MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 74188 bp
Accession: NZ_CP006824 Location: 1015276..1089463 Organism: Helicobacter pylori oki422 Replicon: chromosome
Accession: NZ_CP006824 Location: 1015276..1089463 Organism: Helicobacter pylori oki422 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI422_RS04785 () | 1011041..1012054 | - | 1014 | WP_025366509.1 | LapA family protein | - |
| HPOKI422_RS04790 () | 1012064..1012516 | - | 453 | WP_001203887.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HPOKI422_RS04795 () | 1012530..1013399 | - | 870 | WP_000505053.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HPOKI422_RS04800 () | 1013480..1014095 | + | 616 | Protein_906 | recombination protein RecO | - |
| HPOKI422_RS04805 () | 1014105..1014761 | + | 657 | WP_025366510.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HPOKI422_RS04810 () | 1014764..1015330 | - | 567 | WP_025366511.1 | hypothetical protein | - |
| HPOKI422_RS04815 () | 1015396..1016028 | - | 633 | WP_025366512.1 | NAD(P)H-dependent oxidoreductase | - |
| HPOKI422_RS04820 () | 1016025..1016879 | - | 855 | WP_025277000.1 | prolipoprotein diacylglyceryl transferase | - |
| HPOKI422_RS04825 () | 1016889..1017617 | - | 729 | WP_025366513.1 | RluA family pseudouridine synthase | - |
| HPOKI422_RS04830 () | 1017629..1018810 | - | 1182 | WP_025276129.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HPOKI422_RS04835 () | 1018811..1019575 | - | 765 | WP_025366514.1 | zinc ribbon domain-containing protein | - |
| HPOKI422_RS04840 () | 1019585..1020316 | - | 732 | WP_025366515.1 | GTP cyclohydrolase I | - |
| HPOKI422_RS04845 () | 1020318..1021214 | - | 897 | WP_025276132.1 | glycine--tRNA ligase subunit alpha | - |
| HPOKI422_RS04850 () | 1021228..1022166 | - | 939 | WP_000401702.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HPOKI422_RS04855 () | 1022305..1024488 | - | 2184 | WP_025366516.1 | dynamin family protein | - |
| HPOKI422_RS08120 () | 1024485..1026817 | - | 2333 | Protein_918 | dynamin family protein | - |
| HPOKI422_RS04875 () | 1026819..1028414 | - | 1596 | WP_049818356.1 | dynamin family protein | - |
| HPOKI422_RS04880 () | 1028684..1028971 | - | 288 | WP_025276134.1 | virulence factor | - |
| HPOKI422_RS04885 () | 1029041..1029322 | - | 282 | WP_000880314.1 | DUF3240 family protein | - |
| HPOKI422_RS04890 () | 1029333..1032392 | - | 3060 | WP_025366517.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HPOKI422_RS04895 () | 1032392..1033441 | - | 1050 | WP_162471561.1 | sodium:proton antiporter | - |
| HPOKI422_RS04900 () | 1033462..1034760 | - | 1299 | WP_025276137.1 | TolC family protein | - |
| HPOKI422_RS04905 () | 1034750..1036855 | - | 2106 | WP_025276138.1 | glycine--tRNA ligase subunit beta | - |
| HPOKI422_RS04910 () | 1036968..1038044 | + | 1077 | WP_025366518.1 | hypothetical protein | - |
| HPOKI422_RS04915 () | 1038057..1039532 | + | 1476 | WP_025276140.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HPOKI422_RS04920 () | 1039547..1039828 | + | 282 | WP_025276141.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HPOKI422_RS04925 () | 1039925..1041244 | - | 1320 | WP_025366519.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HPOKI422_RS04930 () | 1041374..1042837 | + | 1464 | WP_025366520.1 | peptidylprolyl isomerase | - |
| HPOKI422_RS04935 () | 1042853..1044334 | + | 1482 | WP_025277007.1 | cell division protein FtsA | - |
| HPOKI422_RS04940 () | 1044465..1045622 | + | 1158 | WP_025366521.1 | cell division protein FtsZ | - |
| HPOKI422_RS04945 () | 1045980..1046873 | - | 894 | WP_025276145.1 | hypothetical protein | - |
| HPOKI422_RS04950 () | 1046855..1047387 | - | 533 | Protein_934 | hypothetical protein | - |
| HPOKI422_RS04955 () | 1047552..1048376 | - | 825 | WP_025276146.1 | mechanosensitive ion channel family protein | - |
| HPOKI422_RS08265 () | 1048590..1048713 | - | 124 | Protein_936 | DNA adenine methylase | - |
| HPOKI422_RS04960 () | 1048983..1049269 | - | 287 | Protein_937 | hypothetical protein | - |
| HPOKI422_RS04965 () | 1049320..1049877 | - | 558 | WP_001900775.1 | hypothetical protein | - |
| HPOKI422_RS04975 () | 1050633..1051706 | + | 1074 | WP_025276147.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPOKI422_RS04980 () | 1051786..1052469 | - | 684 | WP_025276148.1 | hypothetical protein | - |
| HPOKI422_RS04985 () | 1052541..1053803 | - | 1263 | WP_025277011.1 | P-type conjugative transfer protein TrbL | - |
| HPOKI422_RS08345 () | 1053943..1054083 | - | 141 | WP_162966674.1 | hypothetical protein | - |
| HPOKI422_RS04995 () | 1054135..1055533 | - | 1399 | Protein_943 | hypothetical protein | - |
| HPOKI422_RS05000 () | 1055537..1057720 | - | 2184 | WP_025366522.1 | hypothetical protein | - |
| HPOKI422_RS05005 () | 1057759..1059156 | - | 1398 | WP_025276151.1 | hypothetical protein | - |
| HPOKI422_RS05010 () | 1059163..1060176 | - | 1014 | WP_025366523.1 | DUF1738 domain-containing protein | - |
| HPOKI422_RS08350 () | 1060169..1060315 | - | 147 | WP_162966675.1 | hypothetical protein | - |
| HPOKI422_RS05015 () | 1060479..1067110 | + | 6632 | Protein_948 | DEAD/DEAH box helicase family protein | - |
| HPOKI422_RS05020 () | 1067187..1067405 | + | 219 | WP_000906664.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| HPOKI422_RS05025 () | 1067398..1067592 | + | 195 | WP_001114660.1 | type II toxin-antitoxin system HicA family toxin | - |
| HPOKI422_RS05030 () | 1067589..1068227 | + | 639 | WP_025276154.1 | IS607 family transposase ISCbo10 | Transposase |
| HPOKI422_RS05035 () | 1068214..1069443 | + | 1230 | WP_025366524.1 | IS607 family transposase ISTvo1 | Transposase |
| HPOKI422_RS08130 () | 1069515..1071290 | + | 1776 | Protein_953 | helicase | - |
| HPOKI422_RS05050 () | 1071557..1072213 | + | 657 | WP_025276156.1 | ParA family protein | - |
| HPOKI422_RS05055 () | 1072295..1072579 | + | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HPOKI422_RS05060 () | 1072611..1073795 | + | 1185 | WP_025276157.1 | hypothetical protein | - |
| HPOKI422_RS05065 () | 1073820..1075707 | - | 1888 | Protein_957 | relaxase/mobilization nuclease domain-containing protein | - |
| HPOKI422_RS05070 () | 1075966..1076280 | + | 315 | WP_025276158.1 | hypothetical protein | Antitoxin Detail |
| HPOKI422_RS05075 () | 1076273..1076554 | + | 282 | WP_015086299.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPOKI422_RS08310 () | 1076825..1078554 | - | 1730 | Protein_960 | Conjugal transfer protein TraG | VF |
| HPOKI422_RS05085 () | 1078555..1079112 | - | 558 | WP_025277016.1 | hypothetical protein | - |
| HPOKI422_RS05090 () | 1079113..1079403 | - | 291 | WP_000159826.1 | hypothetical protein | - |
| HPOKI422_RS05095 () | 1079400..1079855 | - | 456 | WP_025276161.1 | hypothetical protein | - |
| HPOKI422_RS05100 () | 1079905..1080792 | - | 888 | WP_025366525.1 | Type IV secretion system protein VirB11 | VF |
| HPOKI422_RS05105 () | 1080792..1081091 | - | 300 | WP_025309899.1 | hypothetical protein | - |
| HPOKI422_RS05110 () | 1081088..1081351 | - | 264 | WP_025276164.1 | hypothetical protein | - |
| HPOKI422_RS05115 () | 1081344..1081637 | - | 294 | WP_025276165.1 | hypothetical protein | - |
| HPOKI422_RS05120 () | 1081707..1082972 | - | 1266 | WP_025366526.1 | Type IV secretion system protein virB10 | VF |
| HPOKI422_RS05125 () | 1082972..1084489 | - | 1518 | WP_025276167.1 | hypothetical protein | VF |
| HPOKI422_RS08355 () | 1084489..1085658 | - | 1170 | Protein_970 | hypothetical protein | VF |
| HPOKI422_RS05140 () | 1085775..1087808 | - | 2034 | WP_025277018.1 | type IA DNA topoisomerase | - |
| HPOKI422_RS05150 () | 1087811..1090175 | - | 2365 | Protein_972 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| HPOKI422_RS05155 () | 1090222..1090488 | - | 267 | WP_017284177.1 | hypothetical protein | - |
| HPOKI422_RS05160 () | 1090489..1090791 | - | 303 | WP_025276170.1 | hypothetical protein | - |
| HPOKI422_RS05165 () | 1090788..1092311 | - | 1524 | WP_025276171.1 | hypothetical protein | - |
| HPOKI422_RS05170 () | 1092318..1092611 | - | 294 | WP_025276172.1 | hypothetical protein | - |
| HPOKI422_RS05175 () | 1092631..1093410 | - | 780 | WP_025366527.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|