MGE detailed information
MGE type: Mobilizable plasmid MGE length: 66029 bp
Accession: NZ_CP015242 Location: 1..66029 Organism: Escherichia coli strain 2013C-4465 Replicon: plasmid unnamed1
Accession: NZ_CP015242 Location: 1..66029 Organism: Escherichia coli strain 2013C-4465 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5955_RS27185 () | 705..992 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| A5955_RS27190 () | 1017..1223 | - | 207 | WP_000275846.1 | hypothetical protein | - |
| A5955_RS27200 () | 1722..1913 | - | 192 | WP_001024835.1 | hypothetical protein | - |
| A5955_RS27205 () | 1910..2332 | - | 423 | WP_000271758.1 | DUF1380 family protein | - |
| A5955_RS27210 () | 2379..2657 | - | 279 | WP_072131700.1 | antirestriction protein | - |
| A5955_RS31700 () | 3197..3973 | - | 777 | Protein_6 | hypothetical protein | - |
| A5955_RS27225 () | 4019..4453 | - | 435 | WP_000274489.1 | DUF1380 family protein | - |
| A5955_RS27230 () | 4465..4686 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| A5955_RS27235 () | 4687..5370 | - | 684 | WP_000085942.1 | DNA methylase | - |
| A5955_RS30685 () | 5447..5752 | - | 306 | WP_032325408.1 | hypothetical protein | - |
| A5955_RS27245 () | 5756..6172 | - | 417 | Protein_11 | DUF1281 domain-containing protein | - |
| A5955_RS27250 () | 6203..7214 | + | 1012 | Protein_12 | DUF4113 domain-containing protein | - |
| A5955_RS27255 () | 7355..8317 | - | 963 | WP_000756329.1 | ParB/RepB/Spo0J family partition protein | - |
| A5955_RS27260 () | 8314..9519 | - | 1206 | WP_000817637.1 | Plasmid partition protein A | VF |
| A5955_RS27265 () | 9908..10159 | + | 252 | WP_001132893.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| A5955_RS27270 () | 10156..10443 | + | 288 | WP_001270421.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A5955_RS29740 () | 10445..10850 | + | 406 | Protein_17 | DDE-type integrase/transposase/recombinase | - |
| A5955_RS27280 () | 11496..12473 | + | 978 | WP_000361616.1 | RepB family plasmid replication initiator protein | - |
| A5955_RS27285 () | 12757..13497 | - | 741 | WP_001066926.1 | IS91 family transposase ISMno23 | Transposase |
| A5955_RS27290 () | 13621..13761 | - | 141 | Protein_20 | serine/threonine protein kinase | - |
| A5955_RS31495 () | 13812..13973 | + | 162 | Protein_21 | epoxyqueuosine reductase QueH | - |
| A5955_RS27295 () | 14284..14658 | - | 375 | WP_001368887.1 | hypothetical protein | - |
| A5955_RS27300 () | 14861..15040 | + | 180 | WP_000526857.1 | hypothetical protein | - |
| A5955_RS27305 () | 15289..15726 | + | 438 | WP_000273581.1 | hypothetical protein | - |
| A5955_RS27315 () | 15829..17042 | + | 1214 | WP_165382802.1 | IS3 family transposase IS629 | Transposase |
| A5955_RS29765 () | 17597..17880 | - | 284 | Protein_26 | YkgJ family cysteine cluster protein | - |
| A5955_RS27330 () | 18029..19354 | - | 1326 | WP_001025657.1 | hypothetical protein | VF |
| A5955_RS27335 () | 20077..20741 | - | 665 | Protein_28 | tyrosine-type recombinase/integrase | - |
| A5955_RS27340 () | 20878..21621 | - | 744 | Protein_29 | IS21 family transposase IS100kyp | Transposase |
| A5955_RS27345 () | 21707..22414 | - | 708 | Protein_30 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| A5955_RS29770 () | 22395..22835 | - | 441 | WP_072141484.1 | recombinase family protein | - |
| A5955_RS27350 () | 22917..24455 | - | 1539 | WP_000099186.1 | IS66 family transposase ISEc22 | Transposase |
| A5955_RS27355 () | 24504..24851 | - | 348 | WP_000612624.1 | IS66 family transposase ISKpn24 | Transposase |
| A5955_RS27360 () | 24848..25252 | - | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| A5955_RS27365 () | 25330..28308 | - | 2979 | WP_000124031.1 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| A5955_RS27370 () | 28463..29104 | + | 642 | WP_000470626.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| A5955_RS27375 () | 29224..29814 | + | 591 | WP_000194567.1 | hypothetical protein | - |
| A5955_RS27380 () | 29832..30179 | - | 348 | WP_000142440.1 | hypothetical protein | - |
| A5955_RS27385 () | 30308..30643 | + | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| A5955_RS27390 () | 30665..32545 | - | 1881 | WP_001283342.1 | colicin 1A | - |
| A5955_RS27395 () | 32824..34170 | - | 1347 | WP_001132032.1 | hypothetical protein | - |
| A5955_RS27400 () | 34524..35117 | + | 594 | WP_000517696.1 | hypothetical protein | - |
| A5955_RS27405 () | 35399..35986 | - | 588 | WP_001418189.1 | serine acetyltransferase | - |
| A5955_RS27410 () | 36286..36627 | + | 342 | WP_000578011.1 | hypothetical protein | - |
| A5955_RS27415 () | 36823..37104 | - | 282 | WP_000969997.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A5955_RS27420 () | 37101..37370 | - | 270 | WP_000079946.1 | hypothetical protein | Antitoxin Detail |
| A5955_RS31705 () | 37425..37583 | - | 159 | WP_000829588.1 | hypothetical protein | - |
| A5955_RS31710 () | 38285..38392 | - | 108 | Protein_48 | incFII family plasmid replication initiator RepA | - |
| A5955_RS27430 () | 38415..38663 | - | 249 | WP_000083841.1 | replication regulatory protein RepA | - |
| A5955_RS31505 () | 38892..39185 | - | 294 | Protein_50 | hypothetical protein | - |
| A5955_RS30715 () | 39484..39699 | - | 216 | Protein_51 | IS3 family transposase IS1203 | Transposase |
| A5955_RS27440 () | 39774..40175 | - | 402 | WP_001222321.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| A5955_RS27445 () | 40269..41102 | - | 834 | WP_000088803.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| A5955_RS27450 () | 41154..41669 | - | 516 | WP_000998852.1 | Type II secretion system protein M | VF |
| A5955_RS27455 () | 41656..42828 | - | 1173 | WP_071526091.1 | Type II secretion system protein L | VF |
| A5955_RS27460 () | 42867..43844 | - | 978 | WP_000842183.1 | Putative type II secretion system protein K | VF |
| A5955_RS27465 () | 43841..44440 | - | 600 | WP_000082784.1 | Type II secretion system protein J | VF |
| A5955_RS27470 () | 44437..44784 | - | 348 | WP_001420206.1 | Type II secretion system protein I | VF |
| A5955_RS27475 () | 44799..45350 | - | 552 | WP_000082928.1 | type II secretion system minor pseudopilin GspH | - |
| A5955_RS27480 () | 45347..45781 | - | 435 | WP_001231213.1 | Type II secretion system protein G | VF |
| A5955_RS27485 () | 45812..47035 | - | 1224 | WP_001173149.1 | Type II secretion system protein F | VF |
| A5955_RS27490 () | 47037..48539 | - | 1503 | WP_001418198.1 | Type II secretion system protein E | VF |
| A5955_RS27495 () | 48536..50506 | - | 1971 | WP_013009342.1 | Type II secretion system protein D | VF |
| A5955_RS27500 () | 50507..51382 | - | 876 | WP_001368871.1 | Type II secretion system protein C | VF |
| A5955_RS27505 () | 51466..54126 | - | 2661 | WP_000770129.1 | Metalloprotease StcE | VF |
| A5955_RS29805 () | 54579..55252 | - | 674 | Protein_66 | DDE-type integrase/transposase/recombinase | - |
| A5955_RS27525 () | 55329..55472 | + | 144 | Protein_67 | IS3 family transposase IS911 | Transposase |
| A5955_RS31510 () | 55475..55618 | + | 144 | Protein_68 | IS3 family transposase | - |
| A5955_RS27530 () | 55981..56375 | - | 395 | Protein_69 | thermonuclease family protein | - |
| A5955_RS27535 () | 56621..56826 | - | 206 | Protein_70 | hypothetical protein | - |
| A5955_RS27540 () | 56961..57521 | - | 561 | WP_000139371.1 | fertility inhibition protein FinO | - |
| A5955_RS27545 () | 57576..58322 | - | 747 | WP_000205758.1 | conjugal transfer pilus acetylase TraX | - |
| A5955_RS27550 () | 58342..58815 | - | 474 | Protein_73 | DNA helicase | - |
| A5955_RS27555 () | 58803..59549 | - | 747 | Protein_74 | conjugative transfer relaxase/helicase TraI | - |
| A5955_RS27560 () | 59580..60080 | - | 501 | Protein_75 | type-F conjugative transfer system secretin TraK | - |
| A5955_RS27565 () | 60067..60633 | - | 567 | WP_000399770.1 | type IV conjugative transfer system protein TraE | - |
| A5955_RS27570 () | 60655..60966 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| A5955_RS27575 () | 60981..61345 | - | 365 | Protein_78 | type IV conjugative transfer system pilin TraA | - |
| A5955_RS27580 () | 61378..61773 | - | 396 | WP_013009335.1 | conjugal transfer relaxosome protein TraY | - |
| A5955_RS31515 () | 61872..62561 | - | 690 | Protein_80 | conjugal transfer transcriptional regulator TraJ | - |
| A5955_RS27590 () | 62748..63131 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| A5955_RS27595 () | 63464..64054 | + | 591 | WP_013009334.1 | hypothetical protein | VF |
| A5955_RS27600 () | 64175..65515 | - | 1341 | WP_001130323.1 | IS4 family transposase ISCro3 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|