MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 129419 bp
Accession: NZ_AP025221 Location: 1..129419 Organism: Escherichia coli strain 2017.11.01CC Replicon: plasmid p20171101CC-1
Accession: NZ_AP025221 Location: 1..129419 Organism: Escherichia coli strain 2017.11.01CC Replicon: plasmid p20171101CC-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH31_RS22900 (VEGS20_44360) | 1..882 | + | 882 | WP_072645557.1 | RepB family plasmid replication initiator protein | - |
| LPH31_RS22905 | 1248..1607 | + | 360 | WP_229430286.1 | hypothetical protein | - |
| LPH31_RS22910 (VEGS20_44370) | 2236..2544 | - | 309 | WP_229430287.1 | hypothetical protein | - |
| LPH31_RS22915 | 2599..3749 | - | 1151 | Protein_3 | IS30 family transposase IS30D | Transposase |
| LPH31_RS22920 | 3829..5437 | - | 1609 | Protein_4 | IS66-like element ISEc23 family transposase | - |
| LPH31_RS22925 (VEGS20_44420) | 5468..5818 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| LPH31_RS22930 (VEGS20_44430) | 5815..6240 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| LPH31_RS22935 (VEGS20_44440) | 6352..6609 | - | 258 | Protein_7 | IS3 family transposase ISEc52 | Transposase |
| LPH31_RS22940 (VEGS20_44450) | 6666..7232 | - | 567 | WP_072752459.1 | recombination-associated protein RdgC | - |
| LPH31_RS22945 (VEGS20_44460) | 7225..7509 | - | 285 | WP_001567974.1 | hypothetical protein | - |
| LPH31_RS22950 (VEGS20_44480) | 7971..8759 | + | 789 | WP_072752463.1 | hypothetical protein | - |
| LPH31_RS22955 (VEGS20_44490) | 8985..9221 | + | 237 | WP_001648123.1 | hypothetical protein | - |
| LPH31_RS23990 | 9256..9387 | + | 132 | WP_001113883.1 | hypothetical protein | - |
| LPH31_RS22960 (VEGS20_44500) | 9397..9789 | + | 393 | WP_001281115.1 | hypothetical protein | - |
| LPH31_RS22965 (VEGS20_44510) | 10125..11009 | + | 885 | WP_001113742.1 | RepB family plasmid replication initiator protein | - |
| LPH31_RS22970 (VEGS20_44520) | 11302..12111 | + | 810 | WP_229430288.1 | GIY-YIG nuclease family protein | - |
| LPH31_RS22975 (VEGS20_44530) | 12280..13476 | + | 1197 | WP_001285362.1 | AAA family ATPase | - |
| LPH31_RS22980 (VEGS20_44540) | 13493..14494 | + | 1002 | WP_000038866.1 | ParB family protein | - |
| LPH31_RS22985 (VEGS20_44550) | 14720..16426 | + | 1707 | WP_229430289.1 | hypothetical protein | - |
| LPH31_RS22990 (VEGS20_44560) | 16486..18075 | + | 1590 | WP_050010048.1 | hypothetical protein | - |
| LPH31_RS22995 (VEGS20_44570) | 18085..18900 | + | 816 | WP_229430290.1 | hypothetical protein | - |
| LPH31_RS23000 (VEGS20_44580) | 19053..19517 | + | 465 | WP_225562644.1 | hypothetical protein | - |
| LPH31_RS23005 (VEGS20_44590) | 19529..20038 | + | 510 | WP_000509940.1 | hypothetical protein | - |
| LPH31_RS23010 (VEGS20_44600) | 20198..21310 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| LPH31_RS23015 (VEGS20_44610) | 21504..21659 | - | 156 | WP_001352007.1 | type I toxin-antitoxin system toxin HokD | - |
| LPH31_RS23020 (VEGS20_44620) | 22057..22305 | + | 249 | Protein_25 | IS3 family transposase ISEhe3 | Transposase |
| LPH31_RS23025 | 22315..22446 | - | 132 | Protein_26 | IS3 family transposase ISEhe3 | Transposase |
| LPH31_RS23030 (VEGS20_44630) | 22590..23287 | + | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| LPH31_RS23035 | 23308..24052 | + | 745 | Protein_28 | IS3 family transposase | - |
| LPH31_RS23040 | 24073..25089 | + | 1017 | Protein_29 | IS256 family transposase ISSoEn2 | Transposase |
| LPH31_RS23045 (VEGS20_44680) | 25137..27311 | - | 2175 | WP_032176963.1 | Catabolite control protein A | VF |
| LPH31_RS23050 (VEGS20_44690) | 27645..28469 | + | 825 | WP_032203560.1 | MBL fold metallo-hydrolase | - |
| LPH31_RS23055 (VEGS20_44700) | 28482..29717 | + | 1236 | WP_032177316.1 | MFS transporter | - |
| LPH31_RS23060 (VEGS20_44710) | 29750..30463 | + | 714 | WP_229430291.1 | Protein SapB | VF |
| LPH31_RS23065 (VEGS20_44720) | 30652..31053 | - | 402 | WP_077875119.1 | VENN motif pre-toxin domain-containing protein | - |
| LPH31_RS23070 | 31154..31619 | - | 466 | Protein_35 | IS3 family transposase | - |
| LPH31_RS23075 (VEGS20_44740) | 31700..33208 | - | 1509 | WP_032203558.1 | group II intron reverse transcriptase/maturase | - |
| LPH31_RS23080 | 33881..34303 | - | 423 | Protein_37 | IS3 family transposase IS911 | Transposase |
| LPH31_RS23085 (VEGS20_44760) | 34286..35190 | + | 905 | Protein_38 | IS3 family transposase | - |
| LPH31_RS23090 | 35377..36538 | - | 1162 | Protein_39 | IS3 family transposase IS3 | Transposase |
| LPH31_RS23095 | 37626..38322 | + | 697 | WP_229430292.1 | IS1 family transposase | - |
| LPH31_RS23100 (VEGS20_44820) | 38480..39352 | - | 873 | WP_000794337.1 | hypothetical protein | - |
| LPH31_RS23105 (VEGS20_44830) | 39528..39992 | - | 465 | WP_001352013.1 | helix-turn-helix transcriptional regulator | - |
| LPH31_RS23110 | 40135..40832 | - | 698 | Protein_43 | IS1 family transposase | - |
| LPH31_RS23115 (VEGS20_44860) | 41090..41586 | + | 497 | Protein_44 | hypothetical protein | - |
| LPH31_RS23120 | 41986..42681 | + | 696 | Protein_45 | IS1 family transposase | - |
| LPH31_RS23125 (VEGS20_44900) | 42675..44300 | - | 1626 | WP_229430293.1 | hypothetical protein | Relaxase |
| LPH31_RS23130 (VEGS20_44910) | 44466..45434 | - | 969 | WP_074194686.1 | IS5 family transposase IS903B | Transposase |
| LPH31_RS23135 (VEGS20_44920) | 45821..45958 | + | 138 | Protein_48 | conjugal transfer protein TraH | - |
| LPH31_RS23140 (VEGS20_44930) | 45951..46539 | - | 589 | Protein_49 | IS3 family transposase ISEc52 | Transposase |
| LPH31_RS23145 (VEGS20_44940) | 46995..50492 | + | 3498 | WP_130568983.1 | Outer membrane protein IcsA autotransporter | VF |
| LPH31_RS23150 | 50667..50872 | - | 206 | Protein_51 | hypothetical protein | - |
| LPH31_RS23155 | 50871..50984 | + | 114 | Protein_52 | alkaline phosphatase | - |
| LPH31_RS23160 (VEGS20_44960) | 51353..51640 | - | 288 | WP_000222771.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LPH31_RS23165 (VEGS20_44970) | 51637..51888 | - | 252 | WP_001139206.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LPH31_RS23170 | 52471..56439 | + | 3969 | Protein_55 | helicase-related protein | - |
| LPH31_RS23175 (VEGS20_45000) | 56473..56970 | + | 498 | WP_229430294.1 | peptide-binding protein | - |
| LPH31_RS23180 (VEGS20_45020) | 57216..57725 | - | 510 | WP_024245513.1 | hypothetical protein | - |
| LPH31_RS23185 (VEGS20_45030) | 57725..58765 | - | 1041 | WP_130568994.1 | YaaC family protein | - |
| LPH31_RS23190 (VEGS20_45040) | 58856..59497 | - | 642 | WP_044697595.1 | hypothetical protein | - |
| LPH31_RS23195 | 59687..60019 | - | 333 | Protein_60 | Ref family protein | - |
| LPH31_RS23200 (VEGS20_45050) | 60292..61068 | + | 777 | WP_000691857.1 | MBL fold metallo-hydrolase | - |
| LPH31_RS23205 (VEGS20_45060) | 61084..62073 | + | 990 | WP_000104482.1 | HTH-type transcriptional regulator CdhR | VF |
| LPH31_RS23210 (VEGS20_45070) | 62338..64089 | - | 1752 | Protein_63 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LPH31_RS23215 | 64093..64485 | + | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| LPH31_RS23220 (VEGS20_45090) | 64623..65507 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| LPH31_RS23225 (VEGS20_45100) | 65539..66738 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| LPH31_RS23230 (VEGS20_45110) | 66844..67494 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LPH31_RS23235 (VEGS20_45120) | 67526..67768 | - | 243 | WP_000844627.1 | transposase | - |
| LPH31_RS23240 (VEGS20_45130) | 67826..70792 | - | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LPH31_RS23245 (VEGS20_45140) | 70796..71356 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| LPH31_RS23250 | 71666..73243 | + | 1578 | WP_229430276.1 | Aerotaxis receptor | VF |
| LPH31_RS23255 (VEGS20_45170) | 73520..74380 | - | 861 | WP_015058868.1 | Beta-lactamase TEM | ARG |
| LPH31_RS23260 (VEGS20_45180) | 74563..75120 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| LPH31_RS23265 (VEGS20_45200) | 75360..76328 | - | 969 | WP_000654812.1 | IS5 family transposase IS903B | Transposase |
| LPH31_RS23270 (VEGS20_45220) | 76344..79355 | + | 3012 | WP_229430295.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| LPH31_RS23275 (VEGS20_45230) | 79401..79637 | + | 237 | WP_016246569.1 | ester cyclase | - |
| LPH31_RS23280 | 79744..80383 | - | 640 | Protein_77 | recombinase family protein | - |
| LPH31_RS23285 (VEGS20_45260) | 80733..81044 | - | 312 | WP_016246567.1 | hypothetical protein | - |
| LPH31_RS23290 (VEGS20_45270) | 81095..82126 | - | 1032 | WP_000067534.1 | site-specific integrase | - |
| LPH31_RS23295 (VEGS20_45280) | 82134..82355 | - | 222 | WP_229430277.1 | creatininase | - |
| LPH31_RS23300 (VEGS20_45290) | 82993..83973 | - | 981 | WP_021559276.1 | IS5 family transposase ISKpn26 | Transposase |
| LPH31_RS23305 (VEGS20_45300) | 84428..84925 | - | 498 | WP_000019701.1 | 4Fe-4S binding protein | - |
| LPH31_RS23310 (VEGS20_45310) | 84955..85551 | - | 597 | WP_032203482.1 | molecular chaperone | - |
| LPH31_RS23315 (VEGS20_45320) | 85606..86382 | - | 777 | WP_000544912.1 | dimethyl sulfoxide reductase anchor subunit | - |
| LPH31_RS23320 (VEGS20_45330) | 86375..87001 | - | 627 | WP_000816147.1 | dimethylsulfoxide reductase subunit B | - |
| LPH31_RS23325 (VEGS20_45340) | 87015..89441 | - | 2427 | WP_000661392.1 | molybdopterin-dependent oxidoreductase | - |
| LPH31_RS23335 (VEGS20_45360) | 90607..90816 | + | 210 | WP_072663797.1 | c1 repressor inactivator | - |
| LPH31_RS23340 (VEGS20_45370) | 90927..91778 | + | 852 | WP_000611664.1 | phage repressor protein C1 | - |
| LPH31_RS23345 | 91811..92143 | - | 333 | WP_224205061.1 | phage antirepressor KilAC domain-containing protein | - |
| LPH31_RS23350 | 92264..92389 | - | 126 | Protein_91 | phage antirepressor Ant | - |
| LPH31_RS23360 (VEGS20_45410) | 93192..93371 | - | 180 | WP_038997082.1 | hypothetical protein | - |
| LPH31_RS23365 (VEGS20_45420) | 93376..93756 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| LPH31_RS23370 (VEGS20_45430) | 93756..93977 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LPH31_RS23375 (VEGS20_45440) | 94160..95716 | + | 1557 | WP_038997084.1 | type I restriction-modification system subunit M | - |
| LPH31_RS23380 (VEGS20_45450) | 95713..96978 | + | 1266 | WP_106693635.1 | restriction endonuclease subunit S | - |
| LPH31_RS23385 (VEGS20_45460) | 97100..100216 | + | 3117 | WP_072663770.1 | HsdR family type I site-specific deoxyribonuclease | - |
| LPH31_RS23390 (VEGS20_45470) | 100483..100989 | - | 507 | WP_050010491.1 | 3'-phosphatase | - |
| LPH31_RS23395 (VEGS20_45480) | 101062..102324 | - | 1263 | WP_229430278.1 | hypothetical protein | - |
| LPH31_RS23400 (VEGS20_45500) | 102859..103556 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| LPH31_RS23405 (VEGS20_45510) | 103491..103763 | - | 273 | WP_050489281.1 | PerC family transcriptional regulator | - |
| LPH31_RS23410 (VEGS20_45520) | 103853..104587 | + | 735 | WP_000578338.1 | helix-turn-helix domain-containing protein | - |
| LPH31_RS23415 (VEGS20_45530) | 104742..104936 | - | 195 | Protein_104 | iron-containing alcohol dehydrogenase | - |
| LPH31_RS23420 | 104979..105281 | + | 303 | Protein_105 | IS3 family transposase ISEc31 | Transposase |
| LPH31_RS23425 | 105345..105979 | + | 635 | Protein_106 | IS30 family transposase IS30D | Transposase |
| LPH31_RS23430 (VEGS20_45560) | 106129..107109 | - | 981 | WP_229430279.1 | IS5 family transposase ISKpn26 | Transposase |
| LPH31_RS23435 (VEGS20_45570) | 107414..108277 | - | 864 | WP_229430280.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LPH31_RS23440 | 108902..108903 | - | 2 | WP_001390281.1 | IS1-like element IS1B family transposase | - |
| LPH31_RS23445 | 109313..112784 | - | 3472 | Protein_110 | cellulose synthase complex outer membrane protein BcsC | - |
| LPH31_RS23450 | 112766..112918 | - | 153 | Protein_111 | endo-1,4-D-glucanase | - |
| LPH31_RS23455 | 113251..113388 | - | 138 | Protein_112 | IS3 family transposase IS2 | Transposase |
| LPH31_RS23460 | 113386..113920 | - | 535 | Protein_113 | IS3 family transposase IS2 | Transposase |
| LPH31_RS23465 (VEGS20_45680) | 114222..116372 | - | 2151 | WP_001351999.1 | cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB | - |
| LPH31_RS23470 (VEGS20_45690) | 116436..118541 | - | 2106 | WP_229430281.1 | UDP-forming cellulose synthase catalytic subunit | - |
| LPH31_RS23475 (VEGS20_45710) | 118622..119319 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| LPH31_RS23480 (VEGS20_45720) | 119366..120712 | - | 1347 | WP_229430282.1 | GGDEF domain-containing protein | - |
| LPH31_RS23485 (VEGS20_45730) | 120702..123035 | - | 2334 | WP_229430283.1 | putative cyclic di-GMP phosphodiesterase PdeI | VF |
| LPH31_RS23490 | 123545..123917 | + | 373 | Protein_119 | IS1 family transposase IS1N | Transposase |
| LPH31_RS23495 | 123931..124527 | + | 597 | Protein_120 | IS21 family transposase IS100kyp | Transposase |
| LPH31_RS23500 (VEGS20_45770) | 124524..125305 | + | 782 | Protein_121 | IS21 family transposase IS100kyp | Transposase |
| LPH31_RS23505 | 125397..125519 | - | 123 | Protein_122 | IS66 family insertion sequence element accessory protein TnpB | - |
| LPH31_RS23510 (VEGS20_45780) | 125583..126287 | + | 705 | WP_032236663.1 | IS6 family transposase IS15DI | Transposase |
| LPH31_RS23515 (VEGS20_45790) | 126630..128375 | - | 1746 | WP_229430284.1 | Ig-like domain-containing protein | - |
| LPH31_RS23520 (VEGS20_45800) | 128290..129015 | - | 726 | WP_229430285.1 | DUF4165 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|