MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 120297 bp
Accession: NZ_CP015229 Location: 1038739..1159035 Organism: Escherichia coli strain 06-00048 Replicon: chromosome
Accession: NZ_CP015229 Location: 1038739..1159035 Organism: Escherichia coli strain 06-00048 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJ11_RS06735 () | 1035506..1035724 | - | 219 | WP_001040187.1 | translation initiation factor IF-1 | - |
| GJ11_RS06740 () | 1036009..1036713 | - | 705 | WP_001241678.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| GJ11_RS06745 () | 1036755..1038476 | - | 1722 | WP_065226471.1 | cysteine/glutathione ABC transporter ATP-binding protein/permease CydC | - |
| GJ11_RS06750 () | 1038477..1040243 | - | 1767 | WP_001589960.1 | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | - |
| GJ11_RS06755 () | 1040366..1041331 | - | 966 | WP_065226472.1 | thioredoxin-disulfide reductase | - |
| GJ11_RS06760 () | 1041875..1042369 | + | 495 | WP_000228473.1 | leucine-responsive transcriptional regulator Lrp | - |
| GJ11_RS06765 () | 1042504..1046337 | + | 3834 | WP_065226473.1 | DNA translocase FtsK | - |
| GJ11_RS06770 () | 1046490..1047101 | + | 612 | WP_065226474.1 | outer membrane lipoprotein chaperone LolA | - |
| GJ11_RS06775 () | 1047112..1048455 | + | 1344 | WP_065226475.1 | replication-associated recombination protein RarA | - |
| GJ11_RS06780 () | 1048546..1049838 | + | 1293 | WP_000886683.1 | serine--tRNA ligase | - |
| GJ11_RS06785 () | 1050077..1052520 | + | 2444 | Protein_941 | dimethylsulfoxide reductase subunit A | - |
| GJ11_RS06790 () | 1052531..1053148 | + | 618 | WP_000213098.1 | dimethylsulfoxide reductase subunit B | - |
| GJ11_RS06795 () | 1053150..1054013 | + | 864 | WP_065226476.1 | dimethyl sulfoxide reductase anchor subunit DmsC | - |
| GJ11_RS06800 () | 1054049..1054675 | - | 627 | WP_000165876.1 | hydrolase | - |
| GJ11_RS06805 () | 1054990..1056138 | + | 1149 | WP_000109295.1 | MFS transporter | - |
| GJ11_RS06810 () | 1056348..1057778 | + | 1431 | WP_065226477.1 | amino acid permease | - |
| GJ11_RS06815 () | 1058876..1061224 | + | 2349 | WP_065226478.1 | CHASE9 sensor domain-containing protein | - |
| GJ11_RS06820 () | 1061229..1062569 | + | 1341 | WP_065226479.1 | GGDEF domain-containing protein | - |
| GJ11_RS06825 () | 1062654..1064768 | + | 2115 | WP_065226480.1 | UDP-forming cellulose synthase catalytic subunit | - |
| GJ11_RS06830 () | 1064813..1067134 | + | 2322 | WP_077884146.1 | cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB | - |
| GJ11_RS06835 () | 1067247..1070354 | + | 3108 | WP_065226481.1 | cellulose biosynthesis protein BcsC | - |
| GJ11_RS06840 () | 1070489..1071229 | - | 741 | WP_000111043.1 | pyruvate formate lyase 1-activating protein | - |
| GJ11_RS06845 () | 1071421..1073703 | - | 2283 | WP_001292812.1 | formate C-acetyltransferase | - |
| GJ11_RS06850 () | 1073758..1074615 | - | 858 | WP_000642546.1 | formate transporter FocA | - |
| GJ11_RS06855 () | 1075021..1076781 | - | 1761 | WP_065226482.1 | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO | - |
| GJ11_RS06860 () | 1076911..1077603 | + | 693 | WP_000642852.1 | DUF421 domain-containing protein | - |
| GJ11_RS06865 () | 1077802..1078890 | + | 1089 | WP_065226483.1 | 3-phosphoserine/phosphohydroxythreonine transaminase | - |
| GJ11_RS06870 () | 1078961..1080244 | + | 1284 | WP_065226484.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| GJ11_RS06875 () | 1080413..1081177 | + | 765 | WP_010344473.1 | metallopeptidase YcaL | - |
| GJ11_RS06880 () | 1081350..1082033 | + | 684 | WP_000125016.1 | (d)CMP kinase | - |
| GJ11_RS06885 () | 1082144..1083817 | + | 1674 | WP_000140327.1 | 30S ribosomal protein S1 | - |
| GJ11_RS06890 () | 1083977..1084261 | + | 285 | WP_000167336.1 | integration host factor subunit beta | - |
| GJ11_RS06895 () | 1084468..1086732 | + | 2265 | WP_065226485.1 | ComEC family protein | - |
| GJ11_RS06900 () | 1086769..1088517 | + | 1749 | WP_000551266.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GJ11_RS06905 () | 1088514..1089500 | + | 987 | WP_065226486.1 | Tetraacyldisaccharide 4'-kinase | VF |
| GJ11_RS06910 () | 1089537..1090769 | + | 1233 | WP_065226487.1 | winged helix-turn-helix domain-containing protein | - |
| GJ11_RS06915 () | 1090821..1091003 | + | 183 | WP_000350058.1 | protein YcaR | - |
| GJ11_RS06920 () | 1091000..1091746 | + | 747 | WP_000011612.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| GJ11_RS06925 () | 1091900..1092793 | + | 894 | WP_000436922.1 | YcbJ family phosphotransferase | - |
| GJ11_RS06930 () | 1092770..1093549 | - | 780 | WP_065226488.1 | envelope biogenesis factor ElyC | - |
| GJ11_RS06935 () | 1093685..1094470 | + | 786 | WP_001298300.1 | tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM | - |
| GJ11_RS06940 () | 1094467..1095789 | + | 1323 | WP_001288850.1 | chromosome partition protein MukF | - |
| GJ11_RS06945 () | 1095770..1096474 | + | 705 | WP_001295931.1 | chromosome partition protein MukE | - |
| GJ11_RS06950 () | 1096474..1100934 | + | 4461 | WP_001578100.1 | chromosome partition protein MukB | - |
| GJ11_RS06955 () | 1101195..1103041 | + | 1847 | Protein_975 | L,D-transpeptidase | - |
| GJ11_RS06960 () | 1103222..1103770 | + | 549 | WP_001295932.1 | YcbK family protein | - |
| GJ11_RS06965 () | 1103797..1104444 | + | 648 | WP_065226489.1 | hydroxyacylglutathione hydrolase GloC | - |
| GJ11_RS06970 () | 1104495..1105685 | - | 1191 | WP_000462687.1 | aspartate transaminase | - |
| GJ11_RS06975 () | 1105870..1106958 | - | 1089 | WP_071906080.1 | porin OmpF | - |
| GJ11_RS06980 () | 1107559..1108959 | - | 1401 | WP_000117881.1 | asparagine--tRNA ligase | - |
| GJ11_RS06985 () | 1109128..1110330 | - | 1203 | WP_065226490.1 | nicotinate phosphoribosyltransferase | - |
| GJ11_RS06990 () | 1110596..1113208 | + | 2613 | WP_065226491.1 | aminopeptidase N | - |
| GJ11_RS06995 () | 1113250..1114017 | - | 768 | WP_001090506.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GJ11_RS07000 () | 1114014..1114805 | - | 792 | WP_000235189.1 | aliphatic sulfonate ABC transporter permease SsuC | - |
| GJ11_RS07005 () | 1114817..1115962 | - | 1146 | WP_065226492.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| GJ11_RS07010 () | 1115959..1116918 | - | 960 | WP_065226493.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| GJ11_RS07015 () | 1116911..1117486 | - | 576 | WP_001263932.1 | NADPH-dependent FMN reductase | - |
| GJ11_RS07020 () | 1117723..1118733 | + | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| GJ11_RS07025 () | 1118907..1119449 | + | 543 | WP_065226494.1 | cell division protein ZapC | - |
| GJ11_RS07030 () | 1119446..1120555 | - | 1110 | WP_065226495.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| GJ11_RS07035 () | 1120799..1122907 | + | 2109 | WP_001086527.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| GJ11_RS07040 () | 1122919..1124826 | + | 1908 | WP_000053080.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| GJ11_RS07045 () | 1124956..1126209 | + | 1254 | WP_000333170.1 | membrane integrity-associated transporter subunit PqiA | - |
| GJ11_RS07050 () | 1126214..1127854 | + | 1641 | WP_000445541.1 | hypothetical protein | VF |
| GJ11_RS07055 () | 1127851..1128414 | + | 564 | WP_000759110.1 | membrane integrity-associated transporter subunit PqiC | - |
| GJ11_RS07060 () | 1128670..1128837 | + | 168 | WP_000828648.1 | ribosome modulation factor | - |
| GJ11_RS07065 () | 1128907..1129425 | - | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| GJ11_RS07070 () | 1129494..1131254 | - | 1761 | WP_000156477.1 | Lon protease family protein | - |
| GJ11_RS07075 () | 1131440..1131892 | + | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| GJ11_RS07080 () | 1131968..1133020 | - | 1053 | WP_000750418.1 | hypothetical protein | VF |
| GJ11_RS07085 () | 1133377..1133886 | - | 510 | WP_000288705.1 | cell division inhibitor SulA | - |
| GJ11_RS07090 () | 1134105..1134734 | + | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | - |
| GJ11_RS07095 () | 1134697..1136859 | - | 2163 | WP_123007690.1 | TIGR01666 family membrane protein | - |
| GJ11_RS07100 () | 1136869..1137315 | - | 447 | WP_001261236.1 | YccF domain-containing protein | - |
| GJ11_RS07105 () | 1137438..1139492 | + | 2055 | WP_065226496.1 | DNA helicase IV | - |
| GJ11_RS07110 () | 1139524..1139982 | - | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| GJ11_RS07115 () | 1140078..1140740 | - | 663 | WP_000847791.1 | DUF2057 family protein | - |
| GJ11_RS07120 () | 1140913..1141326 | + | 414 | WP_000665217.1 | CoA-binding protein | - |
| GJ11_RS07125 () | 1141371..1141688 | - | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| GJ11_RS07130 () | 1141746..1142936 | - | 1191 | WP_065226498.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| GJ11_RS07135 () | 1143031..1143309 | + | 279 | WP_065226499.1 | acylphosphatase | - |
| GJ11_RS07140 () | 1143306..1143635 | - | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| GJ11_RS07145 () | 1143726..1144385 | - | 660 | WP_000375136.1 | FtsH protease modulator YccA | - |
| GJ11_RS07150 () | 1144793..1145812 | - | 1020 | WP_001372523.1 | hypothetical protein ; Integrase | Integrase |
| GJ11_RS07155 () | 1145781..1146032 | - | 252 | WP_000273158.1 | DUF4224 domain-containing protein | - |
| GJ11_RS07160 () | 1146099..1148549 | - | 2451 | WP_065226500.1 | exonuclease | - |
| GJ11_RS07165 () | 1148640..1148831 | - | 192 | WP_064236776.1 | DUF1482 family protein | - |
| GJ11_RS07170 () | 1148828..1149016 | - | 189 | WP_065226501.1 | cell division inhibition protein DicB | - |
| GJ11_RS07175 () | 1149574..1149807 | + | 234 | WP_065226502.1 | hypothetical protein | - |
| GJ11_RS07180 () | 1149785..1150192 | - | 408 | WP_065226503.1 | hypothetical protein | - |
| GJ11_RS07185 () | 1150208..1150423 | - | 216 | WP_065226504.1 | hypothetical protein | - |
| GJ11_RS07190 () | 1150516..1150716 | + | 201 | WP_001092153.1 | hypothetical protein | - |
| GJ11_RS07195 () | 1151117..1151404 | - | 288 | WP_065226507.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GJ11_RS07200 () | 1151405..1151596 | - | 192 | WP_042105938.1 | hypothetical protein | Antitoxin Detail |
| GJ11_RS07205 () | 1151632..1152027 | - | 396 | WP_042105939.1 | helix-turn-helix domain-containing protein | - |
| GJ11_RS07210 () | 1152058..1152276 | - | 219 | WP_065228201.1 | Cro/Cl family transcriptional regulator | - |
| GJ11_RS07215 () | 1152532..1152819 | + | 288 | WP_042105941.1 | helix-turn-helix domain-containing protein | - |
| GJ11_RS07220 () | 1152816..1153241 | + | 426 | WP_065226508.1 | Rha family transcriptional regulator | - |
| GJ11_RS07225 () | 1153264..1154232 | + | 969 | WP_071906084.1 | helix-turn-helix domain-containing protein | - |
| GJ11_RS07230 () | 1154275..1154676 | + | 402 | WP_040091020.1 | DUF977 family protein | - |
| GJ11_RS07235 () | 1154700..1154981 | + | 282 | WP_047088604.1 | DNA-binding protein | - |
| GJ11_RS07240 () | 1154978..1155223 | + | 246 | WP_000699804.1 | hypothetical protein | - |
| GJ11_RS07245 () | 1155198..1155686 | + | 489 | WP_000004205.1 | class I SAM-dependent methyltransferase | - |
| GJ11_RS07250 () | 1155679..1155933 | + | 255 | WP_065226509.1 | hypothetical protein | - |
| GJ11_RS07255 () | 1155926..1156237 | + | 312 | WP_065226510.1 | hypothetical protein | - |
| GJ11_RS07260 () | 1156369..1156836 | + | 468 | WP_016241028.1 | hypothetical protein | - |
| GJ11_RS07265 () | 1156838..1157029 | + | 192 | WP_065226511.1 | hypothetical protein | - |
| GJ11_RS07270 () | 1157032..1157244 | + | 213 | WP_065226512.1 | hypothetical protein | - |
| GJ11_RS07275 () | 1157244..1157639 | + | 396 | WP_044809950.1 | hypothetical protein | - |
| GJ11_RS07280 () | 1157844..1158143 | - | 300 | WP_000220600.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GJ11_RS07285 () | 1158149..1158406 | - | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| GJ11_RS07290 () | 1158542..1158820 | + | 279 | WP_065228203.1 | hypothetical protein | - |
| GJ11_RS07295 () | 1158822..1159880 | + | 1059 | WP_065226513.1 | DUF968 domain-containing protein | - |
| GJ11_RS07300 () | 1159881..1160261 | + | 381 | WP_065226514.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GJ11_RS07305 () | 1160258..1161079 | + | 822 | WP_065226515.1 | antitermination protein | - |
| GJ11_RS07310 () | 1161306..1161503 | + | 198 | WP_065226516.1 | TrmB family transcriptional regulator | - |
| GJ11_RS07315 () | 1161640..1162353 | + | 714 | WP_097310795.1 | helix-turn-helix domain-containing protein | - |
| GJ11_RS07335 () | 1162805..1163230 | + | 426 | WP_000466940.1 | tellurite/colicin resistance protein | - |
| GJ11_RS07340 () | 1163227..1163379 | + | 153 | WP_000833650.1 | DUF3927 family protein | - |
| GJ11_RS07345 () | 1163492..1163707 | + | 216 | WP_000839574.1 | class II holin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|