MGE detailed information
MGE type: Conjugative plasmid MGE length: 89026 bp
Accession: NZ_AP025182 Location: 1..89026 Organism: Escherichia coli strain JP538 Replicon: plasmid p538_L
Accession: NZ_AP025182 Location: 1..89026 Organism: Escherichia coli strain JP538 Replicon: plasmid p538_L
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS25195 (665) | 665..1261 | + | 597 | WP_151308981.1 | hypothetical protein | - |
| R5G_RS25200 (1724) | 1724..2224 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| R5G_RS25205 (2953) | 2953..3387 | + | 435 | WP_151308980.1 | post-segregation killing protein PndC | - |
| R5G_RS25210 (3480) | 3480..3746 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| R5G_RS25215 (3811) | 3811..4752 | + | 942 | WP_063102608.1 | Recombination-promoting nuclease RpnA | VF |
| R5G_RS25220 (4814) | 4814..5008 | + | 195 | WP_001577563.1 | hypothetical protein | VF |
| R5G_RS25225 (5039) | 5039..5290 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| R5G_RS25230 (5872) | 5872..6720 | + | 849 | WP_240993123.1 | DUF4942 domain-containing protein | - |
| R5G_RS25235 (6805) | 6805..7140 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| R5G_RS25240 (7374) | 7374..7706 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| R5G_RS25245 (7717) | 7717..10416 | + | 2700 | WP_240993124.1 | Protein TraI | Relaxase |
| R5G_RS25250 (10453) | 10453..12744 | - | 2292 | WP_001289269.1 | F-type conjugative transfer protein TrbC | - |
| R5G_RS25255 (12737) | 12737..13807 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| R5G_RS25260 (13826) | 13826..15034 | - | 1209 | WP_000121263.1 | hypothetical protein | VF |
| R5G_RS25265 (15341) | 15341..16120 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (16635) | 16635..16695 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (16635) | 16635..16695 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (16635) | 16635..16695 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (16635) | 16635..16695 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| R5G_RS25270 (16747) | 16747..16899 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| R5G_RS25275 (16971) | 16971..17222 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| R5G_RS25870 (17965) | 17965..18060 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| R5G_RS25280 (18125) | 18125..18367 | - | 243 | WP_000504400.1 | hypothetical protein | - |
| R5G_RS25285 (18486) | 18486..18695 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| R5G_RS25290 (18793) | 18793..19455 | - | 663 | WP_124983586.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| R5G_RS25295 (19526) | 19526..21694 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| R5G_RS25300 (21791) | 21791..22375 | - | 585 | WP_060527640.1 | IncI1-type conjugal transfer protein TraX | - |
| R5G_RS25305 (22404) | 22404..23606 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| R5G_RS25310 (23573) | 23573..24187 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| R5G_RS25315 (24187) | 24187..27231 | - | 3045 | WP_001024776.1 | IncI1-type conjugal transfer protein TraU | - |
| R5G_RS25320 (27321) | 27321..28121 | - | 801 | WP_060527642.1 | IncI1-type conjugal transfer protein TraT | - |
| R5G_RS25325 (28105) | 28105..28293 | - | 189 | WP_124983585.1 | putative conjugal transfer protein TraS | - |
| R5G_RS25330 (28357) | 28357..28761 | - | 405 | WP_063119512.1 | IncI1-type conjugal transfer protein TraR | - |
| R5G_RS25335 (28812) | 28812..29339 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| R5G_RS25340 (29339) | 29339..30043 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| R5G_RS25345 (30043) | 30043..31332 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| R5G_RS25350 (31335) | 31335..32318 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| R5G_RS25355 (32329) | 32329..33021 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| R5G_RS25360 (33018) | 33018..33365 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| R5G_RS25365 (33383) | 33383..37150 | - | 3768 | WP_094320533.1 | DUF5710 domain-containing protein | - |
| R5G_RS25370 (37239) | 37239..37790 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| R5G_RS25375 (37805) | 37805..38095 | - | 291 | WP_072107178.1 | conjugal transfer protein | - |
| R5G_RS25380 (38092) | 38092..39240 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| R5G_RS25385 (39237) | 39237..40055 | - | 819 | WP_000866663.1 | hypothetical protein | VF |
| R5G_RS25390 (40052) | 40052..40510 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| R5G_RS25395 (40905) | 40905..41489 | - | 585 | WP_000977523.1 | histidine phosphatase family protein | - |
| R5G_RS25400 (41549) | 41549..42751 | - | 1203 | WP_063102748.1 | conjugal transfer protein TraF | - |
| R5G_RS25405 (42836) | 42836..43660 | - | 825 | WP_063119509.1 | conjugal transfer protein TraE | - |
| R5G_RS25410 (43811) | 43811..44965 | - | 1155 | WP_001139957.1 | site-specific integrase | - |
| R5G_RS25415 (44964) | 44964..45248 | + | 285 | WP_236266610.1 | pilus assembly protein PilV | - |
| R5G_RS25420 (46066) | 46066..47490 | - | 1425 | WP_205940896.1 | hypothetical protein | VF |
| R5G_RS25425 (47490) | 47490..48146 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| R5G_RS25430 (48131) | 48131..48691 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| R5G_RS25435 (48701) | 48701..49315 | - | 615 | WP_063102676.1 | hypothetical protein | VF |
| R5G_RS25440 (49333) | 49333..50430 | - | 1098 | WP_001492931.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| R5G_RS25445 (50443) | 50443..51996 | - | 1554 | WP_063102675.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| R5G_RS25450 (52007) | 52007..52459 | - | 453 | WP_001247870.1 | hypothetical protein | VF |
| R5G_RS25455 (52446) | 52446..53741 | - | 1296 | WP_063102674.1 | type 4b pilus protein PilO2 | - |
| R5G_RS25460 (53734) | 53734..55416 | - | 1683 | WP_063119479.1 | Outer membrane lipoprotein BfpB | VF |
| R5G_RS25465 (55430) | 55430..55867 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| R5G_RS25470 (55867) | 55867..56934 | - | 1068 | WP_063102629.1 | hypothetical protein | VF |
| R5G_RS25475 (57608) | 57608..58060 | - | 453 | WP_063102630.1 | hypothetical protein | - |
| R5G_RS25480 (58103) | 58103..58357 | - | 255 | WP_053921312.1 | PilI type IV pilus biogenesis protein | - |
| R5G_RS25485 (58520) | 58520..59071 | - | 552 | WP_063102631.1 | hypothetical protein | - |
| R5G_RS25490 (59231) | 59231..59914 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| R5G_RS25495 (60168) | 60168..60701 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| R5G_RS25500 (61143) | 61143..61430 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| R5G_RS25505 (61468) | 61468..61626 | - | 159 | Protein_64 | ash family protein | - |
| R5G_RS25510 (62583) | 62583..63614 | + | 1032 | WP_000907868.1 | plasmid replication initiator RepA | - |
| R5G_RS25515 (64309) | 64309..64524 | + | 216 | WP_024169051.1 | hypothetical protein | - |
| R5G_RS25520 (64822) | 64822..66021 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| R5G_RS25525 (66031) | 66031..66219 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| R5G_RS25530 (66339) | 66339..66617 | + | 279 | Protein_69 | mercury resistance co-regulator MerD | - |
| R5G_RS25535 (66614) | 66614..66850 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| R5G_RS25540 (66886) | 66886..67554 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| R5G_RS25545 (67629) | 67629..68879 | + | 1251 | Protein_72 | transposase | - |
| R5G_RS25550 (68944) | 68944..69648 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| R5G_RS25555 (69896) | 69896..70759 | + | 864 | WP_000612791.1 | SDR family oxidoreductase | - |
| R5G_RS25560 (70797) | 70797..71042 | + | 246 | WP_001354008.1 | GrpB family protein | - |
| R5G_RS25565 (71511) | 71511..72302 | + | 792 | WP_000034420.1 | Dihydropteroate synthase | ARG |
| R5G_RS25570 (72305) | 72305..72580 | - | 276 | WP_109023896.1 | hypothetical protein | - |
| R5G_RS25575 (72603) | 72603..73235 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| R5G_RS25580 (73482) | 73482..73814 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| R5G_RS25585 (73937) | 73937..74775 | - | 839 | Protein_80 | Streptomycin 3''-adenylyltransferase | ARG |
| R5G_RS25590 (74868) | 74868..76127 | - | 1260 | WP_000095725.1 | Bicyclomycin resistance protein | ARG |
| R5G_RS25595 (76342) | 76342..77180 | - | 839 | Protein_82 | Streptomycin 3''-adenylyltransferase | ARG |
| R5G_RS25600 (77186) | 77186..77476 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| R5G_RS25605 (77588) | 77588..78085 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| R5G_RS25610 (78230) | 78230..79243 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| R5G_RS25615 (79549) | 79549..80106 | + | 558 | WP_001162012.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| R5G_RS25620 (80109) | 80109..83081 | + | 2973 | WP_001138073.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| R5G_RS25625 (83112) | 83112..83624 | + | 513 | Protein_88 | IS91 family transposase ISSod25 | Transposase |
| R5G_RS25630 (83805) | 83805..84449 | + | 645 | WP_001144036.1 | ParA family protein | - |
| R5G_RS25635 (84536) | 84536..84844 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| R5G_RS25640 (85258) | 85258..86238 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| R5G_RS25645 (86231) | 86231..86647 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| R5G_RS25650 (86649) | 86649..87923 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| R5G_RS25655 (87923) | 87923..88360 | - | 438 | WP_240993121.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| R5G_RS25660 (88357) | 88357..88605 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|