MGE detailed information
MGE type: Genomic_island MGE length: 18720 bp
Accession: NZ_CP008805 Location: 5452183..5470902 Organism: Escherichia coli O157:H7 str. SS17 Replicon: chromosome
Accession: NZ_CP008805 Location: 5452183..5470902 Organism: Escherichia coli O157:H7 str. SS17 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SS17_RS28085 () | 5447334..5448512 | - | 1179 | WP_001089435.1 | MFS transporter | - |
| SS17_RS28090 () | 5448580..5449422 | - | 843 | WP_000746206.1 | YjiK family protein | - |
| SS17_RS28095 () | 5449688..5451871 | - | 2184 | WP_000535062.1 | T3SS effector pentapeptide repeat protein EspX6 | - |
| SS17_RS28100 () | 5452183..5452449 | - | 267 | WP_000657677.1 | DUF3343 domain-containing protein | - |
| SS17_RS28105 () | 5452446..5453213 | - | 768 | WP_000222489.1 | hypothetical protein | - |
| SS17_RS28110 () | 5453223..5454374 | - | 1152 | WP_001301805.1 | 2-hydroxyacyl-CoA dehydratase subunit D | - |
| SS17_RS28115 () | 5454490..5455761 | - | 1272 | WP_001037406.1 | DUF445 domain-containing protein | - |
| SS17_RS28120 () | 5455802..5457034 | - | 1233 | WP_001136983.1 | multidrug efflux MFS transporter MdtM | - |
| SS17_RS28125 () | 5457501..5458253 | + | 753 | Protein_5294 | Rpn family recombination-promoting nuclease/putative transposase | - |
| SS17_RS34215 () | 5458258..5458458 | + | 201 | WP_001310455.1 | hypothetical protein | - |
| SS17_RS28130 () | 5458701..5460113 | - | 1413 | WP_000199295.1 | PLP-dependent aminotransferase family protein | - |
| SS17_RS28135 () | 5460290..5460454 | + | 165 | WP_038431159.1 | DUF1127 domain-containing protein | - |
| SS17_RS28140 () | 5460549..5462642 | + | 2094 | WP_010905017.1 | DUF262 domain-containing protein | - |
| SS17_RS28145 () | 5462689..5463030 | - | 342 | WP_000132630.1 | endoribonuclease SymE | Toxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - () | 5463025..5463101 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| SS17_RS28150 () | 5463251..5465005 | - | 1755 | WP_000110082.1 | restriction endonuclease subunit S | - |
| SS17_RS28155 () | 5465005..5466474 | - | 1470 | WP_001302468.1 | type I restriction-modification system subunit M | - |
| SS17_RS28160 () | 5466541..5468973 | - | 2433 | WP_000819018.1 | DEAD/DEAH box helicase family protein | - |
| SS17_RS28165 () | 5469251..5469535 | + | 285 | WP_001304005.1 | DUF262 domain-containing protein | - |
| SS17_RS28170 () | 5469544..5470902 | + | 1359 | WP_001304004.1 | DUF262 domain-containing protein | - |
| SS17_RS28175 () | 5470971..5471927 | - | 957 | WP_001297640.1 | GTPase | - |
| SS17_RS28180 () | 5471938..5472141 | - | 204 | WP_000467859.1 | YbdD/YjiX family protein | - |
| SS17_RS28185 () | 5472191..5474341 | - | 2151 | WP_001298933.1 | pyruvate/proton symporter BtsT | - |
| SS17_RS28195 () | 5474634..5475176 | - | 543 | WP_000934391.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | NC_002655 | 5456776..5475497 | 0.001 | |||
| Escherichia coli O157:H7 str. Sakai | NC_002695 | 5426911..5445631 | 0 |