MGE detailed information
MGE type: Prophage MGE length: 85097 bp
Accession: NZ_AP025180 Location: 690287..775383 Organism: Escherichia coli strain JP538 Replicon: chromosome
Accession: NZ_AP025180 Location: 690287..775383 Organism: Escherichia coli strain JP538 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R5G_RS03550 () | 686143..686943 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| R5G_RS03555 () | 686956..687807 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| R5G_RS03560 () | 687862..688320 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| R5G_RS03565 () | 688749..689315 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| R5G_RS03570 () | 689312..690121 | - | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| R5G_RS03575 () | 690287..690496 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| R5G_RS03580 () | 690509..690652 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| R5G_RS03585 () | 691322..691609 | - | 288 | WP_001006866.1 | YebO family protein | - |
| R5G_RS03590 () | 691684..691827 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| R5G_RS03595 () | 691986..692225 | + | 240 | WP_001211011.1 | YobH family protein | - |
| R5G_RS03600 () | 692369..693160 | - | 792 | WP_001262203.1 | DNA-binding transcriptional regulator KdgR | - |
| R5G_RS03605 () | 693337..694710 | + | 1374 | WP_096215767.1 | MFS transporter | - |
| R5G_RS03610 () | 694756..695637 | - | 882 | WP_000984520.1 | protease HtpX | - |
| R5G_RS03615 () | 695829..697877 | - | 2049 | WP_001055791.1 | carboxy terminal-processing peptidase | - |
| R5G_RS03620 () | 697897..698595 | - | 699 | WP_000431381.1 | RNA chaperone ProQ | - |
| R5G_RS03625 () | 698692..699189 | - | 498 | WP_001043877.1 | L-methionine (R)-S-oxide reductase | - |
| R5G_RS03630 () | 699319..700602 | + | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| R5G_RS03635 () | 700571..703204 | + | 2634 | WP_001326728.1 | hypothetical protein | VF |
| R5G_RS03640 () | 703284..704723 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| R5G_RS03645 () | 704841..705077 | + | 237 | WP_001295499.1 | YebV family protein | - |
| R5G_RS03650 () | 705182..705373 | + | 192 | WP_000457842.1 | YebW family protein | - |
| R5G_RS03655 () | 705374..706030 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 706127..706398 | + | 272 | - | - | Antitoxin Detail |
| - | 706165..706268 | - | 104 | - | - | Toxin Detail |
| R5G_RS03660 () | 706426..706767 | - | 342 | WP_000976476.1 | YebY family protein | - |
| R5G_RS03665 () | 706780..707652 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| R5G_RS03670 () | 707656..708030 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| R5G_RS03675 () | 708169..708399 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| R5G_RS03680 () | 708501..709157 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| R5G_RS03685 () | 709181..709843 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| R5G_RS03690 () | 709840..711900 | - | 2061 | WP_000936927.1 | oligopeptidase B | - |
| R5G_RS03695 () | 712109..712768 | - | 660 | WP_000024757.1 | tellurite resistance TerB family protein | - |
| R5G_RS03700 () | 713095..713451 | - | 357 | WP_001295500.1 | protein YebF | - |
| R5G_RS03705 () | 713518..713808 | - | 291 | WP_096302096.1 | DNA damage-inducible protein YebG | - |
| R5G_RS03710 () | 713942..715120 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| R5G_RS03715 () | 715176..715817 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| R5G_RS03720 () | 715854..717665 | - | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| R5G_RS03725 () | 717900..719375 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| R5G_RS03730 () | 719713..720582 | + | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| R5G_RS03735 () | 720710..722152 | + | 1443 | WP_240993079.1 | pyruvate kinase | - |
| R5G_RS03740 () | 722283..723254 | - | 972 | WP_000448381.1 | hypothetical protein | VF |
| R5G_RS03745 () | 723374..724696 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| R5G_RS03750 () | 724712..725644 | - | 933 | WP_001300644.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| R5G_RS03755 () | 725723..726478 | + | 756 | WP_000202996.1 | hypothetical protein | VF |
| R5G_RS03760 () | 726475..727260 | + | 786 | WP_000571480.1 | hypothetical protein | VF |
| R5G_RS03765 () | 727407..728417 | - | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| R5G_RS03770 () | 728426..729037 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| R5G_RS03775 () | 729176..729241 | - | 66 | WP_010723105.1 | stress response small protein YobI | - |
| R5G_RS03780 () | 729312..729914 | + | 603 | WP_001024932.1 | YebB family permuted papain-like enzyme | - |
| R5G_RS03785 () | 729916..730437 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| R5G_RS03790 () | 730472..731212 | - | 741 | WP_240993080.1 | hypothetical protein | VF |
| R5G_RS03795 () | 731241..731693 | - | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| R5G_RS03800 () | 731811..733583 | - | 1773 | WP_001258678.1 | aspartate--tRNA ligase | - |
| R5G_RS03805 () | 733893..734459 | + | 567 | WP_000891621.1 | hydrolase | - |
| R5G_RS03810 () | 734456..734551 | + | 96 | Protein_761 | hypothetical protein | - |
| R5G_RS03815 () | 734814..735062 | + | 249 | WP_001217539.1 | DinI-like family protein | - |
| R5G_RS03820 () | 735178..735762 | - | 585 | WP_230905591.1 | tail fiber assembly protein | - |
| R5G_RS03825 () | 735762..739172 | - | 3411 | WP_240993081.1 | prophage tail fiber N-terminal domain-containing protein | - |
| R5G_RS03830 () | 739237..739836 | - | 600 | WP_240993082.1 | hypothetical protein | VF |
| R5G_RS03835 () | 739906..743319 | - | 3414 | WP_240993083.1 | host specificity protein J | - |
| R5G_RS03840 () | 743380..744027 | - | 648 | WP_077630658.1 | tail assembly protein | - |
| R5G_RS03845 () | 743925..744668 | - | 744 | WP_240993084.1 | C40 family peptidase | - |
| R5G_RS03850 () | 744674..745372 | - | 699 | WP_096264048.1 | phage minor tail protein L | - |
| R5G_RS03855 () | 745372..745728 | - | 357 | WP_001330090.1 | phage tail protein | - |
| R5G_RS03860 () | 745706..748945 | - | 3240 | WP_240993050.1 | phage tail tape measure protein | - |
| R5G_RS03865 () | 748991..749281 | - | 291 | WP_001211641.1 | DUF4035 domain-containing protein | - |
| R5G_RS03870 () | 749293..749664 | - | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| R5G_RS03875 () | 749679..750383 | - | 705 | WP_000097533.1 | hypothetical protein | - |
| R5G_RS03880 () | 750443..750787 | - | 345 | WP_240993056.1 | DUF3168 domain-containing protein | - |
| R5G_RS03885 () | 750784..751230 | - | 447 | WP_000347790.1 | HK97 gp10 family phage protein | - |
| R5G_RS03890 () | 751230..751568 | - | 339 | WP_001147820.1 | phage head closure protein | - |
| R5G_RS03895 () | 751577..751882 | - | 306 | WP_050939781.1 | head-tail connector protein | - |
| R5G_RS03900 () | 751894..752082 | - | 189 | WP_000601355.1 | hypothetical protein | - |
| R5G_RS03905 () | 752133..753338 | - | 1206 | WP_106494050.1 | phage major capsid protein | - |
| R5G_RS03910 () | 753353..754003 | - | 651 | WP_215278209.1 | HK97 family phage prohead protease | - |
| R5G_RS03915 () | 753981..755222 | - | 1242 | WP_000466247.1 | phage portal protein | - |
| R5G_RS03920 () | 755222..755404 | - | 183 | WP_000478567.1 | hypothetical protein | - |
| R5G_RS03925 () | 755416..757173 | - | 1758 | WP_001140902.1 | terminase large subunit | - |
| R5G_RS03930 () | 757173..757655 | - | 483 | WP_097292784.1 | phage terminase small subunit P27 family | - |
| R5G_RS03935 () | 757803..758153 | - | 351 | WP_001140099.1 | HNH endonuclease signature motif containing protein | - |
| R5G_RS03940 () | 758258..758443 | - | 186 | WP_001228684.1 | Rz1 family lipoprotein | - |
| R5G_RS03945 () | 758660..759193 | - | 534 | WP_016231763.1 | lysozyme | - |
| R5G_RS03950 () | 759330..759611 | + | 282 | WP_059332741.1 | hypothetical protein | - |
| R5G_RS03955 () | 759781..760077 | - | 297 | Protein_790 | DUF1327 domain-containing protein | - |
| R5G_RS03960 () | 760082..760297 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| R5G_RS03985 () | 761347..762099 | - | 753 | WP_062859935.1 | antitermination protein | - |
| R5G_RS03990 () | 762113..763102 | - | 990 | WP_096002668.1 | DUF968 domain-containing protein | - |
| R5G_RS03995 () | 763155..763412 | - | 258 | WP_001065352.1 | hypothetical protein | - |
| R5G_RS04000 () | 763409..764800 | - | 1392 | WP_219351159.1 | replicative DNA helicase | - |
| R5G_RS04005 () | 764797..765675 | - | 879 | WP_219351160.1 | ATP-binding protein | - |
| R5G_RS04010 () | 765686..766510 | - | 825 | WP_219351161.1 | helix-turn-helix domain-containing protein | - |
| R5G_RS04015 () | 766507..766731 | - | 225 | WP_000620696.1 | hypothetical protein | - |
| R5G_RS04020 () | 766728..767582 | - | 855 | WP_230905538.1 | Rha family phage regulatory protein | - |
| R5G_RS04025 () | 767579..768241 | - | 663 | WP_219351163.1 | ash family protein | - |
| R5G_RS04030 () | 768351..769058 | - | 708 | WP_169000976.1 | Rha family transcriptional regulator | - |
| R5G_RS04035 () | 769055..769345 | - | 291 | WP_169000975.1 | YdaS family helix-turn-helix protein | - |
| R5G_RS04040 () | 769479..770168 | + | 690 | WP_000800136.1 | LexA family transcriptional regulator | - |
| R5G_RS04045 () | 770315..770776 | + | 462 | WP_169000948.1 | helix-turn-helix transcriptional regulator | - |
| R5G_RS04050 () | 770945..771172 | - | 228 | WP_000606214.1 | hypothetical protein | - |
| R5G_RS04055 () | 771511..771717 | + | 207 | WP_169000950.1 | hypothetical protein | - |
| R5G_RS04060 () | 771914..772102 | + | 189 | WP_000391589.1 | hypothetical protein | - |
| R5G_RS04065 () | 772099..772680 | + | 582 | WP_024245795.1 | hypothetical protein | - |
| R5G_RS04070 () | 772688..772960 | + | 273 | WP_024245796.1 | hypothetical protein | - |
| R5G_RS04075 () | 772965..773345 | + | 381 | WP_024245797.1 | DUF5406 family protein | - |
| R5G_RS04080 () | 773377..773619 | + | 243 | WP_024235208.1 | DUF4222 domain-containing protein | - |
| R5G_RS04085 () | 773623..773769 | + | 147 | WP_169000963.1 | hypothetical protein | - |
| R5G_RS04090 () | 773778..774014 | + | 237 | WP_000528717.1 | excisionase family protein | - |
| R5G_RS04095 () | 774070..775383 | + | 1314 | WP_219351165.1 | hypothetical protein ; Integrase | Integrase |
| R5G_RS04100 () | 775365..776135 | + | 771 | WP_049768377.1 | DUF72 domain-containing protein | - |
| R5G_RS04105 () | 776188..776583 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| R5G_RS04110 () | 776624..777367 | + | 744 | WP_000019590.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| R5G_RS04115 () | 777364..778335 | + | 972 | WP_000564725.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|