MGE detailed information
MGE type: Prophage MGE length: 55695 bp
Accession: NZ_CP007448 Location: 2638605..2694299 Organism: Yersinia enterocolitica LC20 Replicon: chromosome
Accession: NZ_CP007448 Location: 2638605..2694299 Organism: Yersinia enterocolitica LC20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC20_RS12665 () | 2634086..2634280 | + | 195 | WP_025378465.1 | hypothetical protein | - |
| LC20_RS12670 () | 2634846..2636057 | + | 1212 | WP_025378466.1 | sodium/glutamate symporter | - |
| LC20_RS12675 () | 2636129..2637001 | - | 873 | WP_025378467.1 | 23S rRNA pseudouridine(2604) synthase RluF | - |
| LC20_RS12680 () | 2637628..2638536 | + | 909 | WP_087769655.1 | serine hydrolase | - |
| LC20_RS12685 () | 2638605..2639779 | + | 1175 | WP_100273799.1 | IS3 family transposase ISSlo2 | Transposase |
| LC20_RS12690 () | 2639945..2640421 | + | 477 | WP_100273924.1 | hypothetical protein | - |
| LC20_RS12695 () | 2640483..2641691 | + | 1209 | WP_025378469.1 | IS256 family transposase ISEc39 | Transposase |
| LC20_RS12700 () | 2641774..2642040 | + | 267 | Protein_2442 | IS3 family transposase ISPeat2 | Transposase |
| LC20_RS12705 () | 2642092..2643177 | - | 1086 | WP_100273925.1 | IS3 family transposase ISAs20 | Transposase |
| LC20_RS12715 () | 2644739..2645221 | - | 483 | WP_100273926.1 | IS3 family transposase ISPa31 | Transposase |
| LC20_RS12720 () | 2645284..2646156 | + | 873 | Protein_2446 | IS3 family transposase ISEal1 | Transposase |
| LC20_RS12725 () | 2646218..2646805 | - | 588 | WP_025378471.1 | hypothetical protein | - |
| LC20_RS12735 () | 2647459..2648609 | + | 1151 | WP_087769681.1 | IS3 family transposase ISEal1 | Transposase |
| LC20_RS12740 () | 2648572..2648790 | - | 219 | WP_100273927.1 | hypothetical protein | - |
| LC20_RS12745 () | 2649409..2650632 | + | 1224 | WP_025378473.1 | IS91 family transposase ISVa3 | Transposase |
| LC20_RS12750 () | 2650772..2651347 | - | 576 | Protein_2451 | lysozyme | - |
| LC20_RS12755 () | 2651419..2651886 | - | 468 | WP_175020558.1 | hypothetical protein | - |
| LC20_RS12760 () | 2652012..2652434 | - | 423 | WP_025378476.1 | hypothetical protein | - |
| LC20_RS12765 () | 2652435..2652881 | - | 447 | WP_025378477.1 | SocA family protein | - |
| LC20_RS12770 () | 2653306..2653695 | - | 390 | WP_025378478.1 | hypothetical protein | - |
| LC20_RS12775 () | 2653698..2654102 | - | 405 | WP_025378479.1 | hypothetical protein | - |
| LC20_RS12780 () | 2654109..2655266 | - | 1158 | WP_025378480.1 | DUF3383 family protein | - |
| LC20_RS12785 () | 2655250..2655810 | - | 561 | WP_025378481.1 | hypothetical protein | - |
| LC20_RS12790 () | 2655810..2656229 | - | 420 | WP_025378482.1 | hypothetical protein | - |
| LC20_RS12795 () | 2656232..2656699 | - | 468 | WP_025378483.1 | hypothetical protein | - |
| LC20_RS12800 () | 2656696..2657103 | - | 408 | WP_025378484.1 | DUF4054 domain-containing protein | - |
| LC20_RS12805 () | 2657128..2657508 | - | 381 | WP_025378485.1 | hypothetical protein | - |
| LC20_RS12810 () | 2657511..2658446 | - | 936 | WP_025378486.1 | DUF2184 domain-containing protein | - |
| LC20_RS12815 () | 2658465..2659001 | - | 537 | WP_100273928.1 | hypothetical protein | - |
| LC20_RS12820 () | 2659001..2660200 | - | 1200 | WP_025378488.1 | DUF2213 domain-containing protein | - |
| LC20_RS12825 () | 2660212..2660961 | - | 750 | WP_025378489.1 | phage head morphogenesis protein | - |
| LC20_RS12830 () | 2661020..2662405 | - | 1386 | WP_025378490.1 | DUF1073 domain-containing protein | - |
| LC20_RS12835 () | 2662408..2664051 | - | 1644 | WP_025378491.1 | phage terminase large subunit | - |
| LC20_RS12840 () | 2664177..2664416 | + | 240 | WP_012105237.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LC20_RS12845 () | 2664406..2664690 | + | 285 | WP_025378492.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LC20_RS12850 () | 2664701..2665717 | - | 1017 | WP_025378493.1 | terminase small subunit | - |
| LC20_RS12855 () | 2665797..2666237 | + | 441 | WP_025378494.1 | hypothetical protein | - |
| LC20_RS12860 () | 2666439..2666693 | - | 255 | WP_042546137.1 | hypothetical protein | - |
| LC20_RS12865 () | 2666696..2667310 | - | 615 | WP_025378496.1 | hypothetical protein | - |
| LC20_RS12870 () | 2667307..2667816 | - | 510 | WP_025378497.1 | ParB/Srx family N-terminal domain-containing protein | - |
| LC20_RS12875 () | 2668158..2668733 | + | 576 | WP_025378498.1 | hypothetical protein | - |
| LC20_RS23775 () | 2668765..2668935 | - | 171 | WP_193588404.1 | hypothetical protein | - |
| LC20_RS12880 () | 2668970..2669296 | - | 327 | WP_025378499.1 | DUF2570 domain-containing protein | - |
| LC20_RS12885 () | 2669289..2669819 | - | 531 | WP_100273929.1 | lysozyme | - |
| LC20_RS12890 () | 2669819..2670034 | - | 216 | WP_100273930.1 | peptidoglycan-binding protein LysM | - |
| LC20_RS12895 () | 2670302..2671723 | + | 1422 | WP_025378502.1 | ParB N-terminal domain-containing protein | - |
| LC20_RS12900 () | 2671765..2672616 | - | 852 | WP_025378503.1 | DNA adenine methylase | - |
| LC20_RS12905 () | 2672745..2673110 | - | 366 | WP_025378504.1 | antitermination protein | - |
| LC20_RS12910 () | 2673152..2673430 | - | 279 | WP_025378505.1 | DUF1364 domain-containing protein | - |
| LC20_RS12915 () | 2673431..2674944 | + | 1514 | WP_100273802.1 | IS3 family transposase ISAs20 | Transposase |
| LC20_RS12920 () | 2674981..2675052 | - | 72 | Protein_2486 | DUF1364 family protein | - |
| LC20_RS12925 () | 2675061..2675654 | - | 594 | WP_025378506.1 | DUF1367 family protein | - |
| LC20_RS12930 () | 2675728..2675910 | - | 183 | WP_025378507.1 | hypothetical protein | - |
| LC20_RS12935 () | 2676058..2678118 | - | 2061 | WP_100273931.1 | DNA cytosine methyltransferase | - |
| LC20_RS12940 () | 2678115..2678615 | - | 501 | WP_025378509.1 | hypothetical protein | - |
| LC20_RS12945 () | 2678630..2679037 | - | 408 | WP_025378510.1 | replication protein | - |
| LC20_RS12950 () | 2679081..2680094 | - | 1014 | WP_025378511.1 | hypothetical protein | - |
| LC20_RS12955 () | 2680107..2680295 | - | 189 | WP_025378512.1 | hypothetical protein | - |
| LC20_RS12960 () | 2680288..2680539 | - | 252 | WP_025378513.1 | hypothetical protein | - |
| LC20_RS12965 () | 2680553..2680993 | - | 441 | WP_025378514.1 | hypothetical protein | - |
| LC20_RS12970 () | 2681034..2681231 | - | 198 | WP_042546153.1 | helix-turn-helix domain-containing protein | - |
| LC20_RS12975 () | 2681314..2681706 | + | 393 | WP_025378515.1 | helix-turn-helix domain-containing protein | - |
| LC20_RS12980 () | 2681879..2682097 | + | 219 | WP_025378516.1 | hypothetical protein | - |
| LC20_RS12985 () | 2682119..2682292 | + | 174 | WP_100273932.1 | DUF1482 family protein | - |
| LC20_RS12990 () | 2682306..2682638 | + | 333 | WP_025378517.1 | hypothetical protein | - |
| LC20_RS12995 () | 2682827..2683141 | + | 315 | WP_025378518.1 | hypothetical protein | - |
| LC20_RS13000 () | 2683155..2685308 | + | 2154 | WP_025378519.1 | hypothetical protein | - |
| LC20_RS13005 () | 2685305..2685817 | + | 513 | WP_025378520.1 | siphovirus Gp157 family protein | - |
| LC20_RS13010 () | 2685890..2686156 | + | 267 | WP_025378521.1 | excisionase | - |
| LC20_RS13015 () | 2686131..2687213 | + | 1083 | WP_025378522.1 | hypothetical protein ; Integrase | Integrase |
| - () | 2687284..2687384 | + | 101 | - | - | - |
| - () | 2687292..2687384 | - | 93 | - | - | - |
| LC20_RS13020 () | 2687531..2688739 | - | 1209 | WP_025378469.1 | IS256 family transposase ISEc39 | Transposase |
| LC20_RS13025 () | 2688879..2689220 | - | 342 | WP_025378523.1 | YebY family protein | - |
| LC20_RS13030 () | 2689317..2690201 | - | 885 | WP_025378524.1 | copper homeostasis membrane protein CopD | - |
| LC20_RS13035 () | 2690203..2690589 | - | 387 | WP_025378525.1 | CopC domain-containing protein YobA | - |
| LC20_RS13040 () | 2690981..2691490 | - | 510 | WP_025378526.1 | non-heme ferritin | - |
| LC20_RS13045 () | 2691885..2692118 | + | 234 | WP_025378527.1 | DNA polymerase III subunit theta | - |
| LC20_RS13050 () | 2692167..2693123 | - | 957 | WP_025378528.1 | prolyl aminopeptidase | - |
| LC20_RS13060 () | 2693640..2694299 | + | 660 | WP_025378529.1 | exodeoxyribonuclease X | - |
| LC20_RS13065 () | 2694314..2696368 | - | 2055 | WP_025378530.1 | prolyl oligopeptidase family serine peptidase | - |
| LC20_RS13070 () | 2696560..2696916 | - | 357 | WP_025378531.1 | protein YebF | - |
| LC20_RS13075 () | 2697021..2697329 | - | 309 | WP_025378532.1 | N(4)-acetylcytidine aminohydrolase | - |
| LC20_RS13080 () | 2697368..2697688 | - | 321 | WP_025378533.1 | YebG family protein | - |
| LC20_RS13085 () | 2697784..2699166 | - | 1383 | WP_025378534.1 | ATP-dependent RNA helicase DbpA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|