MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 112639 bp
Accession: NZ_CP012683 Location: 1..112639 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 Replicon: plasmid p33673_IncF
Accession: NZ_CP012683 Location: 1..112639 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 Replicon: plasmid p33673_IncF
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE15cs_RS24175 () | 159..416 | + | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| SE15cs_RS26470 () | 648..722 | + | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| SE15cs_RS24180 () | 715..1572 | + | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| SE15cs_RS24185 () | 2487..2756 | + | 270 | WP_054088336.1 | hypothetical protein | Antitoxin Detail |
| SE15cs_RS26485 () | 2753..3034 | + | 282 | WP_071845783.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SE15cs_RS24190 () | 3047..3895 | - | 849 | Protein_5 | IS91 family transposase | - |
| SE15cs_RS24205 () | 5280..5645 | - | 366 | WP_054088337.1 | hypothetical protein | - |
| SE15cs_RS27570 () | 5890..6126 | + | 237 | WP_074152073.1 | colicin V immunity protein | - |
| SE15cs_RS24210 () | 6104..6414 | + | 311 | Protein_9 | colicin V | - |
| SE15cs_RS24215 () | 6584..8698 | - | 2115 | WP_122997259.1 | peptidase domain-containing ABC transporter | - |
| SE15cs_RS24220 () | 8673..9947 | - | 1275 | WP_000489608.1 | HlyD family secretion protein | - |
| SE15cs_RS24900 () | 10390..13356 | - | 2967 | WP_000008826.1 | Tn3 family transposase | - |
| SE15cs_RS24230 () | 13337..13960 | - | 624 | WP_000904945.1 | recombinase family protein | - |
| SE15cs_RS26505 () | 14145..14327 | + | 183 | Protein_14 | transposase | - |
| SE15cs_RS24235 () | 14364..15068 | + | 705 | WP_001067845.1 | IS6-like element IS26 family transposase | - |
| SE15cs_RS27575 () | 15221..16018 | + | 798 | Protein_16 | methyl-accepting chemotaxis protein | - |
| SE15cs_RS24245 () | 16400..17608 | - | 1209 | WP_001339197.1 | IS4-like element ISVsa5 family transposase | - |
| SE15cs_RS24250 () | 17776..18033 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| SE15cs_RS24255 () | 17966..18367 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| SE15cs_RS24260 () | 18651..20423 | + | 1773 | WP_001262766.1 | DUF262 domain-containing protein | - |
| SE15cs_RS24265 () | 20647..21168 | - | 522 | Protein_21 | Tn3 family transposase | - |
| SE15cs_RS24275 () | 21230..21927 | + | 698 | Protein_22 | IS1 family transposase | - |
| SE15cs_RS24280 () | 22476..22742 | + | 267 | WP_024144810.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| SE15cs_RS26525 () | 23049..23270 | + | 222 | WP_149018855.1 | serine/threonine protein kinase | - |
| SE15cs_RS24285 () | 23391..24131 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| SE15cs_RS24290 () | 24416..25393 | - | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| SE15cs_RS24295 () | 26179..26991 | + | 813 | WP_032333019.1 | hypothetical protein | - |
| SE15cs_RS26535 () | 27280..27528 | - | 249 | Protein_28 | abortive infection family protein | - |
| SE15cs_RS27160 () | 27586..28283 | + | 698 | Protein_29 | IS1 family transposase | - |
| SE15cs_RS24310 () | 28299..28628 | + | 330 | Protein_30 | TOBE domain-containing protein | - |
| SE15cs_RS24315 () | 28737..29669 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| SE15cs_RS24320 () | 29656..31059 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| SE15cs_RS24325 () | 31267..32283 | + | 1017 | WP_149677109.1 | IS5-like element IS5 family transposase | - |
| SE15cs_RS24330 () | 32698..33843 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| SE15cs_RS26540 () | 34003..34281 | - | 279 | Protein_35 | type II toxin-antitoxin system death-on-curing family toxin | - |
| SE15cs_RS24335 () | 34281..34502 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| SE15cs_RS24340 () | 34685..36241 | + | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| SE15cs_RS24345 () | 36238..37521 | + | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| SE15cs_RS24350 () | 37643..40759 | + | 3117 | WP_039002890.1 | HsdR family type I site-specific deoxyribonuclease | - |
| SE15cs_RS24355 () | 40973..41670 | + | 698 | Protein_40 | IS1 family transposase | - |
| SE15cs_RS24360 () | 41807..42739 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| SE15cs_RS24365 () | 42743..43738 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| SE15cs_RS24370 () | 44203..46341 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| SE15cs_RS24375 () | 46503..46919 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| SE15cs_RS24380 () | 46916..47146 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| SE15cs_RS24385 () | 47452..50569 | + | 3118 | Protein_46 | hypothetical protein | - |
| SE15cs_RS24390 () | 50832..51965 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| SE15cs_RS24395 () | 51985..52269 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| SE15cs_RS24405 () | 52694..53683 | - | 990 | Protein_49 | IS30-like element IS30 family transposase | - |
| SE15cs_RS24410 () | 53748..54644 | + | 897 | Protein_50 | IS3 family transposase | - |
| SE15cs_RS24415 () | 54746..55027 | + | 282 | WP_054088342.1 | hypothetical protein | - |
| SE15cs_RS27180 () | 55128..55825 | - | 698 | Protein_52 | IS1 family transposase | - |
| SE15cs_RS24430 () | 55935..57260 | + | 1326 | WP_021512928.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| SE15cs_RS24435 () | 57409..58113 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| SE15cs_RS24440 () | 58178..58618 | + | 441 | Protein_55 | tyrosine-type recombinase/integrase | - |
| SE15cs_RS24445 () | 58692..58967 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| SE15cs_RS24450 () | 58961..59605 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| SE15cs_RS24455 () | 59827..60798 | + | 972 | WP_001103690.1 | hypothetical protein | - |
| SE15cs_RS24460 () | 60803..61195 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| SE15cs_RS24465 () | 61200..62471 | - | 1272 | WP_000457518.1 | Y-family DNA polymerase | - |
| SE15cs_RS24470 () | 62471..62908 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| SE15cs_RS24475 () | 62905..63153 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| SE15cs_RS24480 () | 63571..64473 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| SE15cs_RS27585 () | 64477..64781 | + | 305 | Protein_64 | hypothetical protein | - |
| SE15cs_RS24485 () | 64858..65541 | + | 684 | WP_000086185.1 | DNA methylase | - |
| SE15cs_RS24490 () | 65542..65763 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| SE15cs_RS24495 () | 65777..66211 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| SE15cs_RS24500 () | 66262..67038 | + | 777 | WP_054088345.1 | hypothetical protein | - |
| SE15cs_RS24505 () | 67455..67880 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| SE15cs_RS24510 () | 67927..68349 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| SE15cs_RS27590 () | 68346..68537 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| SE15cs_RS26575 () | 69572..69802 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| SE15cs_RS24525 () | 69854..71215 | + | 1362 | WP_038999961.1 | DUF3560 domain-containing protein | - |
| SE15cs_RS24530 () | 71261..71824 | + | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| SE15cs_RS27195 () | 71850..72086 | + | 237 | WP_032153960.1 | hypothetical protein | - |
| SE15cs_RS27605 () | 72497..72703 | + | 207 | WP_000275853.1 | hypothetical protein | - |
| SE15cs_RS24545 () | 72729..73268 | + | 540 | WP_032332913.1 | single-stranded DNA-binding protein | - |
| SE15cs_RS24550 () | 73325..73558 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| SE15cs_RS24555 () | 73624..75582 | + | 1959 | WP_054088343.1 | ParB/RepB/Spo0J family partition protein | - |
| SE15cs_RS24560 () | 75637..76071 | + | 435 | WP_000845907.1 | conjugation system SOS inhibitor PsiB | - |
| SE15cs_RS24565 () | 76068..76787 | + | 720 | WP_001276240.1 | plasmid SOS inhibition protein A | - |
| SE15cs_RS24570 () | 77067..77225 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | - |
| SE15cs_RS24580 () | 78147..78434 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| SE15cs_RS24585 () | 78555..79376 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| SE15cs_RS24590 () | 79673..80275 | - | 603 | WP_000243712.1 | transglycosylase SLT domain-containing protein | - |
| SE15cs_RS24595 () | 80596..80979 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| SE15cs_RS24600 () | 81166..81855 | + | 690 | WP_000283380.1 | conjugal transfer transcriptional regulator TraJ | - |
| SE15cs_RS24605 () | 81954..82349 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| SE15cs_RS24610 () | 82382..82744 | + | 363 | WP_000994784.1 | type IV conjugative transfer system pilin TraA | - |
| SE15cs_RS24615 () | 82749..83060 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| SE15cs_RS24620 () | 83082..83648 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| SE15cs_RS24625 () | 83659..84363 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| SE15cs_RS24630 () | 84363..85790 | + | 1428 | WP_000146690.1 | conjugal transfer protein TraB | - |
| SE15cs_RS24635 () | 85780..86367 | + | 588 | WP_000002772.1 | conjugal transfer protein TraP | - |
| SE15cs_RS24640 () | 86306..86674 | + | 369 | WP_071787938.1 | conjugal transfer protein TrbD | - |
| SE15cs_RS24645 () | 86671..87186 | + | 516 | WP_000724019.1 | type IV conjugative transfer system lipoprotein TraV | - |
| SE15cs_RS24650 () | 87321..87542 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| SE15cs_RS24655 () | 87702..90329 | + | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| SE15cs_RS24660 () | 90326..90712 | + | 387 | WP_054088344.1 | type-F conjugative transfer system protein TrbI | - |
| SE15cs_RS24665 () | 90709..91341 | + | 633 | WP_001749440.1 | type-F conjugative transfer system protein TraW | - |
| SE15cs_RS24670 () | 91338..92330 | + | 993 | WP_023148235.1 | conjugal transfer pilus assembly protein TraU | - |
| SE15cs_RS24675 () | 92339..92977 | + | 639 | WP_000777691.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| SE15cs_RS24680 () | 92974..94782 | + | 1809 | WP_000821844.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| SE15cs_RS24685 () | 94809..95069 | + | 261 | WP_000864348.1 | conjugal transfer protein TrbE | - |
| SE15cs_RS24690 () | 95062..95805 | + | 744 | WP_039002205.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| SE15cs_RS24695 () | 95921..96202 | + | 282 | WP_000549795.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| SE15cs_RS24700 () | 96189..96734 | + | 546 | WP_000052613.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| SE15cs_RS24705 () | 96664..97026 | + | 363 | WP_001443292.1 | P-type conjugative transfer protein TrbJ | - |
| SE15cs_RS24710 () | 97023..98399 | + | 1377 | WP_000982842.1 | conjugal transfer protein TraH | - |
| SE15cs_RS24715 () | 98396..101218 | + | 2823 | WP_001007048.1 | conjugal transfer mating pair stabilization protein TraG | - |
| SE15cs_RS24720 () | 101233..101736 | + | 504 | WP_000605510.1 | hypothetical protein | - |
| SE15cs_RS24725 () | 101768..102499 | + | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| SE15cs_RS24730 () | 102752..104940 | + | 2189 | Protein_113 | type IV conjugative transfer system coupling protein TraD | - |
| SE15cs_RS24735 () | 104940..110972 | + | 6033 | WP_149677110.1 | conjugative transfer relaxase/helicase TraI | - |
| SE15cs_RS24745 () | 111027..111587 | + | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| SE15cs_RS24750 () | 111722..111934 | + | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| SE15cs_RS26610 () | 112324..112530 | + | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|