MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 104435 bp
Accession: NZ_CP010122 Location: 3788869..3893303 Organism: Escherichia coli strain C5 Replicon: chromosome
Accession: NZ_CP010122 Location: 3788869..3893303 Organism: Escherichia coli strain C5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG28_RS20120 () | 3784284..3784574 | + | 291 | WP_040092199.1 | DUF1364 domain-containing protein | - |
| RG28_RS20125 () | 3784571..3785113 | + | 543 | WP_073521023.1 | DUF1133 family protein | - |
| RG28_RS20145 () | 3787165..3788211 | - | 1047 | WP_061352042.1 | site-specific DNA-methyltransferase | - |
| RG28_RS20150 () | 3788362..3788559 | - | 198 | WP_000917767.1 | hypothetical protein | - |
| RG28_RS20155 () | 3789070..3790173 | + | 1104 | WP_057697525.1 | porin OmpC | - |
| RG28_RS20160 () | 3790354..3790737 | - | 384 | WP_057780576.1 | antitermination protein | - |
| RG28_RS20165 () | 3790737..3790994 | - | 258 | WP_001064803.1 | hypothetical protein | - |
| RG28_RS20170 () | 3790991..3792391 | - | 1401 | WP_061351023.1 | replicative DNA helicase | - |
| RG28_RS20175 () | 3792388..3793266 | - | 879 | WP_000988199.1 | ATP-binding protein | - |
| RG28_RS20180 () | 3793277..3794119 | - | 843 | WP_052773596.1 | hypothetical protein | - |
| RG28_RS20185 () | 3794251..3794475 | - | 225 | WP_047089426.1 | hypothetical protein | - |
| RG28_RS20190 () | 3794472..3795338 | - | 867 | WP_171840557.1 | Rha family phage regulatory protein | - |
| RG28_RS20195 () | 3795423..3795713 | + | 291 | WP_157916595.1 | SWIM zinc finger family protein | - |
| RG28_RS20200 () | 3795828..3796157 | + | 330 | WP_072301615.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG28_RS20205 () | 3796147..3796455 | + | 309 | WP_000147080.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| RG28_RS20210 () | 3796474..3796650 | - | 177 | WP_001197746.1 | DUF4222 domain-containing protein | - |
| RG28_RS20215 () | 3796670..3797377 | - | 708 | WP_061352046.1 | Rha family transcriptional regulator | - |
| RG28_RS20220 () | 3797377..3797688 | - | 312 | WP_000932280.1 | hypothetical protein | - |
| RG28_RS20225 () | 3797764..3798084 | - | 321 | WP_000186943.1 | hypothetical protein | - |
| RG28_RS20230 () | 3798173..3798400 | + | 228 | WP_000132761.1 | hypothetical protein | - |
| RG28_RS20235 () | 3798522..3798794 | - | 273 | WP_057697517.1 | helix-turn-helix domain-containing protein | - |
| RG28_RS20240 () | 3798928..3799617 | + | 690 | WP_057697516.1 | LexA family transcriptional regulator | - |
| RG28_RS20245 () | 3799763..3800224 | + | 462 | WP_072301616.1 | helix-turn-helix transcriptional regulator | - |
| RG28_RS20250 () | 3800380..3800586 | + | 207 | WP_057698620.1 | hypothetical protein | - |
| RG28_RS20255 () | 3800971..3801552 | + | 582 | WP_061352044.1 | hypothetical protein | - |
| RG28_RS20265 () | 3801915..3802742 | + | 828 | WP_042973948.1 | serine protease | - |
| RG28_RS20270 () | 3802912..3803664 | + | 753 | Protein_3710 | IS110 family transposase ISEc11 | Transposase |
| RG28_RS20275 () | 3804004..3806037 | - | 2034 | WP_061352008.1 | M13 family metallopeptidase | - |
| RG28_RS20280 () | 3806194..3807338 | - | 1145 | Protein_3712 | NERD domain-containing protein/DEAD/DEAH box helicase | - |
| RG28_RS20285 () | 3807516..3808091 | - | 576 | WP_021512910.1 | Attachment invasion locus protein | VF |
| RG28_RS20295 () | 3808634..3808873 | - | 240 | WP_057698635.1 | hypothetical protein | - |
| RG28_RS20300 () | 3808880..3809152 | - | 273 | WP_057698636.1 | hypothetical protein | - |
| RG28_RS20305 () | 3809139..3809738 | - | 600 | WP_061352007.1 | hypothetical protein | - |
| RG28_RS20315 () | 3809995..3810852 | - | 858 | WP_061352011.1 | hypothetical protein | - |
| RG28_RS20320 () | 3810910..3811143 | - | 234 | WP_040084980.1 | hypothetical protein | - |
| RG28_RS20325 () | 3811140..3812534 | - | 1395 | WP_073521247.1 | VENN motif pre-toxin domain-containing protein | - |
| RG28_RS20330 () | 3812649..3812999 | - | 351 | WP_073521248.1 | DUF596 domain-containing protein | - |
| RG28_RS20335 () | 3813005..3813547 | - | 543 | WP_072526423.1 | hypothetical protein | - |
| RG28_RS20340 () | 3813745..3814206 | - | 462 | WP_073521112.1 | hypothetical protein | - |
| RG28_RS20345 () | 3814193..3823051 | - | 8859 | WP_073521113.1 | 16S rRNA endonuclease CdiA | VF |
| RG28_RS20350 () | 3823067..3823594 | - | 528 | WP_001243916.1 | Leukotoxin-activating lysine-acyltransferase LtxC | VF |
| RG28_RS20355 () | 3823604..3825256 | - | 1653 | WP_073521249.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| RG28_RS20360 () | 3825936..3826127 | + | 192 | WP_001287884.1 | DUF4222 domain-containing protein | - |
| RG28_RS20365 () | 3826180..3826413 | - | 234 | WP_000124191.1 | hypothetical protein | - |
| RG28_RS20370 () | 3826509..3827132 | - | 624 | WP_001364382.1 | hypothetical protein | - |
| RG28_RS31925 () | 3827266..3827436 | - | 171 | WP_073521114.1 | hypothetical protein | - |
| RG28_RS20380 () | 3827442..3827855 | - | 414 | WP_063073982.1 | hypothetical protein | - |
| RG28_RS20385 () | 3827852..3828235 | - | 384 | WP_000270991.1 | hypothetical protein | - |
| RG28_RS20390 () | 3828495..3829064 | - | 570 | WP_000148635.1 | inovirus Gp2 family protein | - |
| RG28_RS20405 () | 3829804..3830016 | - | 213 | WP_000453333.1 | hemolysin expression modulator Hha | - |
| RG28_RS20410 () | 3830719..3830925 | + | 207 | WP_001025263.1 | AlpA family transcriptional regulator | - |
| RG28_RS20415 () | 3831011..3831583 | + | 573 | WP_001170556.1 | hypothetical protein | - |
| RG28_RS20420 () | 3831698..3833203 | - | 1506 | WP_001486476.1 | DUF3987 domain-containing protein | - |
| RG28_RS20425 () | 3834386..3835258 | + | 873 | WP_061356580.1 | GTPase family protein | - |
| RG28_RS30720 () | 3835387..3836601 | + | 1215 | Protein_3738 | IS3 family transposase IS629 | Transposase |
| RG28_RS20450 () | 3837008..3838551 | + | 1544 | Protein_3739 | IS21 family transposase ISEc12 | Transposase |
| RG28_RS20455 () | 3838566..3839312 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| RG28_RS20465 () | 3839533..3842379 | + | 2847 | WP_073521116.1 | Ag43/Cah family autotransporter adhesin | - |
| RG28_RS20470 () | 3842707..3843525 | + | 819 | WP_001234392.1 | DUF945 domain-containing protein | - |
| RG28_RS20475 () | 3843617..3844102 | + | 486 | WP_000213706.1 | antirestriction protein | - |
| RG28_RS20480 () | 3844117..3844593 | + | 477 | WP_021566731.1 | RadC family protein | - |
| RG28_RS20485 () | 3844662..3844883 | + | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| RG28_RS20495 () | 3845046..3845414 | + | 369 | WP_001406130.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| RG28_RS20500 () | 3845504..3845881 | + | 378 | WP_000854742.1 | TA system toxin CbtA family protein | Toxin Detail |
| RG28_RS20505 () | 3845878..3846366 | + | 489 | WP_000777551.1 | hypothetical protein | - |
| RG28_RS20510 () | 3846378..3846575 | + | 198 | WP_000839267.1 | DUF957 domain-containing protein | - |
| RG28_RS31420 () | 3847771..3848280 | + | 510 | WP_187655784.1 | hypothetical protein | - |
| RG28_RS20550 () | 3850479..3852221 | + | 1743 | WP_077897884.1 | Outer membrane protein IcsA autotransporter | VF |
| RG28_RS31425 () | 3852529..3852630 | + | 102 | Protein_3753 | DUF4942 domain-containing protein | - |
| RG28_RS20555 () | 3852700..3854235 | + | 1536 | WP_032085042.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| RG28_RS20560 () | 3854570..3855106 | - | 537 | WP_000942795.1 | Type II secretion system protein M | VF |
| RG28_RS20565 () | 3855108..3856286 | - | 1179 | WP_000094963.1 | Type II secretion system protein L | VF |
| RG28_RS20570 () | 3856283..3857260 | - | 978 | WP_000633208.1 | Putative type II secretion system protein K | VF |
| RG28_RS20575 () | 3857257..3857862 | - | 606 | WP_021534527.1 | Type II secretion system protein J | VF |
| RG28_RS20580 () | 3857859..3858230 | - | 372 | WP_000820104.1 | Type II secretion system protein I | VF |
| RG28_RS20585 () | 3858227..3858790 | - | 564 | WP_001115154.1 | Type II secretion system protein H | VF |
| RG28_RS20590 () | 3858794..3859249 | - | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| RG28_RS20595 () | 3859266..3860489 | - | 1224 | WP_001173453.1 | Type II secretion system protein F | VF |
| RG28_RS20600 () | 3860489..3861982 | - | 1494 | WP_000249322.1 | Type II secretion system protein E | VF |
| RG28_RS20605 () | 3861982..3864042 | - | 2061 | WP_000498824.1 | Type II secretion system protein D | VF |
| RG28_RS20610 () | 3864089..3864235 | - | 147 | Protein_3765 | bacterial type II/III secretion system short domain protein | - |
| RG28_RS20615 () | 3864265..3865224 | - | 960 | WP_000135067.1 | Type II secretion system protein C | VF |
| RG28_RS20620 () | 3865242..3865652 | - | 411 | WP_021564872.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| RG28_RS20625 () | 3865718..3866527 | - | 810 | WP_001297673.1 | Leader peptidase PppA | VF |
| RG28_RS20630 () | 3866675..3871240 | - | 4566 | WP_021564870.1 | hypothetical protein | VF |
| RG28_RS20645 () | 3871726..3873408 | - | 1683 | WP_000259303.1 | glycolate permease GlcA | - |
| RG28_RS20650 () | 3873764..3875935 | - | 2172 | WP_021564869.1 | malate synthase G | - |
| RG28_RS20655 () | 3875957..3876361 | - | 405 | WP_000853256.1 | protein GlcG | - |
| RG28_RS20660 () | 3876366..3877589 | - | 1224 | WP_001194680.1 | glycolate oxidase subunit GlcF | - |
| RG28_RS20665 () | 3877600..3878652 | - | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| RG28_RS20670 () | 3878652..3880151 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| RG28_RS20675 () | 3880402..3881166 | + | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| RG28_RS20680 () | 3881173..3882315 | - | 1143 | WP_000388786.1 | DNA-binding protein | - |
| RG28_RS20690 () | 3882686..3884407 | + | 1722 | WP_001355868.1 | 4-hydroxyphenylalkanoate adenylyltransferase | VF |
| RG28_RS20695 () | 3884404..3885318 | + | 915 | WP_001077137.1 | NAD-dependent epimerase/dehydratase family protein | - |
| RG28_RS20700 () | 3885350..3885598 | + | 249 | WP_000248097.1 | acyl carrier protein | - |
| RG28_RS20705 () | 3885598..3886770 | + | 1173 | WP_000524967.1 | 8-amino-7-oxononanoate synthase | VF |
| RG28_RS20710 () | 3886805..3887884 | - | 1080 | WP_001300858.1 | LPS export ABC transporter permease LptG | - |
| RG28_RS20715 () | 3887881..3888951 | - | 1071 | WP_000779644.1 | LPS export ABC transporter permease LptF | - |
| RG28_RS20720 () | 3888982..3889542 | - | 561 | WP_001298770.1 | YtfJ family protein | - |
| RG28_RS20725 () | 3889554..3890378 | - | 825 | WP_000984977.1 | hypothetical protein | - |
| RG28_RS20730 () | 3890378..3891727 | - | 1350 | WP_073521120.1 | lipopolysaccharide biosynthesis protein | - |
| RG28_RS20735 () | 3891773..3892531 | - | 759 | WP_000339512.1 | hypothetical protein | - |
| RG28_RS20740 () | 3892563..3893276 | - | 714 | WP_001076218.1 | thymidylate kinase | - |
| RG28_RS20745 () | 3893450..3894142 | + | 693 | WP_001190780.1 | thymidylate kinase | - |
| RG28_RS20750 () | 3894191..3895690 | - | 1500 | WP_000933272.1 | inorganic phosphate transporter PitB | - |
| RG28_RS20755 () | 3895982..3897841 | - | 1860 | WP_021564867.1 | bifunctional glutathionylspermidine amidase/synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|