063587092.1 | baseplate assembly protein | - |
| A6V27_RS16650 () | 3680782..3681129 | - | 348 | WP_063587093.1 | GPW/gp25 family protein | - |
| A6V27_RS16655 () | 3681126..3681764 | - | 639 | WP_063587094.1 | phage baseplate assembly protein V | - |
| A6V27_RS16660 () | 3682192..3683838 | + | 1647 | WP_063587095.1 | ATP-binding protein | - |
| A6V27_RS16665 () | 3683838..3684713 | + | 876 | WP_063587096.1 | HNH endonuclease | - |
| A6V27_RS16670 () | 3684911..3685360 | - | 450 | WP_063587097.1 | phage virion morphogenesis protein | - |
| A6V27_RS16675 () | 3685353..3685820 | - | 468 | WP_063587098.1 | phage tail protein | - |
| A6V27_RS16680 () | 3685901..3686341 | - | 441 | WP_063587099.1 | Rz-like lysis system protein LysB | - |
| A6V27_RS16685 () | 3686338..3686838 | - | 501 | WP_063587100.1 | glycoside hydrolase family 104 protein | - |
| A6V27_RS16690 () | 3686838..3687134 | - | 297 | WP_063587101.1 | phage holin family protein | - |
| A6V27_RS16695 () | 3687138..3687341 | - | 204 | WP_063587102.1 | tail protein X | - |
| A6V27_RS16700 () | 3687341..3687826 | - | 486 | WP_063587103.1 | head completion/stabilization protein | - |
| A6V27_RS16705 () | 3687920..3688576 | - | 657 | WP_063587104.1 | hypothetical protein | - |
| A6V27_RS16710 () | 3688579..3689652 | - | 1074 | WP_063587105.1 | phage major capsid protein, P2 family | - |
| A6V27_RS16715 () | 3689700..3690545 | - | 846 | WP_063587106.1 | GPO family capsid scaffolding protein | - |
| A6V27_RS16720 () | 3690688..3692457 | + | 1770 | WP_063587107.1 | terminase ATPase subunit family protein | - |
| A6V27_RS16725 () | 3692457..3693473 | + | 1017 | WP_063587108.1 | phage portal protein | - |
| A6V27_RS16730 () | 3693683..3695872 | - | 2190 | WP_201247295.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| A6V27_RS16735 () | 3697023..3699290 | - | 2268 | WP_063587110.1 | replication endonuclease | - |
| A6V27_RS16740 () | 3699287..3699505 | - | 219 | WP_063587111.1 | TraR/DksA family transcriptional regulator | - |
| A6V27_RS16745 () | 3699575..3700084 | - | 510 | WP_063587112.1 | hypothetical protein | - |
| A6V27_RS21855 () | 3700081..3700257 | - | 177 | WP_201247272.1 | hypothetical protein | - |
| A6V27_RS16750 () | 3700266..3700784 | - | 519 | WP_063587113.1 | phage regulatory CII family protein | - |
| A6V27_RS16755 () | 3700817..3701203 | - | 387 | WP_063587114.1 | hypothetical protein | - |
| A6V27_RS21815 () | 3701316..3701993 | + | 678 | WP_161485315.1 | helix-turn-helix domain containing protein | - |
| A6V27_RS21725 () | 3701966..3702469 | + | 504 | WP_161485316.1 | helix-turn-helix domain containing protein | - |
| A6V27_RS16765 () | 3702453..3702887 | + | 435 | WP_063587115.1 | hypothetical protein | - |
| A6V27_RS16770 () | 3702953..3703366 | + | 414 | WP_063587116.1 | hypothetical protein | - |
| A6V27_RS16775 () | 3703465..3704520 | + | 1056 | WP_063587117.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| - () | 3704588..3704706 | + | 119 | - | - | Antitoxin Detail |
| - () | 3704590..3704693 | - | 104 | - | - | Toxin Detail |
| A6V27_RS16780 () | 3704981..3707611 | - | 2631 | WP_063587118.1 | hypothetical protein | VF |
| A6V27_RS16785 () | 3707580..3708824 | - | 1245 | WP_063587119.1 | membrane integrity lipid transport subunit YebS | - |
| A6V27_RS16790 () | 3709055..3709546 | + | 492 | WP_043493284.1 | GAF domain-containing protein | - |
| A6V27_RS16795 () | 3709648..3710355 | + | 708 | WP_025801078.1 | RNA chaperone ProQ | - |
| A6V27_RS16800 () | 3710375..3712405 | + | 2031 | WP_063587120.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|