MGE detailed information
MGE type: Conjugative plasmid MGE length: 152010 bp
Accession: NZ_CP013339 Location: 1..152010 Organism: Raoultella ornithinolytica strain Yangling I2 Replicon: plasmid pKPYL1
Accession: NZ_CP013339 Location: 1..152010 Organism: Raoultella ornithinolytica strain Yangling I2 Replicon: plasmid pKPYL1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN83_RS25460 () | 319..762 | - | 444 | WP_032413443.1 | DUF2384 domain-containing protein | - |
| ATN83_RS27950 () | 863..1021 | - | 159 | Protein_2 | DUF4113 domain-containing protein | - |
| ATN83_RS25465 () | 2037..4034 | - | 1998 | WP_148722914.1 | transketolase | - |
| ATN83_RS25470 () | 4056..5006 | - | 951 | WP_064357833.1 | transaldolase | - |
| ATN83_RS25475 () | 5029..5493 | - | 465 | WP_064357835.1 | RpiB/LacA/LacB family sugar-phosphate isomerase | - |
| ATN83_RS25480 () | 5839..6951 | + | 1113 | WP_064357907.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| ATN83_RS25485 () | 7027..8286 | + | 1260 | WP_064357836.1 | MFS transporter | - |
| ATN83_RS25490 () | 8398..9402 | + | 1005 | WP_064357838.1 | dihydroxyacetone kinase subunit DhaK | - |
| ATN83_RS25495 () | 9404..10054 | + | 651 | WP_064357840.1 | dihydroxyacetone kinase subunit L | - |
| ATN83_RS25500 () | 10274..11236 | + | 963 | WP_064357841.1 | sugar-binding transcriptional regulator | - |
| ATN83_RS25505 () | 11416..11805 | - | 390 | Protein_12 | IS5 family transposase IS903B | Transposase |
| ATN83_RS25510 () | 11893..12300 | + | 408 | WP_015632445.1 | IS66 family transposase ISCro1 | Transposase |
| ATN83_RS25515 () | 12297..12647 | + | 351 | WP_032414478.1 | IS66 family transposase IS682 | Transposase |
| ATN83_RS25520 () | 12677..14266 | + | 1590 | WP_064357845.1 | IS66 family transposase ISEcl6 | Transposase |
| ATN83_RS25525 () | 14701..15881 | - | 1181 | Protein_16 | DUF4268 domain-containing protein | - |
| ATN83_RS25530 () | 16163..16615 | - | 453 | Protein_17 | IS110 family transposase IS1663 | Transposase |
| ATN83_RS25535 () | 16771..18039 | - | 1269 | WP_064357848.1 | ISL3 family transposase ISKpn25 | Transposase |
| ATN83_RS25540 () | 18044..21301 | - | 3258 | WP_019705992.1 | type I restriction endonuclease subunit R | - |
| ATN83_RS25545 () | 21302..22576 | - | 1275 | WP_032436768.1 | restriction endonuclease subunit S | - |
| ATN83_RS25550 () | 22573..24600 | - | 2028 | WP_019706038.1 | type I restriction-modification system subunit M | - |
| ATN83_RS25555 () | 24730..25152 | + | 423 | Protein_22 | SOS response-associated peptidase family protein | - |
| ATN83_RS25560 () | 25331..25654 | + | 324 | WP_017899891.1 | hypothetical protein | - |
| ATN83_RS25565 () | 25973..26977 | - | 1005 | WP_000427620.1 | IS110 family transposase IS4321 | Transposase |
| ATN83_RS25570 () | 27221..27997 | + | 777 | WP_064357852.1 | DUF2971 domain-containing protein | - |
| ATN83_RS25575 () | 28221..29126 | + | 906 | WP_113771282.1 | hypothetical protein | - |
| ATN83_RS27970 () | 29197..29400 | - | 204 | WP_003026790.1 | hemolysin expression modulator Hha | - |
| ATN83_RS25580 () | 29475..29828 | - | 354 | WP_003026788.1 | hypothetical protein | - |
| ATN83_RS27975 () | 29872..30078 | - | 207 | Protein_29 | DNA-binding protein | - |
| ATN83_RS25585 () | 30109..31383 | - | 1275 | Protein_30 | Tn3 family transposase ISEc63 | Transposase |
| ATN83_RS27980 () | 31393..31601 | + | 209 | Protein_31 | Tn3 family transposase | - |
| ATN83_RS25590 () | 31676..32050 | + | 375 | WP_000110555.1 | arsenic transporter ATPase | - |
| ATN83_RS25595 () | 32081..32506 | - | 426 | WP_000065758.1 | glutaredoxin-dependent arsenate reductase | - |
| ATN83_RS25600 () | 32519..33808 | - | 1290 | WP_000922630.1 | arsenite efflux transporter membrane subunit ArsB | - |
| ATN83_RS25605 () | 33857..35608 | - | 1752 | WP_040118429.1 | arsenite efflux transporter ATPase subunit ArsA | - |
| ATN83_RS25610 () | 35626..35988 | - | 363 | WP_000783215.1 | arsenite efflux transporter metallochaperone ArsD | - |
| ATN83_RS25615 () | 36036..36389 | - | 354 | WP_001114073.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| ATN83_RS28780 () | 36705..37298 | + | 594 | WP_044348674.1 | hypothetical protein | - |
| ATN83_RS25625 () | 37722..38381 | + | 660 | WP_000078540.1 | hypothetical protein | - |
| ATN83_RS25630 () | 38378..38707 | + | 330 | WP_004118613.1 | hypothetical protein | - |
| ATN83_RS25635 () | 38700..39902 | + | 1203 | WP_064357855.1 | hypothetical protein | - |
| ATN83_RS25640 () | 39939..40358 | - | 420 | WP_000990392.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| ATN83_RS25645 () | 40355..40666 | - | 312 | WP_000558568.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| ATN83_RS25650 () | 40877..41257 | + | 381 | Protein_44 | gluconate permease | - |
| ATN83_RS25655 () | 41307..42002 | - | 696 | WP_000370412.1 | lactate utilization protein C | - |
| ATN83_RS25660 () | 41995..43422 | - | 1428 | WP_000023895.1 | iron-sulfur cluster-binding protein | - |
| ATN83_RS25665 () | 43433..44152 | - | 720 | WP_001102107.1 | (Fe-S)-binding protein | - |
| ATN83_RS25670 () | 44227..45924 | - | 1698 | WP_003033249.1 | D-lactate dehydrogenase | - |
| ATN83_RS25675 () | 46359..47912 | + | 1554 | WP_044348657.1 | L-lactate permease | - |
| ATN83_RS25680 () | 48212..48909 | - | 698 | Protein_50 | IS1 family transposase IS1X2 | Transposase |
| ATN83_RS25685 () | 49056..50939 | + | 1884 | WP_081042494.1 | putative signaling protein | VF |
| ATN83_RS25690 () | 50966..51913 | - | 948 | WP_064357859.1 | sensor domain-containing diguanylate cyclase | - |
| ATN83_RS25695 () | 53057..53797 | + | 741 | WP_001515717.1 | tyrosine-type recombinase/integrase | - |
| ATN83_RS25700 () | 54495..55505 | - | 1011 | WP_000200070.1 | RepB family plasmid replication initiator protein | - |
| ATN83_RS25705 () | 56256..57422 | + | 1167 | WP_000523812.1 | Sporulation initiation inhibitor protein Soj | VF |
| ATN83_RS25710 () | 57422..58393 | + | 972 | WP_004118495.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| ATN83_RS25720 () | 59637..59942 | - | 306 | Protein_57 | hypothetical protein | - |
| ATN83_RS25725 () | 59996..60247 | - | 252 | WP_004118488.1 | plasmid stabilization protein | - |
| ATN83_RS25730 () | 60326..61597 | - | 1272 | WP_004118485.1 | Y-family DNA polymerase | - |
| ATN83_RS25735 () | 61597..62022 | - | 426 | WP_001776124.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ATN83_RS25740 () | 62235..62465 | + | 231 | WP_004118481.1 | hypothetical protein | - |
| ATN83_RS25745 () | 62988..63413 | + | 426 | WP_004118478.1 | antirestriction protein | - |
| ATN83_RS25750 () | 63650..63904 | + | 255 | WP_004118476.1 | DNA polymerase III subunit theta | - |
| ATN83_RS25755 () | 63939..64256 | + | 318 | WP_004118473.1 | hypothetical protein | - |
| ATN83_RS25765 () | 65037..65264 | + | 228 | WP_004118469.1 | hypothetical protein | - |
| ATN83_RS25770 () | 65356..65586 | + | 231 | WP_001568051.1 | hypothetical protein | - |
| ATN83_RS25775 () | 65638..66993 | + | 1356 | WP_004118466.1 | DUF3560 domain-containing protein | - |
| ATN83_RS25780 () | 67041..67604 | + | 564 | WP_004118464.1 | methyltransferase | - |
| ATN83_RS25785 () | 68440..68982 | + | 543 | WP_004118974.1 | single-stranded DNA-binding protein | - |
| ATN83_RS25790 () | 69031..69279 | + | 249 | WP_004118972.1 | DUF905 domain-containing protein | - |
| ATN83_RS25795 () | 69349..71406 | + | 2058 | WP_064357861.1 | ParB/RepB/Spo0J family partition protein | - |
| ATN83_RS25800 () | 71450..71881 | + | 432 | WP_004118968.1 | conjugation system SOS inhibitor PsiB | - |
| ATN83_RS25805 () | 71878..72606 | + | 729 | WP_064357862.1 | plasmid SOS inhibition protein A | - |
| ATN83_RS25810 () | 73010..73339 | + | 330 | WP_004118963.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ATN83_RS25815 () | 73320..73601 | + | 282 | WP_004118961.1 | helix-turn-helix transcriptional regulator | - |
| ATN83_RS25820 () | 74420..74695 | + | 276 | WP_032700867.1 | hypothetical protein | - |
| ATN83_RS25825 () | 74752..74910 | + | 159 | WP_162180130.1 | hypothetical protein | - |
| ATN83_RS25830 () | 74936..75283 | + | 348 | WP_032700835.1 | hypothetical protein | - |
| ATN83_RS25835 () | 75377..75523 | + | 147 | WP_064357864.1 | hypothetical protein | - |
| ATN83_RS25840 () | 76208..76738 | + | 531 | WP_064357865.1 | antirestriction protein | - |
| ATN83_RS25845 () | 76776..77255 | - | 480 | WP_032716648.1 | hypothetical protein | VF |
| ATN83_RS25850 () | 77680..78069 | + | 390 | WP_064357868.1 | relaxosome protein TraM | - |
| ATN83_RS28040 () | 78270..78959 | + | 690 | WP_071887219.1 | hypothetical protein | - |
| ATN83_RS28045 () | 79054..79293 | + | 240 | WP_071887220.1 | TraY domain-containing protein | - |
| ATN83_RS25855 () | 79366..79734 | + | 369 | WP_032716651.1 | type IV conjugative transfer system pilin TraA | - |
| ATN83_RS25860 () | 79748..80053 | + | 306 | WP_020323523.1 | type IV conjugative transfer system protein TraL | - |
| ATN83_RS25865 () | 80073..80639 | + | 567 | WP_032700829.1 | type IV conjugative transfer system protein TraE | - |
| ATN83_RS25870 () | 80626..81360 | + | 735 | WP_032700828.1 | type-F conjugative transfer system secretin TraK | - |
| ATN83_RS25875 () | 81360..82778 | + | 1419 | WP_032716653.1 | conjugal transfer protein TraB | - |
| ATN83_RS28630 () | 82771..83553 | + | 783 | WP_155522187.1 | hypothetical protein | - |
| ATN83_RS28050 () | 83572..84141 | + | 570 | WP_071887221.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ATN83_RS28635 () | 84503..84787 | + | 285 | WP_128910320.1 | hypothetical protein | - |
| ATN83_RS25885 () | 85082..85300 | + | 219 | WP_032716688.1 | hypothetical protein | - |
| ATN83_RS25895 () | 85781..86002 | + | 222 | WP_032716655.1 | hypothetical protein | - |
| ATN83_RS25905 () | 86115..87235 | + | 1121 | WP_152292706.1 | IS3 family transposase ISKpn34 | Transposase |
| ATN83_RS28640 () | 87407..87628 | + | 222 | WP_196377497.1 | hypothetical protein | - |
| ATN83_RS25915 () | 87665..87961 | + | 297 | WP_131056982.1 | hypothetical protein | - |
| ATN83_RS25920 () | 88442..91081 | + | 2640 | WP_064357871.1 | type IV secretion system protein TraC | - |
| ATN83_RS25925 () | 91081..91473 | + | 393 | WP_032716659.1 | type-F conjugative transfer system protein TrbI | - |
| ATN83_RS25930 () | 91470..92099 | + | 630 | WP_032716660.1 | type-F conjugative transfer system protein TraW | - |
| ATN83_RS25935 () | 92110..93099 | + | 990 | WP_049268071.1 | conjugal transfer pilus assembly protein TraU | - |
| ATN83_RS25940 () | 93139..93741 | + | 603 | WP_162933671.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ATN83_RS25945 () | 93741..95696 | + | 1956 | WP_032716661.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ATN83_RS25950 () | 95712..96092 | + | 381 | WP_032700815.1 | hypothetical protein | - |
| ATN83_RS25955 () | 96082..96318 | + | 237 | WP_032700814.1 | conjugal transfer protein TrbE | - |
| ATN83_RS25965 () | 96544..96870 | + | 327 | WP_032700812.1 | hypothetical protein | - |
| ATN83_RS25970 () | 96893..97645 | + | 753 | WP_032724578.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ATN83_RS25975 () | 97656..97892 | + | 237 | WP_032700810.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ATN83_RS25980 () | 97867..98433 | + | 567 | WP_032716665.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ATN83_RS25985 () | 98426..98854 | + | 429 | WP_032716666.1 | conjugal transfer protein TrbF | - |
| ATN83_RS25990 () | 98841..100211 | + | 1371 | WP_064357873.1 | conjugal transfer protein TraH | - |
| ATN83_RS25995 () | 100211..103033 | + | 2823 | WP_064357874.1 | conjugal transfer mating pair stabilization protein TraG | - |
| ATN83_RS26000 () | 103059..103673 | + | 615 | WP_032716668.1 | hypothetical protein | - |
| ATN83_RS26005 () | 103868..104599 | + | 732 | WP_032716670.1 | complement resistance protein TraT | - |
| ATN83_RS26010 () | 104793..107123 | + | 2331 | WP_032716692.1 | type IV conjugative transfer system coupling protein TraD | - |
| ATN83_RS26015 () | 107123..112384 | + | 5262 | WP_064357876.1 | Multifunctional conjugation protein TraI | Relaxase |
| ATN83_RS26020 () | 112477..113202 | + | 726 | WP_064357878.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| ATN83_RS26025 () | 113344..113931 | + | 588 | WP_032716672.1 | fertility inhibition protein FinO | - |
| ATN83_RS26030 () | 114043..114828 | + | 786 | WP_064357880.1 | DsbA family protein | - |
| ATN83_RS26035 () | 114868..115512 | + | 645 | WP_064357883.1 | hypothetical protein | - |
| ATN83_RS26040 () | 115666..116250 | + | 585 | WP_063851066.1 | hypothetical protein | - |
| ATN83_RS26045 () | 116383..116982 | + | 600 | WP_063923534.1 | DUF2726 domain-containing protein | - |
| ATN83_RS26050 () | 116989..117555 | + | 567 | WP_044348800.1 | Phospholipase D | VF |
| ATN83_RS26055 () | 117696..117965 | + | 270 | WP_040118434.1 | replication regulatory protein RepA | - |
| ATN83_RS28080 () | 118181..118252 | + | 72 | WP_071887233.1 | RepA leader peptide Tap | - |
| ATN83_RS26060 () | 118245..119117 | + | 873 | WP_071887225.1 | incFII family plasmid replication initiator RepA | - |
| ATN83_RS26075 () | 121691..122053 | + | 363 | WP_064357887.1 | IS630 family transposase ISVa15 | Transposase |
| ATN83_RS26080 () | 122093..122677 | + | 585 | WP_062933092.1 | type 1 fimbrial protein | - |
| ATN83_RS26085 () | 122730..123269 | + | 540 | Protein_130 | putative fimbrial chaperone YehC | VF |
| ATN83_RS26090 () | 123354..124154 | - | 801 | WP_064357890.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| ATN83_RS26095 () | 124197..124487 | - | 291 | WP_060210599.1 | hypothetical protein | - |
| ATN83_RS26100 () | 124553..125878 | - | 1326 | WP_064357892.1 | branched-chain amino acid transport system II carrier protein | - |
| ATN83_RS26105 () | 125991..126611 | - | 621 | WP_064357893.1 | LysE family translocator | - |
| ATN83_RS26110 () | 126696..129593 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| ATN83_RS26115 () | 129688..130293 | + | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| ATN83_RS26120 () | 130327..130683 | - | 357 | Protein_137 | IS5 family transposase IS903B | Transposase |
| ATN83_RS26130 () | 130760..131907 | + | 1148 | WP_155522189.1 | IS3 family transposase ISEhe3 | Transposase |
| ATN83_RS26135 () | 132142..133260 | - | 1119 | WP_032693909.1 | FAD-binding oxidoreductase | - |
| ATN83_RS26140 () | 133293..134366 | - | 1074 | WP_064357895.1 | Gfo/Idh/MocA family oxidoreductase | - |
| ATN83_RS26145 () | 134366..135112 | - | 747 | WP_032693911.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| ATN83_RS26150 () | 135114..135926 | - | 813 | WP_032693912.1 | amino acid ABC transporter permease | - |
| ATN83_RS26155 () | 136000..136821 | - | 822 | WP_032693914.1 | ABC transporter substrate-binding protein | - |
| ATN83_RS26160 () | 137017..138093 | + | 1077 | WP_032693915.1 | LacI family transcriptional regulator | - |
| ATN83_RS28340 () | 138325..138845 | + | 521 | Protein_145 | IS3 family transposase ISKpn34 | Transposase |
| ATN83_RS26170 () | 139109..139267 | - | 159 | WP_064357896.1 | IS3 family transposase ISRso16 | Transposase |
| ATN83_RS26175 () | 139651..140517 | - | 867 | WP_016947509.1 | DMT family transporter | - |
| ATN83_RS26180 () | 140538..141368 | - | 831 | WP_050595137.1 | TIM barrel protein | - |
| ATN83_RS26185 () | 141368..142108 | - | 741 | WP_003031954.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| ATN83_RS26190 () | 142108..142770 | - | 663 | WP_003031955.1 | amino acid ABC transporter permease | - |
| ATN83_RS26195 () | 142814..143569 | - | 756 | WP_071887228.1 | ABC transporter substrate-binding protein | - |
| ATN83_RS26200 () | 143635..144465 | - | 831 | WP_064357898.1 | carbohydrate kinase | - |
| ATN83_RS26205 () | 144471..145508 | - | 1038 | WP_003031958.1 | SIS domain-containing protein | - |
| ATN83_RS26210 () | 145739..146836 | + | 1098 | WP_064357900.1 | LacI family transcriptional regulator | - |
| ATN83_RS26215 () | 147249..148319 | + | 1071 | WP_064357902.1 | PD-(D/E)XK nuclease family protein | - |
| ATN83_RS28785 () | 148474..148659 | - | 186 | WP_196377496.1 | IS3 family transposase ISMaq2 | Transposase |
| ATN83_RS28105 () | 148763..149492 | + | 730 | Protein_157 | DDE-type integrase/transposase/recombinase | - |
| ATN83_RS26245 () | 150758..150937 | - | 180 | WP_007372130.1 | hypothetical protein | - |
| ATN83_RS26250 () | 151016..151713 | + | 698 | Protein_160 | IS1 family transposase IS1X2 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|