MGE detailed information
MGE type: Conjugative plasmid MGE length: 82288 bp
Accession: NZ_CP011065 Location: 1..82288 Organism: Escherichia coli str. Sanji Replicon: plasmid pSJ_82
Accession: NZ_CP011065 Location: 1..82288 Organism: Escherichia coli str. Sanji Replicon: plasmid pSJ_82
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y979_RS26620 () | 237..491 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| Y979_RS29445 () | 729..803 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| Y979_RS26625 () | 796..1653 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| Y979_RS26635 () | 2567..2836 | + | 270 | WP_012881119.1 | ABC transporter ATPase | Antitoxin Detail |
| Y979_RS26640 () | 2833..3114 | + | 282 | WP_012881118.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Y979_RS26645 () | 3160..4008 | + | 849 | WP_012881117.1 | 3'-5' exonuclease | - |
| Y979_RS26650 () | 4125..4607 | + | 483 | WP_001311056.1 | hypothetical protein | - |
| Y979_RS26655 () | 4636..6120 | - | 1485 | WP_016240487.1 | IS5 family transposase IS903B | Transposase |
| Y979_RS26660 () | 6200..7075 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| Y979_RS26670 () | 7325..8587 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| Y979_RS26675 () | 8931..10118 | - | 1188 | WP_025999368.1 | MFS transporter | - |
| Y979_RS26680 () | 10175..10936 | - | 762 | WP_000020504.1 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| Y979_RS26685 () | 10936..11973 | - | 1038 | WP_001545318.1 | Hemin transport system permease protein HmuU | VF |
| Y979_RS26690 () | 11973..12971 | - | 999 | WP_012881113.1 | ABC transporter substrate-binding protein | - |
| Y979_RS26695 () | 13121..13279 | - | 159 | Protein_14 | integrase core domain-containing protein | - |
| Y979_RS26700 () | 13322..13564 | - | 243 | Protein_15 | helix-turn-helix domain-containing protein | - |
| Y979_RS26710 () | 13822..14172 | - | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| Y979_RS26715 () | 14175..15137 | - | 963 | WP_000959878.1 | plasmid segregation protein ParM | - |
| Y979_RS30330 () | 15284..15577 | + | 294 | WP_032142565.1 | hypothetical protein | - |
| Y979_RS26720 () | 15653..16336 | + | 684 | WP_012881149.1 | DNA methylase | - |
| Y979_RS26725 () | 16337..16558 | + | 222 | WP_012881148.1 | hypothetical protein | - |
| Y979_RS26730 () | 16572..17006 | + | 435 | WP_012917669.1 | DUF1380 family protein | - |
| Y979_RS30970 () | 17057..17833 | + | 777 | WP_025999342.1 | hypothetical protein | - |
| Y979_RS26740 () | 18372..18674 | + | 303 | WP_072126845.1 | antirestriction protein | - |
| Y979_RS26745 () | 18721..19143 | + | 423 | WP_012917670.1 | DUF1380 family protein | - |
| Y979_RS26750 () | 19140..19331 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| Y979_RS29480 () | 20368..20598 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| Y979_RS26760 () | 20650..22011 | + | 1362 | WP_012917672.1 | DUF3560 domain-containing protein | - |
| Y979_RS26765 () | 22057..22620 | + | 564 | WP_012881140.1 | class I SAM-dependent methyltransferase | - |
| Y979_RS30350 () | 22772..23038 | + | 267 | WP_071828223.1 | hypothetical protein | - |
| Y979_RS26780 () | 23511..24032 | + | 522 | WP_012881138.1 | single-stranded DNA-binding protein | - |
| Y979_RS26785 () | 24191..25438 | + | 1248 | WP_000414651.1 | site-specific integrase | - |
| Y979_RS26790 () | 25425..26963 | + | 1539 | WP_001333349.1 | hypothetical protein | - |
| Y979_RS26795 () | 26980..29013 | + | 2034 | WP_000807722.1 | hypothetical protein | - |
| Y979_RS31570 () | 29006..29425 | + | 420 | WP_001062122.1 | hypothetical protein | - |
| Y979_RS26805 () | 29501..34264 | + | 4764 | WP_062914738.1 | ATP-binding protein | - |
| Y979_RS26810 () | 34803..35624 | - | 822 | WP_001272932.1 | hypothetical protein | - |
| Y979_RS26815 () | 35989..36222 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| Y979_RS26820 () | 36286..38244 | + | 1959 | WP_012881137.1 | ParB/RepB/Spo0J family partition protein | - |
| Y979_RS26825 () | 38299..38733 | + | 435 | WP_000845949.1 | conjugation system SOS inhibitor PsiB | - |
| Y979_RS26830 () | 38730..39449 | + | 720 | WP_012881136.1 | plasmid SOS inhibition protein A | - |
| Y979_RS26835 () | 39446..39760 | + | 315 | WP_000872086.1 | hypothetical protein | - |
| - () | 39709..39916 | + | 208 | NuclAT_0 | - | - |
| - () | 39709..39916 | + | 208 | NuclAT_0 | - | - |
| - () | 39709..39916 | + | 208 | NuclAT_0 | - | - |
| - () | 39709..39916 | + | 208 | NuclAT_0 | - | - |
| Y979_RS29510 () | 39969..40130 | + | 162 | WP_012881135.1 | type I toxin-antitoxin system Hok family toxin | - |
| Y979_RS31575 () | 40368..40637 | - | 270 | WP_001388591.1 | hypothetical protein | - |
| Y979_RS26855 () | 40976..41299 | + | 324 | WP_000533253.1 | hypothetical protein | - |
| Y979_RS26860 () | 41358..41600 | + | 243 | WP_000540588.1 | hypothetical protein | - |
| Y979_RS30365 () | 41866..42138 | + | 273 | WP_072130061.1 | hypothetical protein | - |
| Y979_RS26875 () | 42609..42905 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| Y979_RS26880 () | 43015..43836 | + | 822 | WP_001234437.1 | DUF945 domain-containing protein | - |
| Y979_RS26885 () | 44132..44734 | - | 603 | WP_000243715.1 | hypothetical protein | VF |
| Y979_RS26890 () | 45057..45440 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| Y979_RS26895 () | 45634..46305 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| Y979_RS26900 () | 46442..46669 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| Y979_RS26905 () | 46702..47061 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| Y979_RS26910 () | 47076..47387 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| Y979_RS26915 () | 47409..47975 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| Y979_RS26920 () | 47962..48690 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| Y979_RS26925 () | 48690..50141 | + | 1452 | WP_000146675.1 | conjugal transfer protein TraB | - |
| Y979_RS26930 () | 50110..50697 | + | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| Y979_RS26935 () | 50636..51004 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| Y979_RS26940 () | 51001..51516 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| Y979_RS29535 () | 51651..51872 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| Y979_RS26945 () | 51865..52278 | + | 414 | WP_000549589.1 | hypothetical protein | - |
| Y979_RS26950 () | 52271..52744 | + | 474 | WP_000549566.1 | hypothetical protein | - |
| Y979_RS26955 () | 52824..53042 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| Y979_RS31345 () | 53070..53417 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| Y979_RS26965 () | 53543..56173 | + | 2631 | WP_012917677.1 | type IV secretion system protein TraC | - |
| Y979_RS26970 () | 56170..56556 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| Y979_RS26975 () | 56553..57185 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| Y979_RS26980 () | 57182..58174 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| Y979_RS26985 () | 58204..58509 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| Y979_RS26990 () | 58518..59156 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Y979_RS26995 () | 59153..61003 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| Y979_RS27000 () | 61030..61287 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| Y979_RS27005 () | 61280..62023 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| Y979_RS27010 () | 62037..62381 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| Y979_RS27015 () | 62500..62784 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| Y979_RS27020 () | 62771..63316 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| Y979_RS27025 () | 63246..63593 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| Y979_RS27030 () | 63541..63966 | + | 426 | WP_001444237.1 | F-type conjugal transfer protein TrbF | - |
| Y979_RS27035 () | 63953..65326 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| Y979_RS27040 () | 65323..68145 | + | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| Y979_RS27045 () | 68161..68646 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| Y979_RS27050 () | 68695..69426 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| Y979_RS27055 () | 69629..70366 | + | 738 | WP_000199905.1 | hypothetical protein | - |
| Y979_RS27060 () | 70417..72737 | + | 2321 | Protein_85 | Coupling protein TraD | VF |
| Y979_RS27065 () | 72737..78007 | + | 5271 | WP_000948354.1 | Multifunctional conjugation protein TraI | Relaxase |
| Y979_RS27070 () | 78027..78773 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| Y979_RS27075 () | 78832..79692 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| Y979_RS27080 () | 79795..80355 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| Y979_RS27085 () | 80484..80696 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| Y979_RS27090 () | 80941..81402 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| Y979_RS27095 () | 81448..81657 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| Y979_RS27100 () | 81695..82285 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|