MGE detailed information
MGE type: Conjugative plasmid MGE length: 94712 bp
Accession: NZ_CP011064 Location: 1..94712 Organism: Escherichia coli str. Sanji Replicon: plasmid pSJ_94
Accession: NZ_CP011064 Location: 1..94712 Organism: Escherichia coli str. Sanji Replicon: plasmid pSJ_94
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y979_RS26100 () | 473..691 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| Y979_RS26105 () | 693..998 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| Y979_RS26110 () | 999..1805 | + | 807 | WP_000016970.1 | site-specific integrase | - |
| Y979_RS26115 () | 2527..3282 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| Y979_RS26120 () | 3870..5036 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| Y979_RS26125 () | 5036..6007 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| Y979_RS26130 () | 6745..7647 | + | 903 | WP_064766247.1 | DUF1281 domain-containing protein | - |
| Y979_RS30275 () | 7651..7955 | + | 305 | Protein_7 | hypothetical protein | - |
| Y979_RS26140 () | 8032..8715 | + | 684 | WP_032181561.1 | DNA methylase | - |
| Y979_RS26145 () | 8716..8937 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| Y979_RS26150 () | 8951..9385 | + | 435 | WP_001546462.1 | DUF1380 family protein | - |
| Y979_RS31310 () | 9430..10200 | + | 771 | WP_001006251.1 | hypothetical protein | - |
| Y979_RS26160 () | 10737..11039 | + | 303 | WP_001666994.1 | antirestriction protein | - |
| Y979_RS26165 () | 11086..11508 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| Y979_RS26170 () | 11505..11696 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| Y979_RS30915 () | 11968..12216 | - | 249 | WP_071781657.1 | hypothetical protein | - |
| Y979_RS26180 () | 12733..12963 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| Y979_RS26185 () | 13015..14376 | + | 1362 | WP_039023242.1 | DUF3560 domain-containing protein | - |
| Y979_RS26190 () | 14423..14986 | + | 564 | WP_029702196.1 | class I SAM-dependent methyltransferase | - |
| Y979_RS31325 () | 15138..15416 | + | 279 | WP_071811814.1 | hypothetical protein | - |
| Y979_RS26195 () | 16347..16916 | - | 570 | WP_089634947.1 | hypothetical protein | - |
| Y979_RS26210 () | 18220..18978 | + | 759 | Protein_22 | site-specific integrase | - |
| Y979_RS26215 () | 19136..20146 | + | 1011 | WP_000053332.1 | substrate-binding domain-containing protein | - |
| Y979_RS26220 () | 20242..22368 | + | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| Y979_RS26225 () | 22431..23708 | + | 1278 | WP_001083369.1 | MFS transporter | - |
| Y979_RS26230 () | 23705..25138 | + | 1434 | WP_024170639.1 | glycoside hydrolase family 32 protein | - |
| Y979_RS26235 () | 25333..26727 | + | 1395 | WP_001037799.1 | carbohydrate porin | - |
| Y979_RS30930 () | 26973..27077 | - | 105 | Protein_28 | thiosulfate reductase cytochrome B subunit | - |
| Y979_RS26245 () | 27134..27827 | + | 694 | Protein_29 | IS1 family transposase IS1A | Transposase |
| Y979_RS26250 () | 27843..28466 | + | 624 | WP_000912556.1 | potassium channel family protein | - |
| Y979_RS29365 () | 28551..28802 | + | 252 | Protein_31 | iron-containing alcohol dehydrogenase | - |
| Y979_RS29370 () | 29091..29408 | - | 318 | Protein_32 | IS110 family transposase | - |
| Y979_RS30295 () | 29563..29668 | + | 106 | Protein_33 | plasmid SOS inhibition protein A | - |
| - () | 29637..29835 | + | 199 | NuclAT_0 | - | - |
| - () | 29637..29835 | + | 199 | NuclAT_0 | - | - |
| - () | 29637..29835 | + | 199 | NuclAT_0 | - | - |
| - () | 29637..29835 | + | 199 | NuclAT_0 | - | - |
| Y979_RS26255 () | 29900..30058 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| Y979_RS31550 () | 30726..30932 | + | 207 | WP_000275854.1 | hypothetical protein | - |
| Y979_RS26270 () | 30957..31244 | + | 288 | WP_000107242.1 | hypothetical protein | - |
| Y979_RS26275 () | 31363..32184 | + | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| Y979_RS26280 () | 32480..33052 | - | 573 | WP_000949660.1 | hypothetical protein | VF |
| Y979_RS26285 () | 33422..33805 | + | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| Y979_RS26290 () | 33996..34643 | + | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| Y979_RS29375 () | 34779..34994 | + | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| Y979_RS26295 () | 35037..35402 | + | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| Y979_RS26300 () | 35417..35728 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| Y979_RS26305 () | 35750..36316 | + | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| Y979_RS26310 () | 36327..37031 | + | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| Y979_RS26315 () | 37031..38458 | + | 1428 | WP_001553836.1 | conjugal transfer protein TraB | - |
| Y979_RS26320 () | 38448..39038 | + | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| Y979_RS30945 () | 39025..39162 | + | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| Y979_RS30300 () | 39184..39345 | + | 162 | WP_000741714.1 | conjugal transfer protein TrbD | - |
| Y979_RS26330 () | 39338..39589 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| Y979_RS26335 () | 39586..40101 | + | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
| Y979_RS29380 () | 40236..40457 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| Y979_RS26340 () | 40617..43244 | + | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
| Y979_RS26345 () | 43241..43627 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| Y979_RS26350 () | 43624..44256 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| Y979_RS26355 () | 44253..45245 | + | 993 | WP_001553833.1 | conjugal transfer pilus assembly protein TraU | - |
| Y979_RS26360 () | 45254..45892 | + | 639 | WP_001553832.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Y979_RS26365 () | 45889..47697 | + | 1809 | WP_039023153.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| Y979_RS26370 () | 47724..47981 | + | 258 | WP_039023152.1 | conjugal transfer protein TrbE | - |
| Y979_RS26375 () | 47974..48717 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| Y979_RS26380 () | 48733..49080 | + | 348 | WP_001287894.1 | conjugal transfer protein TrbA | - |
| Y979_RS26385 () | 49199..49483 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| Y979_RS26390 () | 49470..50015 | + | 546 | WP_016236310.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| Y979_RS26395 () | 49945..50307 | + | 363 | WP_071550055.1 | P-type conjugative transfer protein TrbJ | - |
| Y979_RS26400 () | 50307..51680 | + | 1374 | WP_039023150.1 | conjugal transfer protein TraH | - |
| Y979_RS26405 () | 51677..54496 | + | 2820 | WP_039023149.1 | conjugal transfer mating pair stabilization protein TraG | - |
| Y979_RS26410 () | 54515..55012 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| Y979_RS26415 () | 55044..55775 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| Y979_RS26420 () | 56028..58262 | + | 2235 | WP_062914766.1 | type IV conjugative transfer system coupling protein TraD | - |
| Y979_RS26425 () | 58271..58669 | - | 399 | WP_039023147.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| Y979_RS26430 () | 58669..58896 | - | 228 | WP_039023146.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| Y979_RS26435 () | 58978..64247 | + | 5270 | Protein_72 | Multifunctional conjugation protein TraI | Relaxase |
| Y979_RS26440 () | 64523..66064 | + | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| Y979_RS26445 () | 66079..66825 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| Y979_RS26450 () | 66853..67599 | + | 747 | WP_052273601.1 | conjugal transfer pilus acetylase TraX | - |
| Y979_RS26455 () | 67654..68214 | + | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
| Y979_RS26460 () | 68345..68554 | + | 210 | WP_039023209.1 | hypothetical protein | - |
| Y979_RS26465 () | 68966..69592 | + | 627 | WP_029702149.1 | hypothetical protein | - |
| Y979_RS26470 () | 69744..70313 | + | 570 | WP_029702150.1 | DUF2726 domain-containing protein | - |
| Y979_RS31555 () | 70688..70954 | + | 267 | WP_087757657.1 | hypothetical protein | - |
| - () | 71093..71154 | - | 62 | NuclAT_1 | - | - |
| - () | 71093..71154 | - | 62 | NuclAT_1 | - | - |
| - () | 71093..71154 | - | 62 | NuclAT_1 | - | - |
| - () | 71093..71154 | - | 62 | NuclAT_1 | - | - |
| Y979_RS27200 () | 71141..71347 | + | 207 | WP_032215358.1 | type I toxin-antitoxin system Hok family toxin | - |
| Y979_RS26485 () | 71631..71888 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| Y979_RS26490 () | 72124..72198 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| Y979_RS26495 () | 72191..73048 | + | 858 | WP_029702152.1 | incFII family plasmid replication initiator RepA | - |
| Y979_RS31560 () | 73749..73889 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| Y979_RS26500 () | 73987..74640 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| Y979_RS26505 () | 74843..75547 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| Y979_RS26510 () | 75605..78019 | + | 2415 | Protein_88 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| Y979_RS30960 () | 78053..78157 | + | 105 | Protein_89 | IS5/IS1182 family transposase | - |
| Y979_RS26515 () | 78307..78939 | - | 633 | Protein_90 | histidine-type phosphatase | - |
| Y979_RS26520 () | 79061..79546 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| Y979_RS26525 () | 79571..80056 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| Y979_RS26530 () | 80043..80738 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| Y979_RS26535 () | 80743..81873 | - | 1131 | WP_000729219.1 | ABC transporter permease | - |
| Y979_RS26540 () | 81863..83146 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| Y979_RS26545 () | 83149..84528 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| Y979_RS26550 () | 84632..85159 | - | 528 | WP_000178050.1 | iron transporter | - |
| Y979_RS26555 () | 85200..87086 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| Y979_RS26560 () | 87433..88248 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| Y979_RS26565 () | 88431..88937 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| Y979_RS26570 () | 88927..89085 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| Y979_RS31565 () | 89235..89348 | - | 114 | Protein_102 | IS6 family transposase | - |
| Y979_RS26580 () | 89548..90245 | + | 698 | Protein_103 | IS1 family transposase IS1X2 | Transposase |
| Y979_RS30325 () | 90395..91081 | + | 687 | Protein_104 | IS1 family transposase IS1S | Transposase |
| Y979_RS26600 () | 91335..92357 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| Y979_RS26605 () | 92342..93907 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| Y979_RS26610 () | 93982..94398 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | - |
| Y979_RS26615 () | 94395..94625 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|