MGE detailed information
MGE type: Conjugative plasmid MGE length: 140936 bp
Accession: NZ_CP013340 Location: 1..140936 Organism: Raoultella ornithinolytica strain Yangling I2 Replicon: plasmid pKPYL2
Accession: NZ_CP013340 Location: 1..140936 Organism: Raoultella ornithinolytica strain Yangling I2 Replicon: plasmid pKPYL2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN83_RS26260 () | 1566..2849 | + | 1284 | WP_004099051.1 | glucose-1-phosphate adenylyltransferase | - |
| ATN83_RS26265 () | 2938..4371 | + | 1434 | WP_009653212.1 | glycogen synthase GlgA | - |
| ATN83_RS26270 () | 4542..5810 | - | 1269 | WP_019705993.1 | ISL3 family transposase ISKpn25 | Transposase |
| ATN83_RS26275 () | 5815..9072 | - | 3258 | WP_019705992.1 | type I restriction endonuclease subunit R | - |
| ATN83_RS26280 () | 9073..10347 | - | 1275 | WP_032436768.1 | restriction endonuclease subunit S | - |
| ATN83_RS26285 () | 10344..12302 | - | 1959 | WP_064357914.1 | type I restriction-modification system subunit M | - |
| ATN83_RS26290 () | 12441..14132 | + | 1692 | WP_081042496.1 | glycogen/starch/alpha-glucan family phosphorylase | - |
| ATN83_RS28355 () | 14084..14329 | + | 246 | WP_009653206.1 | phosphoglucomutase | - |
| ATN83_RS26300 () | 14454..15020 | + | 567 | WP_064357916.1 | LuxR family transcriptional regulator | - |
| ATN83_RS26305 () | 15355..15633 | + | 279 | WP_004197671.1 | hypothetical protein | - |
| ATN83_RS28645 () | 15661..15852 | - | 192 | Protein_11 | hypothetical protein | - |
| ATN83_RS26310 () | 15873..16793 | - | 921 | Protein_12 | ISNCY family transposase ISKpn21 | Transposase |
| ATN83_RS26315 () | 16932..17564 | + | 633 | WP_001567369.1 | hypothetical protein | - |
| ATN83_RS26320 () | 17593..18996 | - | 1404 | WP_001567368.1 | ISNCY family transposase ISKpn21 | Transposase |
| ATN83_RS26325 () | 19268..19702 | - | 435 | WP_001567367.1 | cell envelope integrity protein TolA | - |
| ATN83_RS26330 () | 19749..20297 | - | 549 | WP_001567366.1 | thioredoxin fold domain-containing protein | - |
| ATN83_RS26340 () | 20791..21099 | + | 309 | WP_064357917.1 | hypothetical protein | - |
| ATN83_RS26350 () | 22324..22617 | - | 294 | Protein_18 | DNA-binding protein | - |
| ATN83_RS26365 () | 23833..24114 | + | 282 | Protein_20 | IS5 family transposase IS903B | Transposase |
| ATN83_RS26370 () | 24787..25044 | - | 258 | WP_064343465.1 | hypothetical protein | - |
| ATN83_RS26375 () | 25667..26314 | - | 648 | Protein_22 | IS5 family transposase ISEc68 | Transposase |
| ATN83_RS26380 () | 26379..27083 | + | 705 | WP_064357918.1 | IS6 family transposase IS26 | Transposase |
| ATN83_RS26385 () | 27338..27838 | + | 501 | WP_021313689.1 | non-heme ferritin-like protein | - |
| ATN83_RS26390 () | 27986..28966 | - | 981 | WP_016947617.1 | IS5 family transposase ISKpn26 | Transposase |
| ATN83_RS26395 () | 29244..29525 | - | 282 | WP_000780222.1 | helix-turn-helix transcriptional regulator | - |
| ATN83_RS26400 () | 29506..29835 | - | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ATN83_RS26405 () | 30881..31903 | - | 1023 | WP_001572362.1 | IS110 family transposase IS1618 | Transposase |
| ATN83_RS26410 () | 32056..32760 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ATN83_RS26415 () | 33368..33688 | + | 321 | WP_001137910.1 | DUF134 domain-containing protein | - |
| ATN83_RS26420 () | 33663..34124 | + | 462 | WP_064357920.1 | dinitrogenase iron-molybdenum cofactor | - |
| ATN83_RS26425 () | 34285..34722 | + | 438 | WP_016241611.1 | PaaI family thioesterase | - |
| ATN83_RS26430 () | 34837..35313 | + | 477 | WP_000043177.1 | hypothetical protein | VF |
| ATN83_RS26435 () | 35618..35968 | - | 351 | WP_000928911.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| ATN83_RS26440 () | 36130..37787 | + | 1658 | Protein_35 | FAD-dependent oxidoreductase | - |
| ATN83_RS26445 () | 38033..38497 | + | 465 | WP_001243598.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| ATN83_RS26450 () | 38777..39301 | - | 525 | Protein_37 | IS5 family transposase ISKpn26 | Transposase |
| ATN83_RS26455 () | 39337..40776 | - | 1440 | Protein_38 | IS66 family transposase ISKox1 | Transposase |
| ATN83_RS26460 () | 40841..41545 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ATN83_RS26465 () | 41631..41771 | + | 141 | WP_045286941.1 | helix-turn-helix domain-containing protein | - |
| ATN83_RS26470 () | 41869..42285 | - | 417 | WP_021312768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| ATN83_RS26475 () | 42282..42512 | - | 231 | WP_021312767.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| ATN83_RS28790 () | 42566..42970 | + | 405 | Protein_43 | hypothetical protein | - |
| ATN83_RS26485 () | 43140..43358 | + | 219 | WP_006788213.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ATN83_RS26490 () | 43360..43665 | + | 306 | WP_006788214.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ATN83_RS28655 () | 44351..44836 | + | 486 | Protein_46 | hypothetical protein | - |
| ATN83_RS26500 () | 45072..45866 | + | 795 | WP_016240356.1 | site-specific integrase | - |
| ATN83_RS28360 () | 46306..46485 | - | 180 | WP_006788217.1 | hypothetical protein | - |
| ATN83_RS26505 () | 46605..47231 | - | 627 | WP_016946792.1 | Chromosome-partitioning ATPase Soj | VF |
| ATN83_RS26510 () | 47808..48683 | - | 876 | WP_004098982.1 | RepB family plasmid replication initiator protein | - |
| ATN83_RS26515 () | 49095..50366 | - | 1272 | WP_064357922.1 | Y-family DNA polymerase | - |
| ATN83_RS26520 () | 50366..50797 | - | 432 | WP_006796638.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ATN83_RS26525 () | 50933..51630 | + | 698 | Protein_53 | IS1 family transposase IS1X2 | Transposase |
| ATN83_RS26530 () | 52240..52488 | + | 249 | WP_064357924.1 | helix-turn-helix domain-containing protein | - |
| ATN83_RS26535 () | 52573..53044 | + | 472 | Protein_55 | hypothetical protein | - |
| ATN83_RS26540 () | 53174..53851 | + | 678 | WP_096807527.1 | tyrosine-type recombinase/integrase | - |
| ATN83_RS26545 () | 54093..55067 | + | 975 | WP_032440558.1 | plasmid segregation protein ParM | - |
| ATN83_RS26550 () | 55070..55513 | + | 444 | WP_032440559.1 | plasmid partitioning/stability family protein | - |
| ATN83_RS26555 () | 55955..56200 | + | 246 | WP_032440579.1 | hypothetical protein | - |
| ATN83_RS26560 () | 56193..56690 | + | 498 | WP_032440560.1 | hypothetical protein | - |
| ATN83_RS26565 () | 56808..57257 | + | 450 | WP_032440561.1 | Mov34/MPN/PAD-1 family protein | - |
| ATN83_RS26570 () | 57302..57568 | + | 267 | WP_023285835.1 | helix-turn-helix domain-containing protein | - |
| ATN83_RS26575 () | 58211..58390 | + | 180 | WP_023285836.1 | hypothetical protein | - |
| ATN83_RS26580 () | 58463..59323 | + | 861 | WP_064357927.1 | DUF4942 domain-containing protein | - |
| ATN83_RS26585 () | 59513..59851 | + | 339 | WP_004187354.1 | hypothetical protein | - |
| ATN83_RS28155 () | 59949..60179 | + | 231 | WP_070083114.1 | hypothetical protein | - |
| ATN83_RS26595 () | 60799..61209 | + | 411 | WP_004187342.1 | DUF1380 family protein | - |
| ATN83_RS26600 () | 61271..61576 | + | 306 | WP_004187339.1 | hypothetical protein | - |
| ATN83_RS26605 () | 61777..62217 | + | 441 | WP_004187338.1 | antirestriction protein | - |
| ATN83_RS26610 () | 62261..62545 | + | 285 | WP_032440566.1 | hypothetical protein | - |
| ATN83_RS26615 () | 62702..62935 | + | 234 | WP_032440567.1 | hypothetical protein | - |
| ATN83_RS26620 () | 62989..63309 | + | 321 | WP_064357929.1 | hypothetical protein | - |
| ATN83_RS26625 () | 63601..64020 | - | 420 | WP_058674280.1 | hypothetical protein | - |
| ATN83_RS26630 () | 64310..64621 | + | 312 | WP_016162079.1 | hypothetical protein | - |
| ATN83_RS26635 () | 64624..66552 | + | 1929 | WP_064357930.1 | Protein TraI | Relaxase |
| ATN83_RS26640 () | 66702..67655 | - | 954 | WP_064357932.1 | Recombination-promoting nuclease RpnA | VF |
| ATN83_RS26645 () | 67839..69533 | - | 1695 | WP_064357933.1 | hybrid sensor histidine kinase/response regulator | - |
| ATN83_RS26650 () | 69530..70024 | - | 495 | WP_064357935.1 | molybdopterin-dependent oxidoreductase | - |
| ATN83_RS26655 () | 70017..71003 | - | 987 | WP_070083115.1 | hypothetical protein | - |
| ATN83_RS26660 () | 71006..71848 | - | 843 | WP_032440572.1 | response regulator | - |
| ATN83_RS26665 () | 72458..72685 | + | 228 | WP_032440573.1 | hypothetical protein | - |
| ATN83_RS28660 () | 73036..73404 | + | 369 | WP_136129316.1 | hypothetical protein | - |
| ATN83_RS26670 () | 73417..73896 | + | 480 | WP_064357937.1 | hypothetical protein | VF |
| ATN83_RS26675 () | 73958..74386 | + | 429 | WP_087638882.1 | DotD/TraH family lipoprotein | - |
| ATN83_RS26680 () | 74383..75201 | + | 819 | WP_064357938.1 | hypothetical protein | VF |
| ATN83_RS26685 () | 75179..76366 | + | 1188 | WP_081042498.1 | putative protein YggR | VF |
| ATN83_RS26690 () | 76363..76629 | + | 267 | WP_032440577.1 | hypothetical protein | VF |
| ATN83_RS26695 () | 76647..79862 | + | 3216 | WP_064357941.1 | hypothetical protein | - |
| ATN83_RS26700 () | 79896..80249 | + | 354 | WP_064357942.1 | hypothetical protein | - |
| ATN83_RS26705 () | 80287..80991 | + | 705 | WP_069217503.1 | DotI/IcmL/TraM family protein | - |
| ATN83_RS26710 () | 81002..82105 | + | 1104 | WP_081042499.1 | hypothetical protein | VF |
| ATN83_RS26715 () | 82109..83437 | + | 1329 | WP_064357943.1 | conjugal transfer protein TraO | - |
| ATN83_RS26720 () | 83444..84163 | + | 720 | WP_064357945.1 | conjugal transfer protein TraP | - |
| ATN83_RS26725 () | 84173..84706 | + | 534 | WP_064357947.1 | conjugal transfer protein TraQ | - |
| ATN83_RS26730 () | 84762..85163 | + | 402 | WP_032440588.1 | hypothetical protein | - |
| ATN83_RS26735 () | 85207..85770 | + | 564 | WP_064357949.1 | hypothetical protein | - |
| ATN83_RS26740 () | 85780..88827 | + | 3048 | WP_064357951.1 | hypothetical protein | - |
| ATN83_RS26745 () | 88837..90033 | + | 1197 | WP_064357952.1 | conjugal transfer protein TraW | - |
| ATN83_RS26750 () | 90030..90611 | + | 582 | WP_064357954.1 | conjugal transfer protein TraX | - |
| ATN83_RS26755 () | 90653..92797 | + | 2145 | WP_064357955.1 | DotA/TraY family protein | - |
| ATN83_RS26760 () | 92863..93486 | + | 624 | WP_064357957.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ATN83_RS26765 () | 93588..95006 | + | 1419 | WP_071887238.1 | hypothetical protein | - |
| ATN83_RS26770 () | 95017..96108 | + | 1092 | WP_064357959.1 | thioredoxin fold domain-containing protein | - |
| ATN83_RS26775 () | 96110..98302 | + | 2193 | WP_064357960.1 | hypothetical protein | VF |
| ATN83_RS26780 () | 98348..98881 | + | 534 | WP_096807525.1 | Phospholipase D | VF |
| ATN83_RS28665 () | 98893..99144 | + | 252 | WP_064357964.1 | hypothetical protein | - |
| ATN83_RS26790 () | 99469..100473 | - | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| ATN83_RS26795 () | 100552..103518 | - | 2967 | WP_015065644.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| ATN83_RS26800 () | 103677..103967 | + | 291 | WP_001247892.1 | nucleotidyltransferase | - |
| ATN83_RS26805 () | 103964..104365 | + | 402 | WP_001293886.1 | DUF86 domain-containing protein | - |
| ATN83_RS26810 () | 104355..104711 | + | 357 | WP_000215515.1 | cupin domain-containing protein | - |
| ATN83_RS26815 () | 104966..105292 | + | 327 | WP_003100858.1 | hypothetical protein | - |
| ATN83_RS26820 () | 105289..105789 | + | 501 | WP_003100856.1 | hypothetical protein | - |
| ATN83_RS26825 () | 105786..106157 | + | 372 | WP_003100853.1 | hypothetical protein | - |
| ATN83_RS26830 () | 106151..106708 | + | 558 | WP_003100847.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| ATN83_RS28170 () | 107077..107459 | + | 383 | Protein_116 | IS1 family transposase IS1X4 | Transposase |
| ATN83_RS26840 () | 107531..108331 | - | 801 | WP_064357890.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| ATN83_RS26845 () | 108374..108664 | - | 291 | WP_060210599.1 | hypothetical protein | - |
| ATN83_RS26850 () | 108730..110055 | - | 1326 | WP_064357892.1 | branched-chain amino acid transport system II carrier protein | - |
| ATN83_RS26855 () | 110168..110788 | - | 621 | WP_064357893.1 | LysE family translocator | - |
| ATN83_RS26860 () | 110873..113770 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| ATN83_RS26865 () | 113865..114470 | + | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| ATN83_RS26870 () | 114695..115102 | - | 408 | WP_060591430.1 | DUF2000 domain-containing protein | - |
| ATN83_RS26875 () | 115162..116037 | - | 876 | WP_064357968.1 | AraC family transcriptional regulator | - |
| ATN83_RS26880 () | 116031..116609 | - | 579 | WP_064357970.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| ATN83_RS26885 () | 116758..119805 | + | 3048 | WP_060591440.1 | Tn3 family transposase ISPsy42 | Transposase |
| ATN83_RS26890 () | 120374..121018 | + | 645 | WP_040088255.1 | hypothetical protein | - |
| ATN83_RS28175 () | 121030..121125 | + | 96 | Protein_128 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ATN83_RS26895 () | 121397..122788 | - | 1392 | WP_040088256.1 | FAD-dependent oxidoreductase | - |
| ATN83_RS26900 () | 122785..123084 | - | 300 | WP_008103233.1 | (2Fe-2S)-binding protein | - |
| ATN83_RS26905 () | 123068..124195 | - | 1128 | WP_040088258.1 | FAD-binding oxidoreductase | - |
| ATN83_RS26910 () | 124946..125776 | + | 831 | WP_077265758.1 | transporter substrate-binding domain-containing protein | - |
| ATN83_RS26915 () | 125976..126887 | - | 912 | WP_040088261.1 | LysR family transcriptional regulator | - |
| ATN83_RS26920 () | 127170..127889 | + | 720 | Protein_134 | ABC transporter permease subunit | - |
| ATN83_RS26925 () | 127892..128611 | + | 720 | WP_040088265.1 | ABC transporter permease | - |
| ATN83_RS26930 () | 128712..129548 | + | 837 | WP_040088267.1 | lysine/arginine/ornithine ABC transporter substrate-binding protein | - |
| ATN83_RS26935 () | 129773..131002 | + | 1230 | WP_040088269.1 | Succinylornithine transaminase | VF |
| ATN83_RS26940 () | 130999..132027 | + | 1029 | WP_040088270.1 | arginine N-succinyltransferase | - |
| ATN83_RS26945 () | 132024..133502 | + | 1479 | WP_064357971.1 | succinylglutamate-semialdehyde dehydrogenase | - |
| ATN83_RS26950 () | 133514..134851 | + | 1338 | WP_040088274.1 | N-succinylarginine dihydrolase | - |
| ATN83_RS26955 () | 134897..135898 | + | 1002 | WP_064357972.1 | succinylglutamate desuccinylase | - |
| ATN83_RS26960 () | 135940..136713 | + | 774 | WP_040088280.1 | Histidine transport ATP-binding protein HisP | VF |
| ATN83_RS26965 () | 136742..137098 | + | 357 | WP_040088276.1 | RidA family protein | - |
| ATN83_RS26970 () | 137402..138370 | + | 969 | WP_022652343.1 | IS5 family transposase IS903B | Transposase |
| ATN83_RS26975 () | 138689..139714 | - | 1026 | WP_001101446.1 | IS110 family transposase ISAve1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|