MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 59644 bp
Accession: NZ_CP013007 Location: 1..59644 Organism: Xanthomonas citri pv. malvacearum strain XcmN1003 Replicon: plasmid pXcmN
Accession: NZ_CP013007 Location: 1..59644 Organism: Xanthomonas citri pv. malvacearum strain XcmN1003 Replicon: plasmid pXcmN
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APY30_RS23365 () | 1236..2057 | - | 822 | WP_089504605.1 | hypothetical protein | - |
| APY30_RS24970 () | 2793..3005 | + | 213 | Protein_2 | MobD protein | - |
| APY30_RS23380 () | 3056..4275 | + | 1220 | WP_089504418.1 | IS3 family transposase ISAzsp1 | Transposase |
| APY30_RS23385 () | 4277..4483 | - | 207 | WP_033836465.1 | hypothetical protein | - |
| APY30_RS23390 () | 4515..5381 | - | 867 | WP_033836464.1 | hypothetical protein | - |
| APY30_RS23395 () | 5378..5836 | - | 459 | WP_089504606.1 | hypothetical protein | - |
| APY30_RS23400 () | 6050..6496 | + | 447 | WP_029220486.1 | avidin/streptavidin family protein | - |
| APY30_RS23405 () | 6709..7308 | - | 600 | WP_033836462.1 | hypothetical protein | - |
| APY30_RS23410 () | 7541..8164 | + | 624 | WP_033836461.1 | hypothetical protein | - |
| APY30_RS23415 () | 8161..8655 | - | 495 | WP_033836460.1 | hypothetical protein | - |
| APY30_RS23420 () | 8795..9445 | - | 651 | WP_033836459.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| APY30_RS23425 () | 9990..10373 | - | 384 | Protein_12 | Tn3 family transposase ISPsy42 | Transposase |
| APY30_RS23435 () | 10564..10824 | + | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APY30_RS23440 () | 10821..11222 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| APY30_RS23445 () | 11247..11510 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| APY30_RS23450 () | 11517..12704 | + | 1188 | WP_033836458.1 | zeta toxin family protein | - |
| APY30_RS23455 () | 12984..14210 | + | 1227 | WP_033836457.1 | replication protein | - |
| APY30_RS23470 () | 16148..17425 | - | 1278 | WP_005918469.1 | lytic murein transglycosylase | - |
| APY30_RS23475 () | 17558..19117 | - | 1560 | Protein_20 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| APY30_RS23480 () | 19287..19828 | + | 542 | Protein_21 | IS3 family transposase ISXac2 | Transposase |
| APY30_RS23485 () | 19869..20792 | - | 924 | WP_005934469.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| APY30_RS23490 () | 21000..21239 | + | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| APY30_RS23495 () | 21239..21658 | + | 420 | WP_005934465.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| APY30_RS23500 () | 21663..24638 | + | 2976 | WP_033836402.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| APY30_RS23505 () | 24657..25355 | + | 699 | WP_033836401.1 | UPF0149 family protein | - |
| APY30_RS23510 () | 25400..25951 | + | 552 | Protein_27 | IS3 family transposase ISXac2 | Transposase |
| APY30_RS23520 () | 26436..29515 | + | 3080 | Protein_28 | TAL effector repeat-containing protein | - |
| APY30_RS23525 () | 29698..29988 | - | 291 | WP_003490957.1 | hypothetical protein | - |
| APY30_RS23535 () | 30729..31550 | + | 822 | WP_089504608.1 | hypothetical protein | - |
| APY30_RS23540 () | 32481..33248 | + | 768 | WP_033837043.1 | ParA family protein | - |
| APY30_RS23545 () | 33262..34287 | + | 1026 | WP_003490721.1 | ParB/RepB/Spo0J family partition protein | - |
| APY30_RS23550 () | 34340..34669 | + | 330 | WP_029820892.1 | IS481 family transposase ISMav2 | Transposase |
| APY30_RS24975 () | 34672..34839 | + | 168 | WP_003490725.1 | hypothetical protein | - |
| APY30_RS23555 () | 35092..35445 | - | 354 | WP_033836400.1 | hypothetical protein | - |
| APY30_RS23560 () | 35494..36201 | - | 708 | WP_029820894.1 | hypothetical protein | - |
| APY30_RS23565 () | 36198..36644 | - | 447 | WP_029221888.1 | hypothetical protein | - |
| APY30_RS23570 () | 36993..37388 | + | 396 | WP_005931747.1 | hypothetical protein | - |
| APY30_RS23575 () | 37484..37753 | + | 270 | WP_003490597.1 | hypothetical protein | - |
| APY30_RS23580 () | 37750..38043 | + | 294 | WP_005931751.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| APY30_RS23590 () | 39645..39971 | - | 327 | WP_015462614.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| APY30_RS23595 () | 39968..40186 | - | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| APY30_RS23600 () | 40323..40697 | - | 375 | WP_031425619.1 | hypothetical protein | - |
| APY30_RS23605 () | 40774..41193 | - | 420 | WP_031425621.1 | hypothetical protein | - |
| APY30_RS23610 () | 41327..41908 | - | 582 | Protein_46 | Type IV secretion system protein virB1 | VF |
| APY30_RS23625 () | 42258..45437 | + | 3180 | WP_089504609.1 | TAL effector repeat-containing protein | - |
| APY30_RS23635 () | 46025..46291 | - | 267 | WP_033836092.1 | hypothetical protein | - |
| APY30_RS23640 () | 46288..46797 | - | 510 | WP_033836093.1 | GNAT family N-acetyltransferase | Toxin Detail |
| APY30_RS23645 () | 46794..47084 | - | 291 | WP_017154722.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| APY30_RS23650 () | 47307..47531 | + | 225 | WP_033836094.1 | hypothetical protein | - |
| APY30_RS23655 () | 47528..48091 | + | 564 | WP_033836095.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| APY30_RS23660 () | 48158..48808 | + | 651 | WP_033836096.1 | ParA family protein | - |
| APY30_RS23665 () | 48808..49062 | + | 255 | WP_012477434.1 | hypothetical protein | - |
| APY30_RS24980 () | 49285..49443 | + | 159 | WP_190276501.1 | hypothetical protein | - |
| APY30_RS23670 () | 49440..50246 | + | 807 | WP_033836097.1 | serine protease | - |
| APY30_RS23675 () | 50312..51232 | + | 921 | WP_012477431.1 | RepA | - |
| APY30_RS23680 () | 51889..54969 | - | 3081 | WP_089504610.1 | TAL effector repeat-containing protein | - |
| APY30_RS23695 () | 55319..58444 | - | 3126 | Protein_59 | TAL effector repeat-containing protein | - |
| APY30_RS23705 () | 58816..59070 | - | 255 | WP_089504611.1 | ribbon-helix-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|