MGE detailed information
MGE type: Prophage MGE length: 21754 bp
Accession: NZ_CP010228 Location: 1772384..1794137 Organism: Escherichia coli strain S3 Replicon: chromosome
Accession: NZ_CP010228 Location: 1772384..1794137 Organism: Escherichia coli strain S3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG65_RS09260 () | 1767765..1768475 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| RG65_RS09265 () | 1768478..1769038 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| RG65_RS09270 () | 1769073..1769414 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| RG65_RS09275 () | 1769549..1769875 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| RG65_RS09285 () | 1770081..1771295 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| RG65_RS09290 () | 1771307..1772326 | + | 1020 | WP_000836082.1 | Zn-dependent oxidoreductase | - |
| RG65_RS09295 () | 1772384..1772512 | + | 129 | WP_001389342.1 | hypothetical protein | - |
| RG65_RS09300 () | 1772514..1772681 | - | 168 | Protein_1691 | site-specific integrase | - |
| RG65_RS09305 () | 1772680..1774443 | - | 1764 | Protein_1692 | exonuclease | - |
| RG65_RS09310 () | 1774536..1774727 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| RG65_RS09315 () | 1774724..1774912 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| RG65_RS09340 () | 1776790..1777728 | + | 939 | WP_213056067.1 | ISNCY family transposase ISCARN112 | Transposase |
| RG65_RS09345 () | 1778165..1778497 | - | 333 | WP_001301033.1 | protein FlxA | - |
| RG65_RS09355 () | 1778700..1779005 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| RG65_RS09360 () | 1779030..1779269 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| RG65_RS09365 () | 1779269..1779556 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| RG65_RS09370 () | 1779628..1779783 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| RG65_RS09375 () | 1780000..1780251 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| RG65_RS09380 () | 1780318..1780596 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| RG65_RS09385 () | 1780598..1781647 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| RG65_RS09390 () | 1781661..1782413 | + | 753 | WP_073507359.1 | antitermination protein | - |
| RG65_RS24860 () | 1782691..1782780 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| RG65_RS09395 () | 1782835..1783047 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| RG65_RS09400 () | 1783348..1783563 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| RG65_RS25380 () | 1783927..1784097 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| RG65_RS09405 () | 1784317..1784532 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| RG65_RS09410 () | 1784537..1784848 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| RG65_RS09415 () | 1784845..1785378 | + | 534 | WP_001092971.1 | lysozyme | - |
| RG65_RS09420 () | 1785375..1785872 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| RG65_RS09425 () | 1786235..1786447 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| RG65_RS09430 () | 1786458..1786646 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| RG65_RS24865 () | 1786649..1786714 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| RG65_RS09435 () | 1786794..1786949 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| RG65_RS09440 () | 1787121..1787294 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| RG65_RS09445 () | 1787446..1787856 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| RG65_RS09450 () | 1787914..1788147 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| RG65_RS09455 () | 1788536..1789081 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| RG65_RS09460 () | 1789056..1789298 | + | 243 | Protein_1722 | phage terminase large subunit family protein | - |
| RG65_RS09465 () | 1789307..1790254 | + | 948 | WP_072315226.1 | phage tail protein | - |
| RG65_RS09470 () | 1790254..1790829 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| RG65_RS09475 () | 1790927..1791517 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| RG65_RS09480 () | 1791834..1792067 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| RG65_RS24870 () | 1792136..1792249 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| RG65_RS09485 () | 1792770..1794137 | + | 1368 | Protein_1728 | MHS family MFS transporter | - |
| RG65_RS09490 () | 1794226..1795686 | + | 1461 | WP_073507361.1 | mannitol dehydrogenase family protein | - |
| RG65_RS09495 () | 1795722..1795925 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| RG65_RS09500 () | 1796103..1796789 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| RG65_RS09505 () | 1796878..1797624 | - | 747 | WP_001296081.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.01 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.009 |